Empirical comparison of reduced representation bisulfite sequencing and Infinium BeadChip reproducibility and coverage of DNA methylation in humans
暂无分享,去创建一个
John N. Hutchinson | William P. Accomando | A. Just | P. Vokonas | J. Schwartz | A. Baccarelli | Xihong Lin | L. Pantano | S. Amr | A. Binder | K. Michels | B. Izzi | J. Carmona | Joel Schwartz
[1] Doron Betel,et al. Enhanced Reduced Representation Bisulfite Sequencing for Assessment of DNA Methylation at Base Pair Resolution , 2015, Journal of visualized experiments : JoVE.
[2] Michael Q. Zhang,et al. Integrative analysis of 111 reference human epigenomes , 2015, Nature.
[3] Martin J. Aryee,et al. Coverage recommendations for methylation analysis by whole genome bisulfite sequencing , 2014, Nature Methods.
[4] J. Greally,et al. Genome-wide assays that identify and quantify modified cytosines in human disease studies , 2015, Epigenetics & Chromatin.
[5] Thomas Lengauer,et al. Comprehensive Analysis of DNA Methylation Data with RnBeads , 2014, Nature Methods.
[6] Rafael A. Irizarry,et al. Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays , 2014, Bioinform..
[7] Shyamal D Peddada,et al. A systematic assessment of normalization approaches for the Infinium 450K methylation platform , 2014, Epigenetics.
[8] Gianluca Bontempi,et al. A comprehensive overview of Infinium HumanMethylation450 data processing , 2013, Briefings Bioinform..
[9] John K Wiencke,et al. Quantitative reconstruction of leukocyte subsets using DNA methylation , 2013, Genome Biology.
[10] R. Irizarry,et al. Accounting for cellular heterogeneity is critical in epigenome-wide association studies , 2014, Genome Biology.
[11] F. Tang,et al. Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing , 2013, Genome research.
[12] Ruth Pidsley,et al. A data-driven approach to preprocessing Illumina 450K methylation array data , 2013, BMC Genomics.
[13] Kyung Park,et al. Epigenomic alterations in localized and advanced prostate cancer. , 2013, Neoplasia.
[14] Pau Farré,et al. Additional annotation enhances potential for biologically-relevant analysis of the Illumina Infinium HumanMethylation450 BeadChip array , 2013, Epigenetics & Chromatin.
[15] Zachary D. Smith,et al. Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling , 2012, Genome Biology.
[16] M. Esteller,et al. DNA methylation profiling in the clinic: applications and challenges , 2012, Nature Reviews Genetics.
[17] J. Kere,et al. Differential DNA Methylation in Purified Human Blood Cells: Implications for Cell Lineage and Studies on Disease Susceptibility , 2012, PloS one.
[18] M. Ratajczak. Igf2-H19, an imprinted tandem gene, is an important regulator of embryonic development, a guardian of proliferation of adult pluripotent stem cells, a regulator of longevity, and a 'passkey' to cancerogenesis. , 2012, Folia histochemica et cytobiologica.
[19] Devin C. Koestler,et al. DNA methylation arrays as surrogate measures of cell mixture distribution , 2012, BMC Bioinformatics.
[20] Wei Zhang,et al. On the Analysis of the Illumina 450k Array Data: Probes Ambiguously Mapped to the Human Genome , 2012, Front. Gene..
[21] C. Sotiriou,et al. Evaluation of the Infinium Methylation 450K technology. , 2011, Epigenomics.
[22] K. Gunderson,et al. High density DNA methylation array with single CpG site resolution. , 2011, Genomics.
[23] E. Coto,et al. Genotype of an individual single nucleotide polymorphism regulates DNA methylation at the TRPC3 alternative promoter , 2011, Epigenetics.
[24] Kevin M. Bowling,et al. Analysis of DNA Methylation in a Three-Generation Family Reveals Widespread Genetic Influence on Epigenetic Regulation , 2011, PLoS genetics.
[25] A. Feinberg,et al. Increased methylation variation in epigenetic domains across cancer types , 2011, Nature Genetics.
[26] M. Esteller,et al. Validation of a DNA methylation microarray for 450,000 CpG sites in the human genome , 2011, Epigenetics.
[27] S. K. Zaidi,et al. Bookmarking the Genome: Maintenance of Epigenetic Information* , 2011, The Journal of Biological Chemistry.
[28] Zachary D. Smith,et al. Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling , 2011, Nature Protocols.
[29] J. Rinn,et al. DNA methylation and epigenetic control of cellular differentiation , 2010, Cell cycle.
[30] Michael Q. Zhang,et al. Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications , 2010, Nature Biotechnology.
[31] Irving L. Weissman,et al. A comprehensive methylome map of lineage commitment from hematopoietic progenitors , 2010, Nature.
[32] Martin J Aryee,et al. Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts , 2009, Nature Genetics.
[33] K. Gunderson,et al. Genome-wide DNA methylation profiling using Infinium® assay. , 2009, Epigenomics.
[34] Wei Li,et al. BSMAP: whole genome bisulfite sequence MAPping program , 2009, BMC Bioinformatics.
[35] A. Shilatifard,et al. An operational definition of epigenetics. , 2009, Genes & development.
[36] A. Feinberg,et al. Genome-wide methylation analysis of human colon cancer reveals similar hypo- and hypermethylation at conserved tissue-specific CpG island shores , 2008, Nature Genetics.
[37] Huidong Shi,et al. CpG islands: their potential as biomarkers for cancer , 2007, Expert review of molecular diagnostics.
[38] M. Negrini,et al. Mechanisms causing imprinting defects in familial Beckwith-Wiedemann syndrome with Wilms' tumour. , 2007, Human molecular genetics.
[39] Wei Jiang,et al. High-throughput DNA methylation profiling using universal bead arrays. , 2006, Genome research.
[40] H. Cedar,et al. Silence of the genes — mechanisms of long-term repression , 2005, Nature Reviews Genetics.
[41] T. Richmond,et al. The structure of DNA in the nucleosome core , 2003, Nature.
[42] A. Veronese,et al. Loss of methylation at chromosome 11p15.5 is common in human adult tumors. , 2002 .
[43] A. Bird. DNA methylation patterns and epigenetic memory. , 2002, Genes & development.