BAF53/Arp4 homolog Alp5 in fission yeast is required for histone H4 acetylation, kinetochore-spindle attachment, and gene silencing at centromere.

Nuclear actin-related proteins play vital roles in transcriptional regulation; however, their biological roles remain elusive. Here, we characterize Alp5, fission yeast homolog of Arp4/BAF53. The temperature-sensitive mutant alp5-1134 contains a single amino acid substitution in the conserved C-terminal domain (S402N) and displays mitotic phenotypes, including chromosome condensation and missegregation. Alp5 forms a complex with Mst1-HAT (histone acetyltransferase). Consistently, inhibition of histone deacetylases (HDACs), by either addition of a specific inhibitor or a mutation in HDAC-encoding clr6+ gene, rescues alp5-1134. Immunoblotting with specific antibodies against acetylated histones shows that Alp5 is required for histone H4 acetylation at lysines 5, 8, and 12, but not histone H3 lysines 9 or 14, and furthermore Clr6 plays an opposing role. Mitotic arrest is ascribable to activation of the Mad2/Bub1 spindle checkpoint, in which both proteins localize to the mitotic kinetochores in alp5-1134. Intriguingly, alp5-1134 displays transcriptional desilencing at the core centromere without altering the overall chromatin structure, which also is suppressed by a simultaneous mutation in clr6+. This result shows that Alp5 is essential for histone H4 acetylation, and its crucial role lies in the establishment of bipolar attachment of the kinetochore to the spindle and transcriptional silencing at the centromere.

[1]  R. Allshire,et al.  Analysis of chromatin in fission yeast. , 2004, Methods.

[2]  Jacques Côté,et al.  The highly conserved and multifunctional NuA4 HAT complex. , 2004, Current opinion in genetics & development.

[3]  Andrew J Link,et al.  A Protein Complex Containing the Conserved Swi2/Snf2-Related ATPase Swr1p Deposits Histone Variant H2A.Z into Euchromatin , 2004, PLoS biology.

[4]  Song Tan,et al.  Structural and Functional Conservation of the NuA4 Histone Acetyltransferase Complex from Yeast to Humans , 2004, Molecular and Cellular Biology.

[5]  Wei-Hua Wu,et al.  ATP-Driven Exchange of Histone H2AZ Variant Catalyzed by SWR1 Chromatin Remodeling Complex , 2004, Science.

[6]  Y. Murakami,et al.  Fission yeast Arp6 is required for telomere silencing, but functions independently of Swi6. , 2004, Nucleic acids research.

[7]  K. Kuchler,et al.  The nuclear actin‐related protein Act3p/Arp4p of Saccharomyces cerevisiae is involved in transcription regulation of stress genes , 2003, Molecular microbiology.

[8]  M. Grunstein,et al.  Centromere Silencing and Function in Fission Yeast Is Governed by the Amino Terminus of Histone H3 , 2003, Current Biology.

[9]  T. Toda,et al.  Deletion of Mia1/Alp7 activates Mad2-dependent spindle assembly checkpoint in fission yeast , 2003, Nature Cell Biology.

[10]  D. Moazed,et al.  Sir2 Regulates Histone H3 Lysine 9 Methylation and Heterochromatin Assembly in Fission Yeast , 2003, Current Biology.

[11]  Carl Wu,et al.  Involvement of actin-related proteins in ATP-dependent chromatin remodeling. , 2003, Molecular cell.

[12]  R. Kobayashi,et al.  Alp13, an MRG family protein, is a component of fission yeast Clr6 histone deacetylase required for genomic integrity , 2003, The EMBO journal.

[13]  Song Tan,et al.  Yeast enhancer of polycomb defines global Esa1-dependent acetylation of chromatin. , 2003, Genes & development.

[14]  F. Dequiedt,et al.  Class II histone deacetylases: versatile regulators. , 2003, Trends in genetics : TIG.

[15]  William A. Richardson,et al.  Sim4: a novel fission yeast kinetochore protein required for centromeric silencing and chromosome segregation. , 2003, The Journal of cell biology.

[16]  K. Sullivan,et al.  Centromeres and Kinetochores From Epigenetics to Mitotic Checkpoint Signaling , 2003, Cell.

[17]  R. Allshire,et al.  The Mal2p Protein Is an Essential Component of the Fission Yeast Centromere , 2002, Molecular and Cellular Biology.

[18]  Alexander W. Bird,et al.  Acetylation of histone H4 by Esa1 is required for DNA double-strand break repair , 2002, Nature.

[19]  A. Caudy,et al.  Functional Divergence between Histone Deacetylases in Fission Yeast by Distinct Cellular Localization and In Vivo Specificity , 2002, Molecular and Cellular Biology.

[20]  W. Hawse,et al.  Molecular evolution of the actin family. , 2002, Journal of cell science.

[21]  Tomoyuki U. Tanaka Bi-orienting chromosomes on the mitotic spindle. , 2002, Current opinion in cell biology.

[22]  Ioannis Xenarios,et al.  Microarray Deacetylation Maps Determine Genome-Wide Functions for Yeast Histone Deacetylases , 2002, Cell.

[23]  Tomohiro Matsumoto,et al.  Control of localization of a spindle checkpoint protein, Mad2, in fission yeast. , 2002, Journal of cell science.

[24]  D. Stillman,et al.  Correlation between chromatin association and transcriptional regulation for the Act3p/Arp4 nuclear actin-related protein of Saccharomyces cerevisiae. , 2002, Nucleic acids research.

[25]  A. Caudy,et al.  Functional Divergence between Histone Deacetylases in Fission Yeast by Distinct Cellular Localization and In Vivo Specificity , 2002, Molecular and Cellular Biology.

[26]  P. Janmey,et al.  Phosphatidylinositol-dependent actin filament binding by the SWI/SNF-like BAF chromatin remodeling complex , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[27]  G. Goshima,et al.  Requirement of Chromatid Cohesion Proteins Rad21/Scc1 and Mis4/Scc2 for Normal Spindle-Kinetochore Interaction in Fission Yeast , 2002, Current Biology.

[28]  Yasushi Hiraoka,et al.  A conserved protein, Nuf2, is implicated in connecting the centromere to the spindle during chromosome segregation: a link between the kinetochore function and the spindle checkpoint , 2001, Chromosoma.

[29]  J Wu,et al.  Highly specific antibodies determine histone acetylation site usage in yeast heterochromatin and euchromatin. , 2001, Molecular cell.

[30]  T. Toda,et al.  Fission yeast ch‐TOG/XMAP215 homologue Alp14 connects mitotic spindles with the kinetochore and is a component of the Mad2‐dependent spindle checkpoint , 2001, The EMBO journal.

[31]  Leslie Wilson,et al.  Mammalian mad2 and bub1/bubR1 recognize distinct spindle-attachment and kinetochore-tension checkpoints , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[32]  S. Schreiber,et al.  Genomewide studies of histone deacetylase function in yeast. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[33]  M. Yanagida,et al.  Cut8, essential for anaphase, controls localization of 26S proteasome, facilitating destruction of cyclin and Cut2 , 2000, Current Biology.

[34]  Jun Qin,et al.  Involvement of the TIP60 Histone Acetylase Complex in DNA Repair and Apoptosis , 2000, Cell.

[35]  Ali Hamiche,et al.  A chromatin remodelling complex involved in transcription and DNA processing , 2000, Nature.

[36]  M. Yanagida,et al.  Requirement of Mis6 centromere connector for localizing a CENP-A-like protein in fission yeast. , 2000, Science.

[37]  D. Sterner,et al.  Acetylation of Histones and Transcription-Related Factors , 2000, Microbiology and Molecular Biology Reviews.

[38]  D. Stillman,et al.  Multiple links between the NuA4 histone acetyltransferase complex and epigenetic control of transcription. , 2000, Molecular cell.

[39]  C. Allis,et al.  The language of covalent histone modifications , 2000, Nature.

[40]  J. M. Sherman,et al.  The Schizosaccharomyces pombe hst4(+) gene is a SIR2 homologue with silencing and centromeric functions. , 1999, Molecular biology of the cell.

[41]  P. Grant,et al.  NuA4, an essential transcription adaptor/histone H4 acetyltransferase complex containing Esa1p and the ATM‐related cofactor Tra1p , 1999, The EMBO journal.

[42]  K. Hardwick,et al.  Fission Yeast Bub1 Is a Mitotic Centromere Protein Essential for the Spindle Checkpoint and the Preservation of Correct Ploidy through Mitosis , 1998, The Journal of cell biology.

[43]  Keji Zhao,et al.  Rapid and Phosphoinositol-Dependent Binding of the SWI/SNF-like BAF Complex to Chromatin after T Lymphocyte Receptor Signaling , 1998, Cell.

[44]  M. Yoshida,et al.  phd1 +, a histone deacetylase gene of Schizosaccharomyces pombe, is required for the meiotic cell cycle and resistance to trichostatin A 1 , 1998, FEBS letters.

[45]  S. Grewal,et al.  Histone deacetylase homologs regulate epigenetic inheritance of transcriptional silencing and chromosome segregation in fission yeast. , 1998, Genetics.

[46]  P. Philippsen,et al.  Heterologous modules for efficient and versatile PCR‐based gene targeting in Schizosaccharomyces pombe , 1998, Yeast.

[47]  Per Sunnerhagen,et al.  Genetic characterisation of hda1+, a putative fission yeast histone deacetylase gene , 1998, Nucleic Acids Res..

[48]  Dai Hirata,et al.  Identification of Novel Temperature-sensitive Lethal Alleles in Essential β-Tubulin and Nonessential α2-Tubulin Genes as Fission Yeast Polarity Mutants , 1998 .

[49]  A. Murray,et al.  Localization of Mad2 to Kinetochores Depends on Microtubule Attachment, Not Tension , 1998, The Journal of cell biology.

[50]  B. Turner,et al.  Transient Inhibition of Histone Deacetylation Alters the Structural and Functional Imprint at Fission Yeast Centromeres , 1997, Cell.

[51]  M. Grunstein Histone acetylation in chromatin structure and transcription , 1997, Nature.

[52]  M. Yanagida,et al.  Mis6, a Fission Yeast Inner Centromere Protein, Acts during G1/S and Forms Specialized Chromatin Required for Equal Segregation , 1997, Cell.

[53]  M. Yaniv,et al.  Purification and biochemical heterogeneity of the mammalian SWI‐SNF complex. , 1996, The EMBO journal.

[54]  G. Crabtree,et al.  Diversity and specialization of mammalian SWI/SNF complexes. , 1996, Genes & development.

[55]  D. Stillman,et al.  Epigenetic effects on yeast transcription caused by mutations in an actin-related protein present in the nucleus. , 1996, Genes & development.

[56]  E. Nimmo,et al.  Mutations derepressing silent centromeric domains in fission yeast disrupt chromosome segregation. , 1995, Genes & development.

[57]  G. Thon,et al.  Three additional linkage groups that repress transcription and meiotic recombination in the mating-type region of Schizosaccharomyces pombe. , 1994, Genetics.

[58]  M. Harata,et al.  An essential gene of Saccharomyces cerevisiae coding for an actin-related protein. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[59]  R. Allshire,et al.  Position effect variegation at fission yeast centromeres , 1994, Cell.

[60]  O. Niwa,et al.  A low copy number central sequence with strict symmetry and unusual chromatin structure in fission yeast centromere. , 1992, Molecular biology of the cell.

[61]  L. Clarke,et al.  The chromatin structure of centromeres from fission yeast: differentiation of the central core that correlates with function , 1991, The Journal of cell biology.

[62]  Minoru Yoshida,et al.  [Potent and specific inhibition of mammalian histone deacetylase both in vivo and in vitro by trichostatin A]. , 1990, Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme.

[63]  W. Kabsch,et al.  Atomic structure of the actin: DNase I complex , 1990, Nature.

[64]  O. Niwa,et al.  Characterization of Schizosaccharomyces pombe minichromosome deletion derivatives and a functional allocation of their centromere. , 1989, The EMBO journal.

[65]  Samara L. Reck-Peterson,et al.  Nuclear actin and actin-related proteins in chromatin remodeling. , 2002, Annual review of biochemistry.

[66]  C. Allis,et al.  Histone acetyltransferases. , 2001, Annual review of biochemistry.

[67]  J. Workman,et al.  Alteration of nucleosome structure as a mechanism of transcriptional regulation. , 1998, Annual review of biochemistry.