Laboratory diagnosis of nontuberculous mycobacteria.

[1]  M. Salfinger,et al.  Lessons from a proficiency testing event for acid-fast microscopy. , 2001, Chest.

[2]  J. Wolfe,et al.  Necessity of Quality-Controlled 16S rRNA Gene Sequence Databases: Identifying Nontuberculous MycobacteriumSpecies , 2001, Journal of Clinical Microbiology.

[3]  E. Böttger,et al.  Phylogeny of the Mycobacterium chelonae-like organism based on partial sequencing of the 16S rRNA gene and proposal of Mycobacterium mucogenicum sp. nov. , 1995, International journal of systematic bacteriology.

[4]  Benjamin A Lipsky,et al.  Factors affecting the clinical value of microscopy for acid-fast bacilli. , 1984, Reviews of infectious diseases.

[5]  R. Wallace,,et al.  Randomly amplified polymorphic DNA PCR for comparison of Mycobacterium abscessus strains from nosocomial outbreaks , 1997, Journal of clinical microbiology.

[6]  M. Picardeau,et al.  Genotypic characterization of five subspecies of Mycobacterium kansasii , 1997, Journal of clinical microbiology.

[7]  K. Carroll,et al.  Identification of Mycobacterium spp. by Using a Commercial 16S Ribosomal DNA Sequencing Kit and Additional Sequencing Libraries , 2002, Journal of Clinical Microbiology.

[8]  M. Salfinger,et al.  False-positive results for Mycobacterium celatum with the AccuProbe Mycobacterium tuberculosis complex assay. , 2000, Journal of clinical microbiology.

[9]  Poonpilas Hongmanee,et al.  Fluorescence In Situ Hybridization Assay Using Peptide Nucleic Acid Probes for Differentiation between Tuberculous and Nontuberculous Mycobacterium Species in Smears of Mycobacterium Cultures , 1999, Journal of Clinical Microbiology.

[10]  Xiaotian Zheng,et al.  Rapid Detection of Mycobacterium tuberculosis in Contaminated BACTEC 12B Broth Cultures by Testing with Amplified Mycobacterium Tuberculosis Direct Test , 2001, Journal of Clinical Microbiology.

[11]  A. Somoskövi,et al.  Comparison of the Mycobacteria Growth Indicator Tube with MB Redox, Löwenstein-Jensen, and Middlebrook 7H11 Media for Recovery of Mycobacteria in Clinical Specimens , 1999, Journal of Clinical Microbiology.

[12]  G. Woods,et al.  Mycobacterial testing in clinical laboratories that participate in the College of American Pathologists Mycobacteriology Surveys. Changes in practices based on responses to 1992, 1993, and 1995 questionnaires. , 1996, Archives of pathology & laboratory medicine.

[13]  J. Kellogg,et al.  Application of the Sherlock Mycobacteria Identification System Using High-Performance Liquid Chromatography in a Clinical Laboratory , 2001, Journal of Clinical Microbiology.

[14]  M. Yakrus,et al.  Cross-reactivity of genetic probe for detection of Mycobacterium tuberculosis with newly described species Mycobacterium celatum , 1994, Journal of clinical microbiology.

[15]  E. Russi,et al.  Mycobacterium heidelbergense species nov. infection mimicking a lung tumor. , 1998, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[16]  Pascale Funke-Kissling,et al.  Performance Characteristics of the BDProbeTec System for Direct Detection of Mycobacterium tuberculosis Complex in Respiratory Specimens , 1999, Journal of Clinical Microbiology.

[17]  I. Bastian,et al.  Phenotypic and molecular characterization of three clinical isolates of Mycobacterium interjectum , 1997, Journal of clinical microbiology.

[18]  R. Skuce,et al.  Identification of mycobacteria from animals by restriction enzyme analysis and direct DNA cycle sequencing of polymerase chain reaction-amplified 16S rRNA gene sequences , 1993, Journal of clinical microbiology.

[19]  Nalin Rastogi,et al.  Burden of Unidentifiable Mycobacteria in a Reference Laboratory , 2001, Journal of Clinical Microbiology.

[20]  S. Niemann,et al.  Identification of Mycobacterium kansasii by using a DNA probe (AccuProbe) and molecular techniques. , 1999, Journal of clinical microbiology.

[21]  D. van Soolingen,et al.  Use of IS901 and IS1245 in RFLP typing of Mycobacterium avium complex: relatedness among serovar reference strains, human and animal isolates. , 1998, The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.

[22]  Linda S. Guthertz,et al.  Mycolic Acid Analysis by High-Performance Liquid Chromatography for Identification of Mycobacterium Species , 2001, Clinical Microbiology Reviews.

[23]  M. Gismondo,et al.  Multicenter Comparison of ESP Culture System II with BACTEC 460TB and with Lowenstein-Jensen Medium for Recovery of Mycobacteria from Different Clinical Specimens, Including Blood , 1998, Journal of Clinical Microbiology.

[24]  Rapid diagnostic tests for tuberculosis: what is the appropriate use? American Thoracic Society Workshop. , 1997, American journal of respiratory and critical care medicine.

[25]  B. Gicquel,et al.  Mycobacterium xenopi IS1395, a novel insertion sequence expanding the IS256 family. , 1996, Microbiology.

[26]  J. Musser,et al.  Sequence-Based Identification ofMycobacterium Species Using the MicroSeq 500 16S rDNA Bacterial Identification System , 2000, Journal of Clinical Microbiology.

[27]  M. Picardeau,et al.  Comparison of a new insertion element, IS1407, with established molecular markers for the characterization of Mycobacterium celatum. , 1997, International journal of systematic bacteriology.

[28]  L. Rigouts,et al.  Rapid Identification of Mycobacteria to the Species Level Using INNO-LiPA Mycobacteria, a Reverse Hybridization Assay , 2001, Journal of Clinical Microbiology.

[29]  M. Denniston,et al.  Contrast of survey results between state and a cohort of nonstate mycobacteriology laboratories: changes in laboratory practices , 1997, Journal of clinical microbiology.

[30]  J. Myers,et al.  Histologic parameters predictive of mycobacterial infection. , 1998, American journal of clinical pathology.

[31]  R. Kroppenstedt,et al.  Mycobacterium intermedium sp. nov. , 1993, International journal of systematic bacteriology.

[32]  A. Somoskövi,et al.  Application of a computer-directed automated microscope in mycobacteriology. , 1999, The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.

[33]  A. Troesch,et al.  Mycobacterium Species Identification and Rifampin Resistance Testing with High-Density DNA Probe Arrays , 1999, Journal of Clinical Microbiology.

[34]  W. Fry,et al.  Amplification of residual DNA sequences in sterile bronchoscopes leading to false-positive PCR results , 1996, Journal of clinical microbiology.

[35]  Sosnovskaia Av Identification of Mycobacterium and Mycobacterium tuberculosis , 1991 .

[36]  S. Rüsch-Gerdes,et al.  Rapid detection of mycobacteria in clinical specimens by using the automated BACTEC 9000 MB system and comparison with radiometric and solid-culture systems , 1997, Journal of clinical microbiology.

[37]  R. Mäntyjärvi,et al.  Random amplified polymorphic DNA genotyping of Mycobacterium malmoense , 1994, Journal of clinical microbiology.

[38]  K. Jost,et al.  Identification of Mycobacterium tuberculosis and M. avium complex directly from smear-positive sputum specimens and BACTEC 12B cultures by high-performance liquid chromatography with fluorescence detection and computer-driven pattern recognition models , 1995, Journal of clinical microbiology.

[39]  G. Pfyffer,et al.  Laboratory diagnosis of mycobacterial infections: new tools and lessons learned. , 2001, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[40]  K. Feldmann,et al.  Multicenter Evaluation of a PathogenicMycobacterium Screening Probe , 2001, Journal of Clinical Microbiology.

[41]  Yoon-Hoh Kook,et al.  Identification of Mycobacterial Species by Comparative Sequence Analysis of the RNA Polymerase Gene (rpoB) , 1999, Journal of Clinical Microbiology.

[42]  Henry D. Isenberg,et al.  Clinical Microbiology Procedures Handbook , 2004 .

[43]  S. McAllister,et al.  Evaluation of Modified BACTEC 12B Radiometric Medium and Solid Media for Culture of Mycobacterium aviumsubsp. paratuberculosis from Sheep , 1999, Journal of Clinical Microbiology.

[44]  W. Ludwig,et al.  Differentiation of Phylogenetically Related Slowly Growing Mycobacteria Based on 16S-23S rRNA Gene Internal Transcribed Spacer Sequences , 1998, Journal of Clinical Microbiology.

[45]  Q. Gao,et al.  Microarray analysis of pathogens and their interaction with hosts , 2001, Cellular microbiology.

[46]  H. Kasai,et al.  Differentiation of Phylogenetically Related Slowly Growing Mycobacteria by Their gyrB Sequences , 2000, Journal of Clinical Microbiology.

[47]  R. Wallace,,et al.  Sensitivity of Fluorochrome Microscopy for Detection of Mycobacterium tuberculosis versus Nontuberculous Mycobacteria , 1998, Journal of Clinical Microbiology.

[48]  Lloyd N. Friedman,et al.  Diagnostic standards and classification of tuberculosis. , 1991, The American review of respiratory disease.

[49]  A. Rieger,et al.  Genus Level Identification of Mycobacteria from Clinical Specimens by Using an Easy-To-Handle Mycobacterium-Specific PCR Assay , 1998, Journal of Clinical Microbiology.

[50]  S. Ichiyama,et al.  Diagnostic value of the strand displacement amplification method compared to those of Roche Amplicor PCR and culture for detecting mycobacteria in sputum samples , 1997, Journal of clinical microbiology.

[51]  Nalin Rastogi,et al.  Computer-assisted analysis of Mycobacterium avium fingerprints using insertion elements IS1245 and IS1311 in a Caribbean setting. , 1997, Research in microbiology.

[52]  Nalin Rastogi,et al.  IS1245 Restriction Fragment Length Polymorphism Typing of Mycobacterium avium Isolates: Proposal for Standardization , 1998, Journal of Clinical Microbiology.

[53]  E. Tortoli,et al.  Identification of 54 Mycobacterial Species by PCR-Restriction Fragment Length Polymorphism Analysis of the hsp65Gene , 2001, Journal of Clinical Microbiology.

[54]  H. Gruft Evaluation of mycobacteriology laboratories: the acid-fast smear. , 1978, Health laboratory science.

[55]  R. Wallace,,et al.  Diagnosis and treatment of disease caused by nontuberculous mycobacteria. , 1990, The American review of respiratory disease.

[56]  T. Kiehn,et al.  Pulmonary nodule due to Mycobacterium haemophilum in an immunocompetent host. , 1999, American journal of respiratory and critical care medicine.

[57]  G. Fadda,et al.  Fatal Pulmonary Infection Due to Multidrug-Resistant Mycobacterium abscessus in a Patient with Cystic Fibrosis , 2001, Journal of Clinical Microbiology.

[58]  M. A. Martin,et al.  APIC guidelines for infection prevention and control in flexible endoscopy. Association for Professionals in Infection Control and Epidemiology, Inc. 1991, 1992, and 1993 APIC Guidelines Committee. , 1994, American journal of infection control.

[59]  O. Rasmussen,et al.  Evaluation of a Fluorescence In Situ Hybridization Assay for Differentiation between Tuberculous and NontuberculousMycobacterium Species in Smears of Lowenstein-Jensen and Mycobacteria Growth Indicator Tube Cultures Using Peptide Nucleic Acid Probes , 2001, Journal of Clinical Microbiology.

[60]  M. Salfinger,et al.  False-Positive Results for Mycobacterium celatum with the AccuProbe Mycobacterium tuberculosisComplex Assay , 2000, Journal of Clinical Microbiology.

[61]  E. Böttger,et al.  Genotypic identification of mycobacteria by nucleic acid sequence determination: report of a 2-year experience in a clinical laboratory , 1993, Journal of clinical microbiology.

[62]  R. Arbeit,et al.  Persistent colonisation of potable water as a source of Mycobacterium avium infection in AIDS , 1994, The Lancet.

[63]  C. Woodley,et al.  Differentiation of slowly growing Mycobacterium species, including Mycobacterium tuberculosis, by gene amplification and restriction fragment length polymorphism analysis , 1992, Journal of clinical microbiology.

[64]  A. Telenti,et al.  A novel insertion element from Mycobacterium avium, IS1245, is a specific target for analysis of strain relatedness , 1995, Journal of clinical microbiology.

[65]  D. Hardy,et al.  Selective utilization of DNA probes for identification of Mycobacterium species on the basis of cord formation in primary BACTEC 12B cultures , 1995, Journal of clinical microbiology.

[66]  K. Waites,et al.  Comparison of the MB/BacT System with a Revised Antibiotic Supplement Kit to the BACTEC 460 System for Detection of Mycobacteria in Clinical Specimens , 1998, Journal of Clinical Microbiology.

[67]  E. Palenque,et al.  Use of restriction fragment length polymorphism as a genetic marker for typing Mycobacterium avium strains , 1995, Journal of clinical microbiology.

[68]  K Okuzumi,et al.  Nucleotide sequence comparison of the mycobacterial dnaJ gene and PCR-restriction fragment length polymorphism analysis for identification of mycobacterial species. , 1994, International journal of systematic bacteriology.

[69]  M. Yakrus,et al.  Nontuberculous mycobacterial disease following hot tub exposure. , 2001, Emerging infectious diseases.

[70]  D. Glenn,et al.  Comparison of a radiometric method (BACTEC) and conventional culture media for recovery of mycobacteria from smear-negative specimens , 1983, Journal of clinical microbiology.

[71]  T. Cleary,et al.  Evaluation of the LiPA MYCOBACTERIA Assay for Identification of Mycobacterial Species from BACTEC 12B Bottles , 2000, Journal of Clinical Microbiology.

[72]  M. Salfinger,et al.  Access to newer laboratory procedures: a call for action. , 2000, The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.

[73]  A. Berno,et al.  Simultaneous genotyping and species identification using hybridization pattern recognition analysis of generic Mycobacterium DNA arrays. , 1998, Genome research.

[74]  D. van Soolingen,et al.  Molecular epidemiology of tuberculosis and other mycobacterial infections: main methodologies and achievements , 2001, Journal of internal medicine.

[75]  P. Gilligan,et al.  Proficiency testing of clinical microbiology laboratories using modified decontamination procedures for detection of nontuberculous mycobacteria in sputum samples from cystic fibrosis patients. The Nontuberculous Mycobacteria in Cystic Fibrosis Study Group , 1997, Journal of Clinical Microbiology.

[76]  P. Cichero,et al.  Performance Assessment of New Multiplex Probe Assay for Identification of Mycobacteria , 2001, Journal of Clinical Microbiology.

[77]  F. Portaels,et al.  Growth of mycobacteria in relation to the pH of the medium. , 1982, Annales de microbiologie.

[78]  Frank,et al.  Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis , 1993, Journal of clinical microbiology.

[79]  Nalin Rastogi,et al.  Rapid identification of mycobacteria to species level by PCR-restriction fragment length polymorphism analysis of the hsp65 gene and proposition of an algorithm to differentiate 34 mycobacterial species , 1997, Journal of clinical microbiology.

[80]  K. Feldmann,et al.  Diagnosis of mycobacterial infections by nucleic acid amplification: 18-month prospective study , 1996, Journal of clinical microbiology.

[81]  M. Morgan,et al.  Multicenter Evaluation of the BACTEC MGIT 960 System for Recovery of Mycobacteria , 1999, Journal of Clinical Microbiology.

[82]  E. Böttger,et al.  Identification of mycobacteria by PCR-based sequence determination of the 32-kilodalton protein gene , 1994, Journal of clinical microbiology.

[83]  M. Picardeau,et al.  Typing of Mycobacterium avium isolates by PCR , 1996, Journal of clinical microbiology.

[84]  J. Kilburn,et al.  Identification of mycobacteria by high-performance liquid chromatography , 1991, Journal of clinical microbiology.

[85]  S. Rüsch-Gerdes,et al.  Mycobacterium conspicuum sp. nov., a new species isolated from patients with disseminated infections , 1995, Journal of clinical microbiology.

[86]  C. W. Moss,et al.  Mycobacterium celatum sp. nov. , 1993, International journal of systematic bacteriology.

[87]  L. Paulin,et al.  Pulmonary Infection Caused by an Unusual, Slowly Growing Nontuberculous Mycobacterium , 2001, Journal of Clinical Microbiology.

[88]  P. Berche,et al.  hsp65 Sequencing for Identification of Rapidly Growing Mycobacteria , 1999, Journal of Clinical Microbiology.

[89]  S. Ostroff,et al.  A Nosocomial Pseudo-Outbreak of Mycobacterium xenopi Due to a Contaminated Potable Water Supply: Lessons in Prevention , 1993, Infection Control & Hospital Epidemiology.

[90]  E. Tortoli,et al.  Evaluation of reformulated chemiluminescent DNA probe (AccuProbe) for culture identification of Mycobacterium kansasii , 1996, Journal of clinical microbiology.

[91]  R. Wallace,,et al.  Mycobacterium immunogenum sp. nov., a novel species related to Mycobacterium abscessus and associated with clinical disease, pseudo-outbreaks and contaminated metalworking fluids: an international cooperative study on mycobacterial taxonomy. , 2001, International journal of systematic and evolutionary microbiology.

[92]  J. Lundgren,et al.  Disseminated Infection with Mycobacterium genavense: a Challenge to Physicians and Mycobacteriologists , 1999, Journal of Clinical Microbiology.

[93]  E. Peterson,et al.  Comparison of direct and concentrated acid-fast smears to identify specimens culture positive for Mycobacterium spp. , 1999, Journal of clinical microbiology.

[94]  D. Honeybourne,et al.  An audit of bronchoscopy practice in the United Kingdom: a survey of adherence to national guidelines. , 1997, Thorax.

[95]  E. Stackebrandt,et al.  Mycobacterium hodleri sp. nov., a new member of the fast-growing mycobacteria capable of degrading polycyclic aromatic hydrocarbons. , 1996, International journal of systematic bacteriology.

[96]  S. Fontecchio,et al.  Long-term laboratory contamination by Mycobacterium abscessus resulting in two pseudo-outbreaks: recognition with use of random amplified polymorphic DNA (RAPD) polymerase chain reaction. , 1998, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[97]  G. Harding,et al.  Mycobacterium branderi from Both a Hand Infection and a Case of Pulmonary Disease , 2000, Journal of Clinical Microbiology.

[98]  E. Böttger,et al.  Species identification of mycobacteria using rDNA sequencing. , 1998, Methods in molecular biology.

[99]  J. T. Crawford,et al.  The resurgence of tuberculosis: is your laboratory ready? , 1993, Journal of clinical microbiology.

[100]  T. B. Taylor,et al.  Routine use of PCR-restriction fragment length polymorphism analysis for identification of mycobacteria growing in liquid media , 1997, Journal of clinical microbiology.

[101]  H. Stender,et al.  Direct detection and identification of Mycobacterium tuberculosis in smear-positive sputum samples by fluorescence in situ hybridization (FISH) using peptide nucleic acid (PNA) probes. , 1999, The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.

[102]  J. Pellegrin,et al.  Disseminated Mycobacterium lentiflavumInfection in a Human Immunodeficiency Virus-Infected Patient , 2001, Journal of Clinical Microbiology.

[103]  Ellen Jo Baron,et al.  Manual of clinical microbiology , 1975 .

[104]  G. Bai,et al.  Differentiation of Mycobacterial Species by PCR-Restriction Analysis of DNA (342 Base Pairs) of the RNA Polymerase Gene (rpoB) , 2001, Journal of Clinical Microbiology.

[105]  R. Loddenkemper,et al.  Mycobacterium heckeshornense sp. nov., a New Pathogenic Slowly Growing Mycobacterium sp. Causing Cavitary Lung Disease in an Immunocompetent Patient , 2000, Journal of Clinical Microbiology.

[106]  R. Kroppenstedt,et al.  Novel Diagnostic Algorithm for Identification of Mycobacteria Using Genus-Specific Amplification of the 16S-23S rRNA Gene Spacer and Restriction Endonucleases , 2000, Journal of Clinical Microbiology.