A compendium of RNA-binding motifs for decoding gene regulation
暂无分享,去创建一个
Brendan J. Frey | Xiao Li | Hong Zheng | Weimin Li | Mihai Albu | Fabio Piano | Russ P. Carstens | Quaid Morris | Timothy R. Hughes | Richard A. Anderson | Matthew T. Weirauch | Benjamin J. Blencowe | Mei Qiao | Hilal Kazan | Sarah A. Smith | Manuel Irimia | Ally Yang | Debashish Ray | Kate B. Cook | Hamed S. Najafabadi | Serge Gueroussov | Hong Na | Leah H. Matzat | Ryan K. Dale | Sarah A. Smith | Christopher A. Yarosh | Seth M. Kelly | Behnam Nabet | Desirea Mecenas | Rakesh S. Laishram | Howard D. Lipshitz | Anita H. Corbett | Kristen W. Lynch | Luiz O. F. Penalva | Elissa P. Lei | Andrew G. Fraser | B. Frey | F. Piano | A. Fraser | Serge Gueroussov | H. Najafabadi | T. Hughes | Q. Morris | B. Blencowe | D. Ray | H. Kazan | R. Carstens | M. Weirauch | Ally Yang | L. Penalva | D. Mecenas | Xiao Li | H. Lipshitz | Hong Zheng | K. Lynch | M. Irimia | A. Corbett | Mihai Albu | M. Qiao | B. Nabet | Rakesh S. Laishram | Weimin Li | Hong Na | E. Lei | R. Anderson | Behnam Nabet | Q. Morris
[1] Norman E. Davey,et al. Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins , 2012, Cell.
[2] B. Morris,et al. RBM4: a multifunctional RNA-binding protein. , 2009, The international journal of biochemistry & cell biology.
[3] P. Tomançak,et al. Global Analysis of mRNA Localization Reveals a Prominent Role in Organizing Cellular Architecture and Function , 2007, Cell.
[4] G. Stormo,et al. Analysis of Homeodomain Specificities Allows the Family-wide Prediction of Preferred Recognition Sites , 2008, Cell.
[5] Neelroop Parikshak,et al. RBFOX1 regulates both splicing and transcriptional networks in human neuronal development. , 2012, Human molecular genetics.
[6] J. Steitz,et al. Identification of HuR as a protein implicated in AUUUA‐mediated mRNA decay , 1997, The EMBO journal.
[7] G. Rubin,et al. Global analyses of mRNA translational control during early Drosophila embryogenesis , 2007, Genome Biology.
[8] D. Higgins,et al. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega , 2011, Molecular systems biology.
[9] Daniel E. Newburger,et al. Variation in Homeodomain DNA Binding Revealed by High-Resolution Analysis of Sequence Preferences , 2008, Cell.
[10] Gene W. Yeo,et al. Genome-wide analysis of PTB-RNA interactions reveals a strategy used by the general splicing repressor to modulate exon inclusion or skipping. , 2009, Molecular cell.
[11] J. Graham,et al. Architecture and function , 1993 .
[12] Gabriele Varani,et al. Faculty Opinions recommendation of Systematic discovery of structural elements governing stability of mammalian messenger RNAs. , 2012 .
[13] C. Burd,et al. RNA binding specificity of hnRNP A1: significance of hnRNP A1 high‐affinity binding sites in pre‐mRNA splicing. , 1994, The EMBO journal.
[14] M. Bushell,et al. Polypyrimidine-tract-binding protein: a multifunctional RNA-binding protein. , 2008, Biochemical Society transactions.
[15] Timothy R Hughes,et al. SMAUG is a major regulator of maternal mRNA destabilization in Drosophila and its translation is activated by the PAN GU kinase. , 2007, Developmental cell.
[16] Gene W. Yeo,et al. Integrative genome‐wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins , 2012, Cell reports.
[17] R. Stefl,et al. RNA sequence‐ and shape‐dependent recognition by proteins in the ribonucleoprotein particle , 2005, EMBO reports.
[18] Chris Sander,et al. RNA targets of wild-type and mutant FET family proteins , 2011, Nature Structural &Molecular Biology.
[19] Benjamin J. Blencowe,et al. SnapShot: The Splicing Regulatory Machinery , 2008, Cell.
[20] Takayuki Morisaki,et al. RNA‐binding proteins Rbm38 and Rbm24 regulate myogenic differentiation via p21‐dependent and ‐independent regulatory pathways , 2009, Genes to cells : devoted to molecular & cellular mechanisms.
[21] D. Baillie,et al. The RNA-binding protein SUP-12 controls muscle-specific splicing of the ADF/cofilin pre-mRNA in C. elegans , 2004, The Journal of cell biology.
[22] Michael Q. Zhang,et al. Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2. , 2008, Genes & development.
[23] Steven E Brenner,et al. Genome-wide analysis of alternative pre-mRNA splicing and RNA-binding specificities of the Drosophila hnRNP A/B family members. , 2009, Molecular cell.
[24] Li Yang,et al. Conservation of an RNA regulatory map between Drosophila and mammals. , 2011, Genome research.
[25] Gary D. Stormo,et al. Context-dependent DNA recognition code for C2H2 zinc-finger transcription factors , 2008, Bioinform..
[26] J. V. Van Etten,et al. Human Pumilio Proteins Recruit Multiple Deadenylases to Efficiently Repress Messenger RNAs* , 2012, The Journal of Biological Chemistry.
[27] José M. Izquierdo. Exon Definition of Fas Apoptosis-promoting Receptor on Alternative Pre-mRNA Splicing Regulator , 2008 .
[28] Gene W. Yeo,et al. An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells , 2009, Nature Structural &Molecular Biology.
[29] Eric T. Wang,et al. Transcriptome-wide Regulation of Pre-mRNA Splicing and mRNA Localization by Muscleblind Proteins , 2012, Cell.
[30] S. Horvath,et al. Transcriptomic Analysis of Autistic Brain Reveals Convergent Molecular Pathology , 2011, Nature.
[31] Daniel Herschlag,et al. Diverse RNA-Binding Proteins Interact with Functionally Related Sets of RNAs, Suggesting an Extensive Regulatory System , 2008, PLoS biology.
[32] Panayiotis V. Benos,et al. STAMP: a web tool for exploring DNA-binding motif similarities , 2007, Nucleic Acids Res..
[33] Hans-Rudolf Hotz,et al. The Quaking family of RNA-binding proteins: Coordinators of the cell cycle and differentiation , 2010, Cell cycle.
[34] Gary D. Stormo,et al. Recognition models to predict DNA-binding specificities of homeodomain proteins , 2012, Bioinform..
[35] Lourdes Peña Castillo,et al. Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins , 2009, Nature Biotechnology.
[36] T. Glisovic,et al. RNA‐binding proteins and post‐transcriptional gene regulation , 2008, FEBS letters.
[37] Frédéric H.-T. Allain,et al. Sequence-specific binding of single-stranded RNA: is there a code for recognition? , 2006, Nucleic acids research.
[38] Brendan J. Frey,et al. Deciphering the splicing code , 2010, Nature.
[39] J. Keene. RNA regulons: coordination of post-transcriptional events , 2007, Nature Reviews Genetics.
[40] M. Berger,et al. Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors , 2009, Nature Protocols.
[41] L. Mirny,et al. Different gene regulation strategies revealed by analysis of binding motifs. , 2009, Trends in genetics : TIG.
[42] Tyson A. Clark,et al. HITS-CLIP yields genome-wide insights into brain alternative RNA processing , 2008, Nature.
[43] A. Frasch,et al. Gene expression regulation in trypanosomatids. , 2011, Essays in biochemistry.
[44] Quaid Morris,et al. Predicting in vivo binding sites of RNA-binding proteins using mRNA secondary structure. , 2010, RNA.
[45] N. Mukherjee,et al. Ribonomic Analysis of Human Pum1 Reveals cis-trans Conservation across Species despite Evolution of Diverse mRNA Target Sets , 2008, Molecular and Cellular Biology.
[46] Pablo Tamayo,et al. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[47] Alan M. Moses,et al. MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model , 2004, Genome Biology.