Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes
暂无分享,去创建一个
V. Franke | F. Aoki | R. Malik | Maja Kuzman | Sravya Ganesh | Filip Horvat | R. Karlić | Josef Pasulka | K. Vlahoviček | Petr Svoboda | Richard M. Schultz | Helena Fulka | Marketa Cernohorska | Jana Urbanova | Eliska Svobodova | Jun Ma | Yutaka Suzuki | P. Svoboda
[1] Yutaka Suzuki,et al. Long non-coding RNA exchange during the oocyte-to-embryo transition in mice , 2017, DNA research : an international journal for rapid publication of reports on genes and genomes.
[2] Yutaka Suzuki,et al. Long non-coding RNA exchange during the oocyte-to-embryo transition in mice , 2017, DNA research : an international journal for rapid publication of reports on genes and genomes.
[3] V. Tarabykin,et al. Coordinately Co-opted Multiple Transposable Elements Constitute an Enhancer for wnt5a Expression in the Mammalian Secondary Palate , 2016, PLoS genetics.
[4] Jonathan Göke,et al. CTRL+INSERT: retrotransposons and their contribution to regulation and innovation of the transcriptome , 2016, EMBO reports.
[5] L. Hurst,et al. Open questions in the study of de novo genes: what, how and why , 2016, Nature Reviews Genetics.
[6] G. Fuellen,et al. Proteomic Analysis of Mouse Oocytes Identifies PRMT7 as a Reprogramming Factor that Replaces SOX2 in the Induction of Pluripotent Stem Cells. , 2016, Journal of proteome research.
[7] M. Lorincz,et al. Long Terminal Repeats: From Parasitic Elements to Building Blocks of the Transcriptional Regulatory Repertoire. , 2016, Molecular cell.
[8] G. Faulkner,et al. Transposable elements in the mammalian embryo: pioneers surviving through stealth and service , 2016, Genome Biology.
[9] Helen M. Rowe,et al. Transposable Elements and Their KRAB-ZFP Controllers Regulate Gene Expression in Adult Tissues. , 2016, Developmental cell.
[10] C. Feschotte,et al. Regulatory evolution of innate immunity through co-option of endogenous retroviruses , 2016, Science.
[11] Robert D. Finn,et al. The Dfam database of repetitive DNA families , 2015, Nucleic Acids Res..
[12] D. Trono,et al. The developmental control of transposable elements and the evolution of higher species. , 2015, Annual review of cell and developmental biology.
[13] D. Greenberg,et al. Spotting the enemy within: Targeted silencing of foreign DNA in mammalian genomes by the Krüppel-associated box zinc finger protein family , 2015, Mobile DNA.
[14] S. Andrews,et al. Deep sequencing and de novo assembly of the mouse oocyte transcriptome define the contribution of transcription to the DNA methylation landscape , 2015, Genome Biology.
[15] Yutaka Suzuki,et al. The first murine zygotic transcription is promiscuous and uncoupled from splicing and 3′ processing , 2015, The EMBO journal.
[16] D. Mager,et al. Mammalian Endogenous Retroviruses , 2015, Microbiology spectrum.
[17] Cédric Feschotte,et al. Ancient Transposable Elements Transformed the Uterine Regulatory Landscape and Transcriptome during the Evolution of Mammalian Pregnancy , 2015, Cell reports.
[18] Zhihai Ma,et al. Widespread contribution of transposable elements to the innovation of gene regulatory networks , 2014, Genome research.
[19] D. Guallar,et al. Regulation of Mouse Retroelement MuERV-L/MERVL Expression by REX1 and Epigenetic Control of Stem Cell Potency , 2014, Front. Oncol..
[20] K. Nakai,et al. Inferring the choreography of parental genomes during fertilization from ultralarge-scale whole-transcriptome analysis , 2013, Genes & development.
[21] K. Vlahovicek,et al. A Retrotransposon-Driven Dicer Isoform Directs Endogenous Small Interfering RNA Production in Mouse Oocytes , 2013, Cell.
[22] James H. Crichton,et al. Defending the genome from the enemy within: mechanisms of retrotransposon suppression in the mouse germline , 2013, Cellular and Molecular Life Sciences.
[23] Chin Wee Tan,et al. The nuage mediates retrotransposon silencing in mouse primordial ovarian follicles , 2013, Development.
[24] D. Solter,et al. A Tudor Domain Protein SPINDLIN1 Interacts with the mRNA-Binding Protein SERBP1 and Is Involved in Mouse Oocyte Meiotic Resumption , 2013, PloS one.
[25] Steven J. M. Jones,et al. Distinct roles of KAP1, HP1 and G9a/GLP in silencing of the two-cell-specific retrotransposon MERVL in mouse ES cells , 2013, Epigenetics & Chromatin.
[26] S. Shaham,et al. PolyQ disease: misfiring of a developmental cell death program? , 2013, Trends in cell biology.
[27] M. Rubinstein,et al. Exaptation of Transposable Elements into Novel Cis-Regulatory Elements: Is the Evidence Always Strong? , 2013, Molecular biology and evolution.
[28] Helen M. Rowe,et al. TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells , 2013, Genome research.
[29] J. Baker,et al. Endogenous retroviruses function as species-specific enhancer elements in the placenta , 2013, Nature Genetics.
[30] Crystal M. Hepp,et al. Revisiting the evolution of mouse LINE-1 in the genomic era , 2013, Mobile DNA.
[31] Thomas M. Keane,et al. The genomic landscape shaped by selection on transposable elements across 18 mouse strains , 2012, Genome Biology.
[32] D. C. Hancks,et al. Active human retrotransposons: variation and disease. , 2012, Current opinion in genetics & development.
[33] D. Higgins,et al. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega , 2011, Molecular systems biology.
[34] S. Andrews,et al. Dynamic CpG island methylation landscape in oocytes and preimplantation embryos , 2011, Nature Genetics.
[35] G. Fuellen,et al. Proteomic analysis of mouse oocytes reveals 28 candidate factors of the "reprogrammome". , 2011, Journal of proteome research.
[36] Bing Ren,et al. Endogenous retroviruses and neighboring genes are coordinately repressed by LSD1/KDM1A. , 2011, Genes & development.
[37] G. Mizuguchi,et al. Stepwise Histone Replacement by SWR1 Requires Dual Activation with Histone H2A.Z and Canonical Nucleosome , 2010, Cell.
[38] I. Wilmut,et al. Proteome of mouse oocytes at different developmental stages , 2010, Proceedings of the National Academy of Sciences.
[39] Chad A. Cowan,et al. Rewirable gene regulatory networks in the preimplantation embryonic development of three mammalian species. , 2010, Genome research.
[40] Helen M. Rowe,et al. KAP1 controls endogenous retroviruses in embryonic stem cells , 2010, Nature.
[41] Oliver H. Tam,et al. Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes , 2008, Nature.
[42] Y. Sakaki,et al. Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes , 2008, Nature.
[43] T. Heidmann,et al. Murine Endogenous Retrovirus MuERV-L Is the Progenitor of the “Orphan” Epsilon Viruslike Particles of the Early Mouse Embryo , 2007, Journal of Virology.
[44] Michael B. Stadler,et al. Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome , 2007, Nature Genetics.
[45] L. N. van de Lagemaat,et al. Multiple effects govern endogenous retrovirus survival patterns in human gene introns , 2006, Genome Biology.
[46] Liane Gagnier,et al. Retroviral Elements and Their Hosts: Insertional Mutagenesis in the Mouse Germ Line , 2006, PLoS genetics.
[47] T. J. Robinson,et al. Molecular phylogeny of the African pygmy mice, subgenus Nannomys (Rodentia, Murinae, Mus): implications for chromosomal evolution. , 2005, Molecular phylogenetics and evolution.
[48] A. Evsikov,et al. Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos. , 2004, Developmental cell.
[49] G. Hannon,et al. RNAi and expression of retrotransposons MuERV-L and IAP in preimplantation mouse embryos. , 2004, Developmental biology.
[50] J. McDonald,et al. Long terminal repeat retrotransposons of Mus musculus , 2004, Genome Biology.
[51] Kevin R. Thornton,et al. The origin of new genes: glimpses from the young and old , 2003, Nature Reviews Genetics.
[52] J. Costas. Molecular Characterization of the Recent Intragenomic Spread of the Murine Endogenous Retrovirus MuERV-L , 2003, Journal of Molecular Evolution.
[53] N. Minami,et al. MuERV-L Is One of the Earliest Transcribed Genes in Mouse One-Cell Embryos1 , 2003, Biology of reproduction.
[54] R. Behringer,et al. Manipulating the Mouse Embryo: A Laboratory Manual , 2002 .
[55] Tom H. Pringle,et al. The human genome browser at UCSC. , 2002, Genome research.
[56] M. Ko,et al. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. , 2001, Genome research.
[57] J. Ortonne,et al. Transposable B2 SINE elements can provide mobile RNA polymerase II promoters , 2001, Nature Genetics.
[58] T. Heidmann,et al. Cloning of a new murine endogenous retrovirus, MuERV-L, with strong similarity to the human HERV-L element and with a gag coding sequence closely related to the Fv1 restriction gene , 1997, Journal of virology.
[59] A. Devries,et al. Convergent evolution of antifreeze glycoproteins in Antarctic notothenioid fish and Arctic cod. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[60] A. Devries,et al. Evolution of antifreeze glycoprotein gene from a trypsinogen gene in Antarctic notothenioid fish. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[61] A. Smit,et al. Identification of a new, abundant superfamily of mammalian LTR-transposons. , 1993, Nucleic acids research.
[62] A. Bird,et al. The expected equilibrium of the CpG dinucleotide in vertebrate genomes under a mutation model. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[63] Andreas Ritter,et al. Manipulating The Mouse Embryo A Laboratory Manual , 2016 .
[64] D. Solter,et al. Epigenetic Control of Early Mouse Development. , 2016, Current topics in developmental biology.
[65] V. Franke,et al. Sculpting the Transcriptome During the Oocyte-to-Embryo Transition in Mouse. , 2015, Current topics in developmental biology.
[66] Helen M. Rowe,et al. TRIM 28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells , 2013 .
[67] O. Pybus,et al. The evolutionary dynamics of endogenous retroviruses. , 2005, Trends in microbiology.
[68] J. Voncken. Transgene design. , 2003, Methods in molecular biology.
[69] Mouse Genome Sequencing Consortium. Initial sequencing and comparative analysis of the mouse genome , 2002, Nature.
[70] Alan M. Lambowitz,et al. Mobile DNA III , 2002 .