Cameroonian fruit bats harbor divergent viruses, including rotavirus H, bastroviruses, and picobirnaviruses using an alternative genetic code
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P. Maes | J. Matthijnssens | M. Van Ranst | S. Ghogomu | W. Deboutte | C. Yinda | N. Conceição-Neto | Leen Beller | E. Vanhulle
[1] David Wang,et al. Extensive conservation of prokaryotic ribosomal binding sites in known and novel picobirnaviruses. , 2018, Virology.
[2] W. Guan,et al. Viral metagenomics of six bat species in close contact with humans in southern China , 2017, Archives of Virology.
[3] X. Xia. DAMBE6: New Tools for Microbial Genomics, Phylogenetics, and Molecular Evolution , 2017, The Journal of heredity.
[4] A. Zohaib,et al. Molecular detection of viruses in Kenyan bats and discovery of novel astroviruses, caliciviruses and rotaviruses , 2017, Virologica Sinica.
[5] P. Maes,et al. Highly diverse population of Picornaviridae and other members of the Picornavirales, in Cameroonian fruit bats , 2017, BMC Genomics.
[6] M. Shi,et al. Surveillance of Bat Coronaviruses in Kenya Identifies Relatives of Human Coronaviruses NL63 and 229E and Their Recombination History , 2017, Journal of Virology.
[7] P. Maes,et al. Novel highly divergent sapoviruses detected by metagenomics analysis in straw-colored fruit bats in Cameroon , 2017, Emerging microbes & infections.
[8] Samson S. Y. Wong,et al. Identification and interspecies transmission of a novel bocaparvovirus among different bat species in China. , 2016, The Journal of general virology.
[9] Edward C. Holmes,et al. Redefining the invertebrate RNA virosphere , 2016, Nature.
[10] P. Maes,et al. Novel highly divergent reassortant bat rotaviruses in Cameroon, without evidence of zoonosis , 2016, Scientific Reports.
[11] P. Maes,et al. A single bat species in Cameroon harbors multiple highly divergent papillomaviruses in stool identified by metagenomics analysis , 2016, Virology Reports.
[12] Shixing Yang,et al. A novel rodent Chapparvovirus in feces of wild rats , 2016, Virology Journal.
[13] R. L. Harrison,et al. Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2016) , 2016, Archives of Virology.
[14] B. Koo,et al. Detection of Severe Acute Respiratory Syndrome‐Like, Middle East Respiratory Syndrome‐Like Bat Coronaviruses and Group H Rotavirus in Faeces of Korean Bats , 2016, Transboundary and emerging diseases.
[15] I. Monne,et al. The close genetic relationship of lineage D Betacoronavirus from Nigerian and Kenyan straw-colored fruit bats (Eidolon helvum) is consistent with the existence of a single epidemiological unit across sub-Saharan Africa , 2016, Virus Genes.
[16] Sudhir Kumar,et al. MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. , 2016, Molecular biology and evolution.
[17] P. Kellam,et al. A Novel Astrovirus-Like RNA Virus Detected in Human Stool , 2016, Virus evolution.
[18] David K. Smith,et al. Co-circulation of three camel coronavirus species and recombination of MERS-CoVs in Saudi Arabia , 2016, Science.
[19] T. Ng,et al. A diverse group of small circular ssDNA viral genomes in human and non-human primate stools , 2015, Virus evolution.
[20] Jelle Matthijnssens,et al. Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis , 2015, Scientific Reports.
[21] Heather J. Baldwin,et al. Evidence for an Ancestral Association of Human Coronavirus 229E with Bats , 2015, Journal of Virology.
[22] Shuyi Zhang,et al. Deciphering the bat virome catalog to better understand the ecological diversity of bat viruses and the bat origin of emerging infectious diseases , 2015, The ISME Journal.
[23] Matthew B. Sullivan,et al. VirSorter: mining viral signal from microbial genomic data , 2015, PeerJ.
[24] K. Bányai,et al. Genetic diversity and recombination within bufaviruses: Detection of a novel strain in Hungarian bats , 2015, Infection, Genetics and Evolution.
[25] K. Bányai,et al. Candidate New Rotavirus Species in Sheltered Dogs, Hungary , 2015, Emerging infectious diseases.
[26] Susanna K. P. Lau,et al. Middle East Respiratory Syndrome Coronavirus: Another Zoonotic Betacoronavirus Causing SARS-Like Disease , 2015, Clinical Microbiology Reviews.
[27] Julia P. G. Jones,et al. Detection of new genetic variants of Betacoronaviruses in Endemic Frugivorous Bats of Madagascar , 2015, Virology Journal.
[28] A. Alfieri,et al. Genetic variability of VP6, VP7, VP4, and NSP4 genes of porcine rotavirus group H detected in Brazil. , 2015, Virus research.
[29] E. Delwart,et al. Sesavirus: prototype of a new parvovirus genus in feces of a sea lion , 2014, Virus Genes.
[30] Michael Hackenberg,et al. DNA clustering and genome complexity , 2014, Comput. Biol. Chem..
[31] Narmada Thanki,et al. CDD: NCBI's conserved domain database , 2014, Nucleic Acids Res..
[32] Chao Xie,et al. Fast and sensitive protein alignment using DIAMOND , 2014, Nature Methods.
[33] Kimberly C. Brouwer,et al. Emerging and Reemerging Neglected Tropical Diseases: a Review of Key Characteristics, Risk Factors, and the Policy and Innovation Environment , 2014, Clinical Microbiology Reviews.
[34] N. Suzuki,et al. Taxonomic reorganization of family Partitiviridae and other recent progress in partitivirus research. , 2014, Virus research.
[35] P. Broady,et al. Diverse small circular single-stranded DNA viruses identified in a freshwater pond on the McMurdo Ice Shelf (Antarctica). , 2014, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
[36] K. Bányai,et al. Epidemiology, Phylogeny, and Evolution of Emerging Enteric Picobirnaviruses of Animal Origin and Their Relationship to Human Strains , 2014, BioMed research international.
[37] J. Matthijnssens,et al. Widespread Rotavirus H in Commercially Raised Pigs, United States , 2014, Emerging infectious diseases.
[38] Gerardo Chowell,et al. Rates of Influenza-like Illness and Winter School Breaks, Chile, 2004–2010 , 2014, Emerging infectious diseases.
[39] R. Plowright,et al. Bat Flight and Zoonotic Viruses , 2014, Emerging infectious diseases.
[40] J. Chiorini,et al. The family Parvoviridae , 2014, Archives of Virology.
[41] P. Brigidi,et al. The Three Genetics (Nuclear DNA, Mitochondrial DNA, and Gut Microbiome) of Longevity in Humans Considered as Metaorganisms , 2014, BioMed research international.
[42] Björn Usadel,et al. Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..
[43] S. Majee,et al. Novel bisegmented virus (picobirnavirus) of animals, birds and humans. , 2014 .
[44] Jian Yang,et al. DBatVir: the database of bat-associated viruses , 2014, Database J. Biol. Databases Curation.
[45] J. Harding,et al. Novel circular DNA viruses identified in Procordulia grayi and Xanthocnemis zealandica larvae using metagenomic approaches. , 2014, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
[46] Alexandros Stamatakis,et al. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies , 2014, Bioinform..
[47] M. Breitbart,et al. Distinct Lineage of Vesiculovirus from Big Brown Bats, United States , 2013, Emerging infectious diseases.
[48] E. Birney,et al. Pfam: the protein families database , 2013, Nucleic Acids Res..
[49] Amit Kapoor,et al. Middle East Respiratory Syndrome Coronavirus in Bats, Saudi Arabia , 2013, Emerging infectious diseases.
[50] Christian Drosten,et al. Ecology, evolution and classification of bat coronaviruses in the aftermath of SARS , 2013, Antiviral Research.
[51] C. Broder,et al. Continent-wide panmixia of an African fruit bat facilitates transmission of potentially zoonotic viruses , 2013, Nature Communications.
[52] M. Tschapka,et al. Bats carry pathogenic hepadnaviruses antigenically related to hepatitis B virus and capable of infecting human hepatocytes , 2013, Proceedings of the National Academy of Sciences.
[53] M. Breitbart,et al. Metagenomic identification of a nodavirus and a circular ssDNA virus in semi-purified viral nucleic acids from the hepatopancreas of healthy Farfantepenaeus duorarum shrimp. , 2013, Diseases of aquatic organisms.
[54] J. Epstein,et al. Bats are a major natural reservoir for hepaciviruses and pegiviruses , 2013, Proceedings of the National Academy of Sciences.
[55] Yingying Li,et al. Virome Profiling of Bats from Myanmar by Metagenomic Analysis of Tissue Samples Reveals More Novel Mammalian Viruses , 2013, PloS one.
[56] C. Webb,et al. A comparison of bats and rodents as reservoirs of zoonotic viruses: are bats special? , 2013, Proceedings of the Royal Society B: Biological Sciences.
[57] Chantal Reusken,et al. Human Betacoronavirus 2c EMC/2012–related Viruses in Bats, Ghana and Europe , 2013, Emerging infectious diseases.
[58] M. Breitbart,et al. Diverse circular ssDNA viruses discovered in dragonflies (Odonata: Epiprocta). , 2012, The Journal of general virology.
[59] J. Wood,et al. Novel, Potentially Zoonotic Paramyxoviruses from the African Straw-Colored Fruit Bat Eidolon helvum , 2012, Journal of Virology.
[60] G. Ossa,et al. The Movement Ecology of the Straw-Colored Fruit Bat, Eidolon helvum, in Sub-Saharan Africa Assessed by Stable Isotope Ratios , 2012, PloS one.
[61] B. S. Schneider,et al. Henipavirus-related Sequences in Fruit Bat Bushmeat, Republic of Congo , 2012, Emerging infectious diseases.
[62] Shuyi Zhang,et al. Virome Analysis for Identification of Novel Mammalian Viruses in Bat Species from Chinese Provinces , 2012, Journal of Virology.
[63] B. Haagmans,et al. Picobirnaviruses in the Human Respiratory Tract , 2012, Emerging infectious diseases.
[64] Sergey I. Nikolenko,et al. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing , 2012, J. Comput. Biol..
[65] M. Shi,et al. Genomic characterization of seven distinct bat coronaviruses in Kenya , 2012, Virus Research.
[66] M. J. Adams,et al. Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2012) , 2012, Archives of Virology.
[67] Steven L Salzberg,et al. Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.
[68] P. Zhou,et al. Metagenomic Analysis of Viruses from Bat Fecal Samples Reveals Many Novel Viruses in Insectivorous Bats in China , 2012, Journal of Virology.
[69] M. Knörnschild,et al. Bats host major mammalian paramyxoviruses , 2012, Nature Communications.
[70] Christian Drosten,et al. Two Novel Parvoviruses in Frugivorous New and Old World Bats , 2011, PloS one.
[71] J. Peiris,et al. Genogroup I and II Picobirnaviruses in Respiratory Tracts of Pigs , 2011, Emerging infectious diseases.
[72] Cheng Peng,et al. Genetic diversity of novel circular ssDNA viruses in bats in China. , 2011, The Journal of general virology.
[73] Sean R. Eddy,et al. Accelerated Profile HMM Searches , 2011, PLoS Comput. Biol..
[74] S. Ghabrial,et al. Widespread Endogenization of Densoviruses and Parvoviruses in Animal and Human Genomes , 2011, Journal of Virology.
[75] Robert D. Finn,et al. HMMER web server: interactive sequence similarity searching , 2011, Nucleic Acids Res..
[76] Martha R. J. Clokie,et al. Phages in nature , 2011, Bacteriophage.
[77] Eric Donaldson,et al. Metagenomic Analysis of the Viromes of Three North American Bat Species: Viral Diversity among Different Bat Species That Share a Common Habitat , 2010, Journal of Virology.
[78] T. Kunz,et al. Bat Guano Virome: Predominance of Dietary Viruses from Insects and Plants plus Novel Mammalian Viruses , 2010, Journal of Virology.
[79] S. Ghabrial,et al. A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus , 2010, Proceedings of the National Academy of Sciences.
[80] Zhènglì Shí,et al. Bat and virus , 2010, Protein & Cell.
[81] K. Medzihradszky,et al. The genome of Beet cryptic virus 1 shows high homology to certain cryptoviruses present in phylogenetically distant hosts , 2010, Virus Genes.
[82] Mila C Gonzalez,et al. Sustaining Global Surveillance and Response to Emerging Zoonotic Diseases , 2009 .
[83] N. J. Knowles,et al. Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2015) , 2009, Archives of Virology.
[84] Hadley Wickham,et al. ggplot2 - Elegant Graphics for Data Analysis (2nd Edition) , 2017 .
[85] Toni Gabaldón,et al. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses , 2009, Bioinform..
[86] D. Winstanley,et al. Densovirus induces winged morphs in asexual clones of the rosy apple aphid, Dysaphis plantaginea , 2009, Proceedings of the National Academy of Sciences.
[87] P. Racey,et al. Bats as bushmeat: a global review , 2009, Oryx.
[88] L. Anderson,et al. Detection of Novel SARS-like and Other Coronaviruses in Bats from Kenya , 2009, Emerging infectious diseases.
[89] P. Gibbs,et al. 25. A Parasite of Mitochondria? A Virus-like Agent in Neurogenic Tumors of a Tropical Marine Fish , 2009 .
[90] N. Kobayashi,et al. Whole genomic characterization of a human rotavirus strain B219 belonging to a novel group of the genus rotavirus , 2008, Journal of medical virology.
[91] B. Kan,et al. Molecular characterization of a novel adult diarrhoea rotavirus strain J19 isolated in China and its significance for the evolution and origin of group B rotaviruses. , 2008, The Journal of general virology.
[92] E. Holmes,et al. The role of alternative genetic codes in viral evolution and emergence. , 2008, Journal of theoretical biology.
[93] M. Müller,et al. Detection and Prevalence Patterns of Group I Coronaviruses in Bats, Northern Germany , 2008, Emerging infectious diseases.
[94] G. Grard,et al. Marburg Virus Infection Detected in a Common African Bat , 2007, PloS one.
[95] Ibtissem Grissa,et al. The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats , 2007, BMC Bioinformatics.
[96] H. Field,et al. Bats: Important Reservoir Hosts of Emerging Viruses , 2006, Clinical Microbiology Reviews.
[97] Thomas J Naughton,et al. Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified , 2006, BMC Evolutionary Biology.
[98] R. Glass,et al. Rotavirus and Severe Childhood Diarrhea , 2006, Emerging infectious diseases.
[99] J. Gonzalez,et al. Fruit bats as reservoirs of Ebola virus , 2005, Nature.
[100] Jonathan H. Epstein,et al. Bats Are Natural Reservoirs of SARS-Like Coronaviruses , 2005, Science.
[101] Kwok-Hung Chan,et al. Severe acute respiratory syndrome coronavirus-like virus in Chinese horseshoe bats. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[102] K. Katoh,et al. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. , 2002, Nucleic acids research.
[103] I. Zucker,et al. Periodic arousal from hibernation is necessary for initiation of immune responses in ground squirrels. , 2002, American journal of physiology. Regulatory, integrative and comparative physiology.
[104] C. Koh,et al. Isolation of Nipah virus from Malaysian Island flying-foxes. , 2002, Microbes and infection.
[105] L. H. Taylor,et al. Diseases of humans and their domestic mammals: pathogen characteristics, host range and the risk of emergence. , 2001, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[106] M E Woolhouse,et al. Risk factors for human disease emergence. , 2001, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[107] R. Glass,et al. Cloning of human picobirnavirus genomic segments and development of an RT-PCR detection assay. , 2000, Virology.
[108] P Stothard,et al. The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences. , 2000, BioTechniques.
[109] C. Brasier,et al. Multiple mitochondrial viruses in an isolate of the Dutch Elm disease fungus Ophiostoma novo-ulmi. , 1999, Virology.
[110] C. Howard,et al. Determinants of rotavirus host range restriction--a heterologous bovine NSP1 gene does not affect replication kinetics in the pig. , 1998, Virology.
[111] J. Childs,et al. The ascension of wildlife rabies: a cause for public health concern or intervention? , 1995, Emerging infectious diseases.
[112] B. Hillman,et al. A small mitochondrial double-stranded (ds) RNA element associated with a hypovirulent strain of the chestnut blight fungus and ancestrally related to yeast cytoplasmic T and W dsRNAs. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[113] D. Bisaro,et al. Replicational release of geminivirus genomes from tandemly repeated copies: evidence for rolling-circle replication of a plant viral DNA. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[114] H. Pereira,et al. NOVEL VIRUSES IN HUMAN FAECES , 1988, The Lancet.
[115] A. Neville,et al. SYNCYTIOTROPHOBLASTS IN MALIGNANT TESTICULAR TUMOURS , 1976, The Lancet.
[116] K. Buck,et al. Biophysical properties of Penicillium stoloniferum virus S. , 1973, The Journal of general virology.
[117] D. Happold. Mammals in Nigeria , 1972, Oryx.
[118] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[119] P. F. Vasconcelos,et al. Partial molecular characterization of alphaherpesviruses isolated from tropical bats. , 2009, The Journal of general virology.
[120] N. Kobayashi,et al. Genetic analysis of an ADRV-N-like novel rotavirus strain B219 detected in a sporadic case of adult diarrhea in Bangladesh , 2006, Archives of Virology.
[121] Andrew T. Price-Smith. Plagues and Politics: Infectious Disease and International Policy , 2001 .
[122] M. V. Regenmortel,et al. Virus taxonomy: classification and nomenclature of viruses. Seventh report of the International Committee on Taxonomy of Viruses. , 2000 .
[123] Philip W. Goetz. The New Encyclopaedia Britannica , 1991 .
[124] R. Nowak,et al. Walker's mammals of the world , 1968 .