Complementary feature selection from alternative splicing events and gene expression for phenotype prediction
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Margaret L. Antonio | Paul E. Anderson | Robert C. Wilson | Paul E. Anderson | Patricia M. Watson | Dennis K. Watson | Charles J. Labuzzetta | Lauren A. Laboissonniere | Jeffrey M. Trimarchi | Baris Genc | P. Hande Ozdinler | J. Trimarchi | P. Ozdinler | P. Watson | D. Watson | R. Wilson | Robert C. Wilson | B. Genç
[1] M. Johnson,et al. Circulating microRNAs in Sera Correlate with Soluble Biomarkers of Immune Activation but Do Not Predict Mortality in ART Treated Individuals with HIV-1 Infection: A Case Control Study , 2015, PloS one.
[2] Ching-Wei Chang,et al. An Iterative Leave-One-Out Approach to Outlier Detection in RNA-Seq Data , 2015, PloS one.
[3] Björn Usadel,et al. Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..
[4] Cole Trapnell,et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. , 2010, Nature biotechnology.
[5] J. D. Macklis,et al. IGF-I specifically enhances axon outgrowth of corticospinal motor neurons , 2006, Nature Neuroscience.
[6] Ning Leng,et al. EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments , 2013, Bioinform..
[7] L. Levin,et al. Biodiversity on the Rocks: Macrofauna Inhabiting Authigenic Carbonate at Costa Rica Methane Seeps , 2015, PloS one.
[8] G. Shepherd,et al. eGFP Expression under UCHL1 Promoter Genetically Labels Corticospinal Motor Neurons and a Subpopulation of Degeneration-Resistant Spinal Motor Neurons in an ALS Mouse Model , 2013, The Journal of Neuroscience.
[9] Paul E. Anderson,et al. Predictive modeling of lung cancer recurrence using alternative splicing events versus differential expression data , 2014, 2014 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology.
[10] Andy Liaw,et al. Classification and Regression by randomForest , 2007 .
[11] Julie A. Dickerson,et al. Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems , 2014, BMC Bioinformatics.
[12] Xi Wang,et al. Gene set enrichment analysis of RNA-Seq data: integrating differential expression and splicing , 2013, BMC Bioinformatics.
[13] Mihaela Zavolan,et al. Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data , 2015, Genome Biology.
[14] Cole Trapnell,et al. Role of Rodent Secondary Motor Cortex in Value-based Action Selection Nih Public Access Author Manuscript , 2006 .
[15] Xavier Robin,et al. pROC: an open-source package for R and S+ to analyze and compare ROC curves , 2011, BMC Bioinformatics.
[16] Colin N. Dewey,et al. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome , 2011, BMC Bioinformatics.
[17] Trevor Hastie,et al. Regularization Paths for Generalized Linear Models via Coordinate Descent. , 2010, Journal of statistical software.
[18] Mukesh Jain,et al. NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data , 2012, PloS one.
[19] Jae Seung Lee,et al. Comprehensive Analysis of Transcriptome Sequencing Data in the Lung Tissues of COPD Subjects , 2015, International journal of genomics.
[20] H. Zou,et al. Regularization and variable selection via the elastic net , 2005 .
[21] S. Keleş,et al. Sparse partial least squares regression for simultaneous dimension reduction and variable selection , 2010, Journal of the Royal Statistical Society. Series B, Statistical methodology.
[22] Hideaki Sugawara,et al. The Sequence Read Archive , 2010, Nucleic Acids Res..
[23] Ning Leng,et al. EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments , 2013, Bioinform..
[24] Mijeong Kim,et al. Quantitative Shotgun Proteomics Analysis of Rice Anther Proteins after Exposure to High Temperature , 2015, International journal of genomics.