Mathematical models of cytotoxic effects in endpoint tumor cell line assays: critical assessment of the application of a single parametric value as a standard criterion to quantify the dose-response effects and new unexplored proposal formats.
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Ricardo C Calhelha | Mireia A Martínez | M A Prieto | Isabel C F R Ferreira | M. Prieto | I. Ferreira | R. Calhelha | Mireia Martínez | I. Ferreira | Miguel A. Prieto | M. A. Prieto
[1] C. Winsor,et al. The Gompertz Curve as a Growth Curve. , 1932, Proceedings of the National Academy of Sciences of the United States of America.
[2] Mohammad Fallahi-Sichani,et al. Metrics other than potency reveal systematic variation in responses to cancer drugs. , 2013, Nature chemical biology.
[3] J. Gibbs. Mechanism-based target identification and drug discovery in cancer research. , 2000, Science.
[4] M. Murado,et al. The notion of hormesis and the dose-response theory: a unified approach. , 2007, Journal of theoretical biology.
[5] Brian A. Nosek,et al. An open investigation of the reproducibility of cancer biology research , 2014, eLife.
[6] M. Prieto,et al. Hydrolysis optimization of mannan, curdlan and cell walls from Endomyces fibuliger grown in mussel processing wastewaters , 2011 .
[7] W. Weibull. A statistical theory of the strength of materials , 1939 .
[8] P. Rosin. The Laws Governing the Fineness of Powdered Coal , 1933 .
[9] M. Prieto,et al. A critical point: the problems associated with the variety of criteria to quantify the antioxidant capacity. , 2014, Journal of agricultural and food chemistry.
[10] A. Tsoularis,et al. Analysis of logistic growth models. , 2002, Mathematical biosciences.
[11] P. Verhulst. Recherches mathématiques sur la loi d’accroissement de la population , 2022, Nouveaux mémoires de l'Académie royale des sciences et belles-lettres de Bruxelles.
[12] M. Forster,et al. Key Concepts in Model Selection: Performance and Generalizability. , 2000, Journal of mathematical psychology.
[13] R. Goody,et al. The original Michaelis constant: translation of the 1913 Michaelis-Menten paper. , 2011, Biochemistry.
[14] David L. Wilson,et al. The analysis of survival (mortality) data: Fitting Gompertz, Weibull, and logistic functions , 1994, Mechanisms of Ageing and Development.
[15] P. Sorger,et al. Growth rate inhibition metrics correct for confounders in measuring sensitivity to cancer drugs , 2016, Nature Methods.
[16] D. Rodbard,et al. Simultaneous analysis of families of sigmoidal curves: application to bioassay, radioligand assay, and physiological dose-response curves. , 1978, The American journal of physiology.
[17] Ana Maria Carvalho,et al. Chemical composition of wild and commercial Achillea millefolium L. and bioactivity of the methanolic extract, infusion and decoction. , 2013, Food chemistry.
[18] Tyler Sa,et al. Dynamics of normal growth. , 1965 .
[19] M. Delignette-Muller,et al. Estimating the bacterial lag time: which model, which precision? , 2004, International journal of food microbiology.
[20] Joshua A. Bittker,et al. Correlating chemical sensitivity and basal gene expression reveals mechanism of action , 2015, Nature chemical biology.
[21] A. Hill. The Combinations of Haemoglobin with Oxygen and with Carbon Monoxide. I. , 1913, The Biochemical journal.
[22] R. D. Berger. Comparison of the Gompertz and Logistic Equations to Describe Plant Disease Progress , 1981 .
[23] J. Lorenzo,et al. Evaluation of non-linear equations to model different animal growths with mono and bisigmoid profiles. , 2012, Journal of theoretical biology.
[24] P. Polese,et al. SOLVERSTAT: a new utility for multipurpose analysis. An application to the investigation of dioxygenated Co(II) complex formation in dimethylsulfoxide solution. , 2003, Talanta.
[25] A. Anderson,et al. Evolution of cell motility in an individual-based model of tumour growth. , 2009, Journal of theoretical biology.
[26] Smirnov Ip. The organizing function of medical technology in public health , 1972 .
[27] José Antonio Vázquez,et al. Dose-response relationships: an overview, a generative model and its application to the verification of descriptive models , 2002 .
[28] F. Rombouts,et al. Modeling of the Bacterial Growth Curve , 1990, Applied and environmental microbiology.
[29] Marcello Farina,et al. Modular model of TNFα cytotoxicity , 2011, Bioinform..
[30] Francisco Taboada,et al. Comparative study of four sigmoid models of pressure-volume curve in acute lung injury , 2007, Biomedical engineering online.
[31] Martin A. Nowak,et al. A spatial model predicts that dispersal and cell turnover limit intratumour heterogeneity , 2015, Nature.
[32] Chih-Ling Tsai,et al. Regression model selection—a residual likelihood approach , 2002 .
[33] Benjamin Gompertz,et al. XXIV. On the nature of the function expressive of the law of human mortality, and on a new mode of determining the value of life contingencies. In a letter to Francis Baily, Esq. F. R. S. &c , 1825, Philosophical Transactions of the Royal Society of London.
[34] S. Keller,et al. Nonlinear least-squares data fitting in Excel spreadsheets , 2010, Nature Protocols.
[35] M. Prieto,et al. Comparison of several mathematical models for describing the joint effect of temperature and ph on glucanex activity , 2012, Biotechnology progress.
[36] M. Prieto,et al. A Time-Dose Model to Quantify the Antioxidant Responses of the Oxidative Hemolysis Inhibition Assay (OxHLIA) and Its Extension to Evaluate Other Hemolytic Effectors , 2014, BioMed research international.
[37] Krister Wennerberg,et al. Quantitative scoring of differential drug sensitivity for individually optimized anticancer therapies , 2014, Scientific Reports.
[38] F. J. Richards. A Flexible Growth Function for Empirical Use , 1959 .
[39] Miguel Ángel Prieto Lage,et al. Dose-response analysis in the joint action of two effectors. A new approach to simulation, identification and modelling of some basic interactions. , 2013 .
[40] D. Banerjee,et al. Cytotoxicity and Cell Growth Assays , 2006 .
[41] Ana Maria Carvalho,et al. Bioactivity and chemical characterization in hydrophilic and lipophilic compounds of Chenopodium ambrosioides L , 2013 .
[42] R. Rust,et al. Model selection criteria: an investigation of relative accuracy, posterior probabilities, and combinations of criteria , 1995 .
[43] Dejian Huang,et al. The chemistry behind antioxidant capacity assays. , 2005, Journal of agricultural and food chemistry.
[44] E. Tjørve. Shapes and functions of species–area curves: a review of possible models , 2003 .
[45] Carlos F. Lopez,et al. An unbiased metric of antiproliferative drug effect in vitro , 2016, Nature Methods.
[46] W. Weibull. A Statistical Distribution Function of Wide Applicability , 1951 .
[47] R. C. Whiting,et al. When is simple good enough: a comparison of the Gompertz, Baranyi, and three-phase linear models for fitting bacterial growth curves , 1997 .
[48] M. Prieto,et al. Preparation of marine silage of swordfish, ray and shark visceral waste by lactic acid bacteria , 2011 .
[49] Omer Dushek,et al. Phenotypic models of T cell activation , 2014, Nature Reviews Immunology.
[50] Emmanuel Barillot,et al. Mathematical Modelling of Molecular Pathways Enabling Tumour Cell Invasion and Migration , 2015, PLoS Comput. Biol..
[51] R. Shoemaker. The NCI60 human tumour cell line anticancer drug screen , 2006, Nature Reviews Cancer.
[52] Kanyawim Kirtikara,et al. Sulforhodamine B colorimetric assay for cytotoxicity screening , 2006, Nature Protocols.
[53] J. Black,et al. Operational models of pharmacological agonism , 1983, Proceedings of the Royal Society of London. Series B. Biological Sciences.
[54] M. Prieto,et al. Oversimplification and Overstandardization in Biological Methods: Sperm Bioassays in Ecotoxicology as a Case of Study and a Proposal for Their Reformulation , 2014, TheScientificWorldJournal.
[55] M. Prieto,et al. NOEC and LOEC as merely concessive expedients: two unambiguous alternatives and some criteria to maximize the efficiency of dose-response experimental designs. , 2013, The Science of the total environment.
[56] P. Clemons,et al. Target identification and mechanism of action in chemical biology and drug discovery. , 2013, Nature chemical biology.
[57] P. Zage,et al. Measuring cytotoxicity: a new perspective on LC50. , 2007, Anticancer research.
[58] P. Campbell,et al. Enzyme changes in neonatal skeletal muscle: effect of thyroid deficiency. , 1978, The American journal of physiology.
[59] M. Maurin,et al. REVIEW ARTICLE doi: 10.1111/j.1472-8206.2008.00633.x The Hill equation: a review of its capabilities in pharmacological modelling , 2008 .
[60] M. Fréchet. Sur la loi de probabilité de l'écart maximum , 1928 .
[61] Joshua M. Stuart,et al. Subtype and pathway specific responses to anticancer compounds in breast cancer , 2011, Proceedings of the National Academy of Sciences.
[62] D. Rivers,et al. Model Selection Tests for Nonlinear Dynamic Models , 2002 .
[63] Britta Basse,et al. Modelling cell population growth with applications to cancer therapy in human tumour cell lines. , 2004, Progress in biophysics and molecular biology.
[64] I. Puri,et al. Mathematical model for chemotherapeutic drug efficacy in arresting tumour growth based on the cancer stem cell hypothesis , 2007, Cell proliferation.
[65] Mustafa Özilgen,et al. Kinetic Model of Lipid Oxidation in Foods , 1990 .
[66] Benjamin Haibe-Kains,et al. Inconsistency in large pharmacogenomic studies , 2013, Nature.
[67] Philip Hall,et al. Integrated Stochastic Model of DNA Damage Repair by Non-homologous End Joining and p53/p21- Mediated Early Senescence Signalling , 2015, PLoS Comput. Biol..
[68] Adam A. Margolin,et al. The Cancer Cell Line Encyclopedia enables predictive modeling of anticancer drug sensitivity , 2012, Nature.
[69] G. Peters,et al. Comparison of the sulforhodamine B protein and tetrazolium (MTT) assays for in vitro chemosensitivity testing. , 1991, European journal of cancer.
[70] Erik Sahai,et al. Differing modes of tumour cell invasion have distinct requirements for Rho/ROCK signalling and extracellular proteolysis , 2003, Nature Cell Biology.