Quinolone-resistant Escherichia coli at the interface between humans, poultry and their shared environment- a potential public health risk

[1]  E. Rocha,et al.  Phage-Plasmids Spread Antibiotic Resistance Genes through Infection and Lysogenic Conversion , 2022, bioRxiv.

[2]  N. Eynard,et al.  Repeated Exposure of Escherichia coli to High Ciprofloxacin Concentrations Selects gyrB Mutants That Show Fluoroquinolone-Specific Hyperpersistence , 2022, Frontiers in Microbiology.

[3]  Jian Sun,et al.  Identification of the Plasmid-Mediated Colistin Resistance Gene mcr-1 in Escherichia coli Isolates From Migratory Birds in Guangdong, China , 2021, Frontiers in Microbiology.

[4]  R. Rabello,et al.  Antimicrobial Resistance in Farm Animals in Brazil: An Update Overview. , 2020, Animals : an open access journal from MDPI.

[5]  J. Blanco,et al.  Whole Genome Sequencing and Characteristics of mcr-1–Harboring Plasmids of Porcine Escherichia coli Isolates Belonging to the High-Risk Clone O25b:H4-ST131 Clade B , 2020, Frontiers in Microbiology.

[6]  M. Achtman,et al.  The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity , 2019, Genome research.

[7]  I. Okeke,et al.  A large self-transmissible resistance plasmid from Nigeria contains genes that ameliorate a carrying cost , 2019, Scientific Reports.

[8]  A. Wong,et al.  The mutational landscape of quinolone resistance in Escherichia coli , 2019, PloS one.

[9]  J. Frye,et al.  Genetic Characterization of Antimicrobial-Resistant Escherichia coli Isolated from a Mixed-Use Watershed in Northeast Georgia, USA , 2019, International journal of environmental research and public health.

[10]  P. Leekitcharoenphon,et al.  Occurrence and Characterization of mcr-1-Positive Escherichia coli Isolated From Food-Producing Animals in Poland, 2011–2016 , 2019, Front. Microbiol..

[11]  A. Ouattara,et al.  Distribution of quinolone resistance gene (qnr) in ESBL-producing Escherichia coli and Klebsiella spp. in Lomé, Togo , 2019, Antimicrobial Resistance & Infection Control.

[12]  T. Johnson,et al.  Diverse Commensal Escherichia coli Clones and Plasmids Disseminate Antimicrobial Resistance Genes in Domestic Animals and Children in a Semirural Community in Ecuador , 2019, mSphere.

[13]  M. Norström,et al.  Occurrence and characterization of quinolone resistant Escherichia coli from Norwegian turkey meat and complete sequence of an IncX1 plasmid encoding qnrS1 , 2019, PloS one.

[14]  G. Bugla-Płoskońska,et al.  Virulence factors, prevalence and potential transmission of extraintestinal pathogenic Escherichia coli isolated from different sources: recent reports , 2019, Gut Pathogens.

[15]  I. Karunasagar,et al.  Plasmid-mediated fluoroquinolone resistance associated with extra-intestinal Escherichia coli isolates from hospital samples , 2019, The Indian journal of medical research.

[16]  T. O. Isola,et al.  Antimicrobial usage by pastoralists in food animals in North-central Nigeria: The associated socio-cultural drivers for antimicrobials misuse and public health implications , 2018, One health.

[17]  Ole Lund,et al.  Rapid and precise alignment of raw reads against redundant databases with KMA , 2018, BMC Bioinformatics.

[18]  S. Odonkor,et al.  Prevalence of Multidrug-Resistant Escherichia coli Isolated from Drinking Water Sources , 2018, International journal of microbiology.

[19]  M. F. Fernández Miyakawa,et al.  Simultaneous Carriage of mcr-1 and Other Antimicrobial Resistance Determinants in Escherichia coli From Poultry , 2018, Front. Microbiol..

[20]  E. Denamur,et al.  ClermonTyping: an easy-to-use and accurate in silico method for Escherichia genus strain phylotyping , 2018, Microbial genomics.

[21]  Xiaofei Shang,et al.  Characteristics of quinolone-resistant Escherichia coli isolated from bovine mastitis in China. , 2018, Journal of dairy science.

[22]  Y. Park,et al.  Mechanisms of quinolone resistance in Escherichia coli isolated from companion animals, pet-owners, and non-pet-owners , 2017, Journal of veterinary science.

[23]  J. E. Olsen,et al.  First Report on a Randomized Investigation of Antimicrobial Resistance in Fecal Indicator Bacteria from Livestock, Poultry, and Humans in Tanzania. , 2017, Microbial drug resistance.

[24]  M. Röderová,et al.  Quinolone-resistant Escherichia coli in Poultry Farming. , 2017, Central European journal of public health.

[25]  M. Ntemgwa,et al.  The threat of antimicrobial resistance in developing countries: causes and control strategies , 2017, Antimicrobial Resistance & Infection Control.

[26]  Constance Schultsz,et al.  Global phylogenetic analysis of Escherichia coli and plasmids carrying the mcr-1 gene indicates bacterial diversity but plasmid restriction , 2017, Scientific Reports.

[27]  Jian-Hua Liu,et al.  High Prevalence of Colistin Resistance and mcr-1 Gene in Escherichia coli Isolated from Food Animals in China , 2017, Front. Microbiol..

[28]  P. Sauer,et al.  Characteristics of Quinolone Resistance in Escherichia coli Isolates from Humans, Animals, and the Environment in the Czech Republic , 2017, Front. Microbiol..

[29]  J. Wu,et al.  Plasmid-mediated quinolone resistance determinants in quinolone-resistant Escherichia coli isolated from patients with bacteremia in a university hospital in Taiwan, 2001–2015 , 2016, Scientific Reports.

[30]  A. Oluwadun,et al.  Distribution of plasmid-mediated quinolone resistance in Gram-negative bacteria from a tertiary hospital in Nigeria , 2016, Indian journal of pathology & microbiology.

[31]  D. Satta,et al.  Clonal relationship between human and avian ciprofloxacin-resistant Escherichia coli isolates in North-Eastern Algeria , 2016, European Journal of Clinical Microbiology & Infectious Diseases.

[32]  E. Kristiansson,et al.  Resistance Mutations in gyrA and parC are Common in Escherichia Communities of both Fluoroquinolone-Polluted and Uncontaminated Aquatic Environments , 2015, Front. Microbiol..

[33]  G. Jacoby,et al.  Mechanisms of drug resistance: quinolone resistance , 2015, Annals of the New York Academy of Sciences.

[34]  H. Adesokan,et al.  Pattern of antimicrobial usage in livestock animals in south-western Nigeria: The need for alternative plans , 2015, The Onderstepoort journal of veterinary research.

[35]  Lei Shi,et al.  Detection of plasmid-mediated quinolone resistance determinants and qnrS expression in Enterobacteriaceae clinical isolates. , 2014, Journal of infection in developing countries.

[36]  I. Okeke,et al.  Dissemination of the Transmissible Quinolone-Resistance Gene qnrS1 by IncX Plasmids in Nigeria , 2014, PloS one.

[37]  Ole Lund,et al.  In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing , 2014, Antimicrobial Agents and Chemotherapy.

[38]  M. Agbaje,et al.  Antibiotic usage pattern in selected poultry farms in Ogun state , 2014 .

[39]  A. Rossi,et al.  Fluoroquinolone resistance and molecular characterization of gyrA and parC quinolone resistance-determining regions in Escherichia coli isolated from poultry. , 2014, Poultry science.

[40]  B. Nagy,et al.  Multidrug resistant commensal Escherichia coli in animals and its impact for public health , 2013, Front. Microbiol..

[41]  Tamoghna Biswas,et al.  How to Calculate Sample Size for Different Study Designs in Medical Research? , 2013, Indian journal of psychological medicine.

[42]  J. -. Kim,et al.  Prevalence and characterization of plasmid-mediated quinolone resistance genes in Salmonella isolated from poultry in Korea , 2013, Avian pathology : journal of the W.V.P.A.

[43]  L. Pokludová,et al.  Broilers as a source of quinolone-resistant and extraintestinal pathogenic Escherichia coli in the Czech Republic. , 2013, Microbial drug resistance.

[44]  A. Oluduro,et al.  Plasmid-mediated fluoroquinolone-resistance QnrA and QnrB genes among Escherichia coli from cattle in Ado-Ekiti, Nigeria. , 2012, The West Indian medical journal.

[45]  S. Rasmussen,et al.  Identification of acquired antimicrobial resistance genes , 2012, The Journal of antimicrobial chemotherapy.

[46]  Sergey I. Nikolenko,et al.  SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing , 2012, J. Comput. Biol..

[47]  Ole Lund,et al.  Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria , 2012, Journal of Clinical Microbiology.

[48]  A. Carattoli,et al.  Plasmid-mediated quinolone resistance and β-lactamases in Escherichia coli from healthy animals from Nigeria. , 2011, The Journal of antimicrobial chemotherapy.

[49]  E. Gunnarsson,et al.  Prevalence and Genetic Relatedness of Antimicrobial‐Resistant Escherichia coli Isolated From Animals, Foods and Humans in Iceland , 2010, Zoonoses and public health.

[50]  M. Kuskowski,et al.  Similarity between human and chicken Escherichia coli isolates in relation to ciprofloxacin resistance status. , 2006, The Journal of infectious diseases.

[51]  Daniel Falush,et al.  Sex and virulence in Escherichia coli: an evolutionary perspective , 2006, Molecular microbiology.

[52]  C. Torres,et al.  Mutations in gyrA and parC genes in nalidixic acid-resistant Escherichia coli strains from food products, humans and animals. , 2003, The Journal of antimicrobial chemotherapy.

[53]  V. Barbe,et al.  Adaptation in toxic environments: comparative genomics of loci carrying antibiotic resistance genes derived from acid mine drainage waters , 2017, Environmental Science and Pollution Research.

[54]  A. Jaran,et al.  Characterization of Ampicillin Resistant Gene (blaTEM-1) Isolated from E. coli in Northern Jordan , 2017 .

[55]  Ulrich Dobrindt,et al.  E. coli as an all-rounder: the thin line between commensalism and pathogenicity. , 2013, Current topics in microbiology and immunology.

[56]  Hilde van der Togt,et al.  Publisher's Note , 2003, J. Netw. Comput. Appl..

[57]  M. Ferraro Performance standards for antimicrobial susceptibility testing , 2001 .