Inference of Population Structure using Dense Haplotype Data
暂无分享,去创建一个
[1] E. Bacon. The Inquiry into the History of the Hazara Mongols of Afghanistan , 1951, Southwestern Journal of Anthropology.
[2] C. Auerbach,et al. Genetical Research , 1960, Nature.
[3] G. A. Watterson. On the number of segregating sites in genetical models without recombination. , 1975, Theoretical population biology.
[4] D. Rubin,et al. Maximum likelihood from incomplete data via the EM - algorithm plus discussions on the paper , 1977 .
[5] P. Menozzi,et al. Synthetic maps of human gene frequencies in Europeans. , 1978, Science.
[6] Lawrence R. Rabiner,et al. A tutorial on hidden Markov models and selected applications in speech recognition , 1989, Proc. IEEE.
[7] Dani Gamerman,et al. Markov Chain Monte Carlo: Stochastic Simulation for Bayesian Inference , 1997 .
[8] D. Schaid. Mathematical and Statistical Methods for Genetic Analysis , 1999 .
[9] P. Donnelly,et al. Inference of population structure using multilocus genotype data. , 2000, Genetics.
[10] A Vignal,et al. Empirical evaluation of genetic clustering methods using multilocus genotypes from 20 chicken breeds. , 2001, Genetics.
[11] K J Dawson,et al. A Bayesian approach to the identification of panmictic populations and the assignment of individuals. , 2001, Genetical research.
[12] Peter Donnelly,et al. Assessing population differentiation and isolation from single‐nucleotide polymorphism data , 2002 .
[13] M. Feldman,et al. Genetic Structure of Human Populations , 2002, Science.
[14] Richard R. Hudson,et al. Generating samples under a Wright-Fisher neutral model of genetic variation , 2002, Bioinform..
[15] M. Stephens,et al. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. , 2003, Genetics.
[16] M. Stephens,et al. Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. , 2003, Genetics.
[17] M. Feldman,et al. Features of evolution and expansion of modern humans, inferred from genomewide microsatellite markers. , 2003, American journal of human genetics.
[18] D. B. Dahl. An improved merge-split sampler for conjugate dirichlet process mixture models , 2003 .
[19] M. Sillanpää,et al. Bayesian analysis of genetic differentiation between populations. , 2003, Genetics.
[20] T. Niu. Algorithms for inferring haplotypes , 2004, Genetic epidemiology.
[21] Yungang He,et al. Genetic evidence supports demic diffusion of Han culture , 2004, Nature.
[22] P. Donnelly,et al. Comparison of Fine-Scale Recombination Rates in Humans and Chimpanzees , 2005, Science.
[23] G. McVean,et al. Approximating the coalescent with recombination , 2005, Philosophical Transactions of the Royal Society B: Biological Sciences.
[24] Arnaud Estoup,et al. A Spatial Statistical Model for Landscape Genetics , 2005, Genetics.
[25] N. Risch,et al. Estimation of individual admixture: Analytical and study design considerations , 2005, Genetic epidemiology.
[26] D. Reich,et al. Population Structure and Eigenanalysis , 2006, PLoS genetics.
[27] N. Risch,et al. Reconstructing genetic ancestry blocks in admixed individuals. , 2006, American journal of human genetics.
[28] D. Reich,et al. Principal components analysis corrects for stratification in genome-wide association studies , 2006, Nature Genetics.
[29] J. Pella,et al. The Gibbs and splitmerge sampler for population mixture analysis from genetic data with incomplete baselines , 2006 .
[30] D. Conrad,et al. A worldwide survey of haplotype variation and linkage disequilibrium in the human genome , 2006, Nature Genetics.
[31] Paul Scheet,et al. A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. , 2006, American journal of human genetics.
[32] J. Huelsenbeck,et al. Inference of Population Structure Under a Dirichlet Process Model , 2007, Genetics.
[33] L. Cavalli-Sforza,et al. The mystery of Etruscan origins: novel clues from Bos taurus mitochondrial DNA , 2007, Proceedings of the Royal Society B: Biological Sciences.
[34] Zhaohui S. Qin,et al. A second generation human haplotype map of over 3.1 million SNPs , 2007, Nature.
[35] B. Browning,et al. Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. , 2007, American journal of human genetics.
[36] Daniel Falush,et al. Inferring Human Colonization History Using a Copying Model , 2008, PLoS genetics.
[37] E. Halperin,et al. Estimating Local Ancestry in Admixed Populations , 2022 .
[38] Zachary A. Szpiech,et al. Genotype, haplotype and copy-number variation in worldwide human populations , 2008, Nature.
[39] M. Feldman,et al. Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation , 2008 .
[40] S. E. Ahmed,et al. Markov Chain Monte Carlo: Stochastic Simulation for Bayesian Inference , 2008, Technometrics.
[41] Amit R. Indap,et al. Genes mirror geography within Europe , 2008, Nature.
[42] Ryan D. Hernandez,et al. A flexible forward simulator for populations subject to selection and demography , 2008, Bioinform..
[43] M. Stephens,et al. Interpreting principal component analyses of spatial population genetic variation , 2008, Nature Genetics.
[44] David H. Alexander,et al. Fast model-based estimation of ancestry in unrelated individuals. , 2009, Genome research.
[45] Alkes L. Price,et al. Reconstructing Indian Population History , 2009, Nature.
[46] Flora Jay,et al. Spatial inference of admixture proportions and secondary contact zones. , 2009, Molecular biology and evolution.
[47] D. Reich,et al. Sensitive Detection of Chromosomal Segments of Distinct Ancestry in Admixed Populations , 2009, PLoS genetics.
[48] Scott M. Williams,et al. The Genetic Structure and History of Africans and African Americans , 2009, Science.
[49] Joseph K. Pickrell,et al. Signals of recent positive selection in a worldwide sample of human populations. , 2009, Genome research.
[50] G. McVean. A Genealogical Interpretation of Principal Components Analysis , 2009, PLoS genetics.
[51] P. Donnelly,et al. The coalescent and its descendants , 2010, 1006.1514.
[52] P. Donnelly,et al. The coalescent and its descendants , 2010, 1006.1514.
[53] D. Altshuler,et al. A map of human genome variation from population-scale sequencing , 2010, Nature.
[54] F. Balloux,et al. Discriminant analysis of principal components: a new method for the analysis of genetically structured populations , 2010, BMC Genetics.
[55] M. Stephens,et al. Analysis of Population Structure: A Unifying Framework and Novel Methods Based on Sparse Factor Analysis , 2010, PLoS genetics.
[56] B. Weir,et al. Population Structure With Localized Haplotype Clusters , 2010, Genetics.
[57] Stephen R Quake,et al. Whole-genome molecular haplotyping of single cells , 2011, Nature Biotechnology.
[58] Andrew C. Adey,et al. Haplotype-resolved genome sequencing of a Gujarati Indian individual , 2011, Nature Biotechnology.
[59] Emmanouil Collab. A map of human genome variation from population-scale sequencing , 2011, Nature.
[60] M. Jakobsson,et al. Combining Markers into Haplotypes Can Improve Population Structure Inference , 2012, Genetics.