FRED (A Framework for Reconstructing Epidemic Dynamics): an open-source software system for modeling infectious diseases and control strategies using census-based populations

[1]  Lauren Ancel Meyers,et al.  EpiFire: An open source C++ library and application for contact network epidemiology , 2012, BMC Bioinformatics.

[2]  Shanta M Zimmer,et al.  Vaccination deep into a pandemic wave potential mechanisms for a "third wave" and the impact of vaccination. , 2010, American journal of preventive medicine.

[3]  Philip C Cooley,et al.  Attribute Assignment to a Synthetic Population in Support of Agent-Based Disease Modeling. , 2010, Methods report.

[4]  Shawn T. Brown,et al.  A computer simulation of vaccine prioritization, allocation, and rationing during the 2009 H1N1 influenza pandemic. , 2010, Vaccine.

[5]  Shawn T. Brown,et al.  Would school closure for the 2009 H1N1 influenza epidemic have been worth the cost?: a computational simulation of Pennsylvania , 2011, BMC public health.

[6]  Aravind Srinivasan,et al.  Modelling disease outbreaks in realistic urban social networks , 2004, Nature.

[7]  Joshua M. Epstein,et al.  Containing a large bioterrorist smallpox attack: a computer simulation approach. , 2007, International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases.

[8]  J. Swann,et al.  System factors to explain H1N1 state vaccination rates for adults in US emergency response to pandemic. , 2014, Vaccine.

[9]  Joshua M. Epstein,et al.  Individual-based computational modeling of smallpox epidemic control strategies. , 2006, Academic emergency medicine : official journal of the Society for Academic Emergency Medicine.

[10]  Hong Zhou,et al.  Regional variation in mortality impact of the 2009 A(H1N1) influenza pandemic in China , 2013, Influenza and other respiratory viruses.

[11]  Shawn T. Brown,et al.  Simulating school closure strategies to mitigate an influenza epidemic. , 2010, Journal of public health management and practice : JPHMP.

[12]  Dimiter Dobrev,et al.  Computer Simulation , 1966, J. Inf. Process. Cybern..

[13]  Bard Ermentrout,et al.  Local Variations in Spatial Synchrony of Influenza Epidemics , 2012, PloS one.

[14]  M. Halloran,et al.  School opening dates predict pandemic influenza A(H1N1) outbreaks in the United States. , 2010, The Journal of infectious diseases.

[15]  Laxminarayana Ganapathi,et al.  Synthesized Population Databases: A US Geospatial Database for Agent-Based Models. , 2009, Methods report.

[16]  Shawn T. Brown,et al.  The Role of Subway Travel in an Influenza Epidemic: A New York City Simulation , 2011, Journal of Urban Health.

[17]  A. Flahault,et al.  Estimating the impact of school closure on influenza transmission from Sentinel data , 2008, Nature.

[18]  Elizabeth A. Casman,et al.  Incorporating individual health-protective decisions into disease transmission models: a mathematical framework , 2012, Journal of The Royal Society Interface.

[19]  C. Macken,et al.  Modeling targeted layered containment of an influenza pandemic in the United States , 2008, Proceedings of the National Academy of Sciences.

[20]  John J. Grefenstette,et al.  FRED Navigator: An interactive system for visualizing results from large-scale epidemic simulations , 2012, 2012 IEEE 8th International Conference on E-Science.

[21]  Paul Damien,et al.  Simulating school closure policies for cost effective pandemic decision making , 2012, BMC Public Health.

[22]  Jon Parker,et al.  A Distributed Platform for Global-Scale Agent-Based Models of Disease Transmission , 2011, TOMC.

[23]  Dennis L. Chao,et al.  FluTE, a Publicly Available Stochastic Influenza Epidemic Simulation Model , 2010, PLoS Comput. Biol..

[24]  E. Nsoesie,et al.  Sensitivity Analysis of an Individual-Based Model for Simulation of Influenza Epidemics , 2012, PloS one.

[25]  Joshua M. Epstein,et al.  Controlling Pandemic Flu: The Value of International Air Travel Restrictions , 2007, PloS one.

[26]  K. Nichol,et al.  Effect of influenza-like illness and other wintertime respiratory illnesses on worker productivity: The child and household influenza-illness and employee function (CHIEF) study. , 2010, Vaccine.

[27]  John J. Grefenstette,et al.  Toward an integrated meta-model of public health dynamics for preparedness decision support. , 2013, Journal of public health management and practice : JPHMP.

[28]  D. Wagener,et al.  Prevalence of high-risk indications for influenza vaccine varies by age, race, and income. , 2010, Vaccine.

[29]  Shanta M Zimmer,et al.  The benefits to all of ensuring equal and timely access to influenza vaccines in poor communities. , 2011, Health affairs.

[30]  J. Paul.  BMC public health. , 2012, World health & population.

[31]  M. D. McKay,et al.  Creating synthetic baseline populations , 1996 .

[32]  C. Fraser,et al.  Household transmission of 2009 pandemic influenza A (H1N1) virus in the United States. , 2009, The New England journal of medicine.

[33]  D. Wagener,et al.  Protecting health care workers: a pandemic simulation based on Allegheny County , 2010, Influenza and other respiratory viruses.

[34]  John J. Grefenstette,et al.  A computer simulation of employee vaccination to mitigate an influenza epidemic. , 2010, American journal of preventive medicine.

[35]  Bard Ermentrout,et al.  Local Spatial and Temporal Processes of Influenza in Pennsylvania, USA: 2003–2009 , 2012, PloS one.

[36]  John J. Grefenstette,et al.  A game dynamic model for vaccine skeptics and vaccine believers: measles as an example. , 2012, Journal of theoretical biology.

[37]  Elizabeth A. Casman,et al.  Deriving Behavior Model Parameters from Survey Data: Self‐Protective Behavior Adoption During the 2009–2010 Influenza A(H1N1) Pandemic , 2012, Risk analysis : an official publication of the Society for Risk Analysis.

[38]  Donald S Burke,et al.  Policies to reduce influenza in the workplace: impact assessments using an agent-based model. , 2013, American journal of public health.

[39]  S. Wisniewski,et al.  Reduction in the Incidence of Influenza A But Not Influenza B Associated With Use of Hand Sanitizer and Cough Hygiene in Schools: A Randomized Controlled Trial , 2011, The Pediatric infectious disease journal.

[40]  D. Cummings,et al.  Strategies for containing an emerging influenza pandemic in Southeast Asia , 2005, Nature.

[41]  Stefano Merler,et al.  Determinants of the Spatiotemporal Dynamics of the 2009 H1N1 Pandemic in Europe: Implications for Real-Time Modelling , 2011, PLoS Comput. Biol..

[42]  D. Cummings,et al.  Strategies for mitigating an influenza pandemic , 2006, Nature.

[43]  J. Cheek,et al.  Severe acute respiratory infections caused by 2009 pandemic influenza A (H1N1) among American Indians—southwestern United States, May 1–July 21, 2009 , 2013, Influenza and other respiratory viruses.

[44]  M. Keeling,et al.  Modeling Infectious Diseases in Humans and Animals , 2007 .