GeneticAnalysis of the Capsule Locus of Haemophilus influenzaeSerotypef

ABSTRACT A 19-kb DNA region containing genes involved in the biosynthesis of the capsule of Haemophilus influenzae serotype f (Hif) has been cloned and characterized. The Hif cap locus organization is typical of group II capsule biosynthetic loci found in other H. influenzae serotype b bacteria and other gram-negative bacteria. However, the Hif cap locus was not associated with an IS1016 element. Three new open reading frames, Fcs1, Fcs2, and Fcs3, were identified in the Hif capsule-specific region II. The chromosomal location of the Hif cap locus and the organization of the flanking sequences differed significantly from previously described division I H. influenzae serotypes.

[1]  M. Zacharisen,et al.  Rapidly fatal Haemophilus influenzae serotype f sepsis in a healthy child. , 2003, The Journal of infection.

[2]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[3]  M. Farley,et al.  Invasive disease due to Haemophilus influenzae serotype f: clinical and epidemiologic characteristics in the H. influenzae serotype b vaccine era. The Haemophilus influenzae Study Group. , 1996, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[4]  P. Langford,et al.  Copper-zinc superoxide dismutase in Haemophilus species. , 1992, Journal of general microbiology.

[5]  D. Lipman,et al.  A genomic perspective on protein families. , 1997, Science.

[6]  M. Farley,et al.  Complete Sequence of the cap Locus of Haemophilus influenzae Serotype b and Nonencapsulated b Capsule-Negative Variants , 2003, Infection and Immunity.

[7]  Lewis Y. Geer,et al.  CDART: protein homology by domain architecture. , 2002, Genome research.

[8]  R. Fleischmann,et al.  Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. , 1995, Science.

[9]  Michael Y. Galperin,et al.  The COG database: new developments in phylogenetic classification of proteins from complete genomes , 2001, Nucleic Acids Res..

[10]  A. Kalloghlian,et al.  Endocarditis due to Haemophilus influenzae serotype f. , 1996, Clinical Infectious Diseases.

[11]  A. Goffeau,et al.  The complete genome sequence of the Gram-positive bacterium Bacillus subtilis , 1997, Nature.

[12]  M. Veiga-da-Cunha,et al.  acs1 of Haemophilus influenzae Type a Capsulation Locus Region II Encodes a Bifunctional Ribulose 5-Phosphate Reductase– CDP-Ribitol Pyrophosphorylase , 1999, Journal of bacteriology.

[13]  D. Maskell,et al.  PCR for capsular typing of Haemophilus influenzae , 1994, Journal of clinical microbiology.

[14]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[15]  C. Connelly,et al.  Genetics of spontaneous, high-frequency loss of b capsule expression in Haemophilus influenzae , 1985, Infection and immunity.

[16]  P. Langford,et al.  Copper-zinc superoxide dismutase of Haemophilus influenzae and H. parainfluenzae , 1991, Journal of bacteriology.

[17]  M. Pittman VARIATION AND TYPE SPECIFICITY IN THE BACTERIAL SPECIES HEMOPHILUS INFLUENZAE , 1931, The Journal of experimental medicine.

[18]  M. Frosch,et al.  Phospholipid substitution of capsular polysaccharides and mechanisms of capsule formation in Neisseria meningitidis , 1993, Molecular microbiology.

[19]  E. Moxon,et al.  Region II of the Haemophilus influenzae Type b capsulation locus as involved in serotype‐specific polysaccharide synthesis , 1995, Molecular microbiology.

[20]  J. Musser,et al.  Global genetic structure and molecular epidemiology of encapsulated Haemophilus influenzae. , 1990, Reviews of infectious diseases.

[21]  John B. Anderson,et al.  CDD: a curated Entrez database of conserved domain alignments , 2003, Nucleic Acids Res..

[22]  T. Falla,et al.  The elucidation of novel capsular genotypes of Haemophilus influenzae type b with the polymerase chain reaction. , 1995, Journal of medical microbiology.

[23]  J. Musser,et al.  Evolutionary genetics of the encapsulated strains of Haemophilus influenzae. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[24]  D. Musher,et al.  Haemophilus influenzae infections in adults: characterization of strains by serotypes, biotypes, and beta-lactamase production. , 1981, The Journal of infectious diseases.

[25]  Benjamin A. Shoemaker,et al.  CDD: a database of conserved domain alignments with links to domain three-dimensional structure , 2002, Nucleic Acids Res..

[26]  E. Moxon,et al.  The bex locus in encapsulated Haemophilus influenzae: a chromosomal region involved in capsule polysaccharide export , 1990, Molecular microbiology.

[27]  E. Moxon,et al.  Genes involved in Haemophilus influenzae type b capsule expression are part of an 18-kilobase tandem duplication. , 1986, Proceedings of the National Academy of Sciences of the United States of America.

[28]  M. Kleerebezem,et al.  Exopolysaccharide Biosynthesis in Lactococcus lactis NIZO B40: Functional Analysis of the Glycosyltransferase Genes Involved in Synthesis of the Polysaccharide Backbone , 1999, Journal of bacteriology.

[29]  Eugene W. Myers,et al.  Basic local alignment search tool. Journal of Molecular Biology , 1990 .

[30]  E. Moxon,et al.  The role of bacterial polysaccharide capsules as virulence factors. , 1990, Current topics in microbiology and immunology.

[31]  E. Moxon,et al.  The Haemophilus influenzae capsulation gene cluster: a compound transposon , 1991, Molecular microbiology.

[32]  I. Fridovich,et al.  Superoxide dismutases. , 1975, Annual review of biochemistry.

[33]  M. Kostrzynska,et al.  Analysis of the Capsule Biosynthetic Locus ofMannheimia (Pasteurella)haemolytica A1 and Proposal of a Nomenclature System , 2001, Infection and Immunity.

[34]  D. Stephens,et al.  Genetic Basis for Biosynthesis of the(α1→4)-LinkedN-Acetyl-d-Glucosamine 1-Phosphate Capsuleof Neisseria meningitidis SerogroupX , 2003, Infection and Immunity.

[35]  Thomas L. Madden,et al.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.

[36]  G. Istre,et al.  Bacteremic disease due to Haemophilus influenzae capsular type f in adults: report of five cases and review. , 1990, Reviews of infectious diseases.

[37]  D. Stephens,et al.  Characterization of the Gene Cassette Required for Biosynthesis of the (α1→6)-LinkedN-Acetyl-d-Mannosamine-1-Phosphate Capsule of Serogroup A Neisseria meningitidis , 1998, Journal of bacteriology.

[38]  B. Claesson,et al.  Incidence, predisposing factors and manifestations of invasiveHaemophilus influenzae infections in adults , 1984, European Journal of Clinical Microbiology.

[39]  H. Hassan Microbial superoxide dismutases. , 1989, Advances in genetics.

[40]  E. Moxon,et al.  Common organization of chromosomal loci for production of different capsular polysaccharides in Haemophilus influenzae , 1989, Journal of bacteriology.

[41]  E. Moxon,et al.  Capsulation and gene copy number at the cap locus of Haemophilus influenzae type b , 1988, Journal of bacteriology.

[42]  S. Yale,et al.  Haemophilus influenzae serotype f: an unusual cause of a mycotic aneurysm in an adult. , 1994, Mayo Clinic proceedings.

[43]  P. Langford,et al.  Palindromic Haemophilus DNA uptake sequences in presumed transcriptional terminators from H. influenzae and H. parainfluenzae. , 1992, Gene.

[44]  T. Read,et al.  Copy Number of Pilus Gene Clusters inHaemophilus influenzae and Variation in the hifEPilin Gene , 1998, Infection and Immunity.