Particle Mobility Analysis Using Deep Learning and the Moment Scaling Spectrum
暂无分享,去创建一个
Erik Meijering | Maarten W. Paul | Ihor Smal | Marloes Arts | Claire Wyman | E. Meijering | C. Wyman | M. Paul | Marloes Arts | Ihor Smal
[1] Raibatak Das,et al. A Hidden Markov Model for Single Particle Tracks Quantifies Dynamic Interactions between LFA-1 and the Actin Cytoskeleton , 2009, PLoS Comput. Biol..
[2] Wilfried Brauer,et al. Classification of trajectories - Extracting invariants with a neural network , 1993, Neural Networks.
[3] Michael J Saxton,et al. Single-particle tracking: connecting the dots , 2008, Nature Methods.
[4] Stephan Uphoff,et al. Single-molecule imaging of UvrA and UvrB recruitment to DNA lesions in living Escherichia coli , 2016, Nature Communications.
[5] Charles Kervrann,et al. A quantitative approach for analyzing the spatio-temporal distribution of 3D intracellular events in fluorescence microscopy , 2018, eLife.
[6] William R. Young,et al. Strongly and weakly self-similar diffusion , 2001 .
[7] W. V. van Cappellen,et al. Dynamics of relative chromosome position during the cell cycle. , 2004, Molecular biology of the cell.
[8] Jimmy Ba,et al. Adam: A Method for Stochastic Optimization , 2014, ICLR.
[9] L. Gmachowski,et al. Fractal model of anomalous diffusion , 2015, European Biophysics Journal.
[10] M. Garcia-Parajo,et al. A review of progress in single particle tracking: from methods to biophysical insights , 2015, Reports on progress in physics. Physical Society.
[11] X. Zhuang,et al. Virus trafficking – learning from single-virus tracking , 2007, Nature Reviews Microbiology.
[12] D. W. Scott,et al. Multivariate Density Estimation, Theory, Practice and Visualization , 1992 .
[13] D A Weitz,et al. Investigating the microenvironments of inhomogeneous soft materials with multiple particle tracking. , 2001, Physical review. E, Statistical, nonlinear, and soft matter physics.
[14] Petros Koumoutsakos,et al. A novel supervised trajectory segmentation algorithm identifies distinct types of human adenovirus motion in host cells. , 2007, Journal of structural biology.
[15] R. Kanaar,et al. Inactivation of Pol θ and C-NHEJ eliminates off-target integration of exogenous DNA , 2017, Nature Communications.
[16] H. Qian,et al. Single particle tracking. Analysis of diffusion and flow in two-dimensional systems. , 1991, Biophysical journal.
[17] Michael A. Teitell,et al. Simulations of complex particle transport in heterogeneous active liquids , 2007 .
[18] A. Zeng,et al. Genomics and Systems Biology of Mammalian Cell Culture , 2012 .
[19] Khuloud Jaqaman,et al. Multistep Track Segmentation and Motion Classification for Transient Mobility Analysis. , 2018, Biophysical journal.
[20] S. Powell,et al. BRCA1 and BRCA2: different roles in a common pathway of genome protection , 2011, Nature Reviews Cancer.
[21] Petros Koumoutsakos,et al. Single-particle tracking of murine polyoma virus-like particles on live cells and artificial membranes. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[22] W. Holloman,et al. Unraveling the mechanism of BRCA2 in homologous recombination , 2011, Nature Structural &Molecular Biology.
[23] Hiroshi Kimura,et al. Kinetics of Core Histones in Living Human Cells , 2001, The Journal of cell biology.
[24] Susan M. Gasser,et al. Chromatin Movement in the Maintenance of Genome Stability , 2013, Cell.
[25] An-Ping Zeng,et al. Modeling of intracellular transport and compartmentation. , 2012, Advances in biochemical engineering/biotechnology.
[26] Michael Manhart,et al. Path statistics, memory, and coarse-graining of continuous-time random walks on networks. , 2015, The Journal of chemical physics.
[27] Arkajit Dey,et al. Inferring transient particle transport dynamics in live cells , 2015, Nature Methods.
[28] Shawn M. Gomez,et al. High-Resolution Quantification of Focal Adhesion Spatiotemporal Dynamics in Living Cells , 2011, PloS one.
[29] Lawrence R. Rabiner,et al. A tutorial on hidden Markov models and selected applications in speech recognition , 1989, Proc. IEEE.
[30] Y. Yao,et al. On Early Stopping in Gradient Descent Learning , 2007 .
[31] P. Koumoutsakos,et al. Feature point tracking and trajectory analysis for video imaging in cell biology. , 2005, Journal of structural biology.
[32] Michael D. Abràmoff,et al. Image processing with ImageJ , 2004 .
[33] D A Weitz,et al. Colloid surface chemistry critically affects multiple particle tracking measurements of biomaterials. , 2004, Biophysical journal.
[34] Jens Feder. Random Walks and Fractals , 1988 .
[35] Anna Akhmanova,et al. Tracking the ends: a dynamic protein network controls the fate of microtubule tips , 2008, Nature Reviews Molecular Cell Biology.
[36] Daphne Weihs,et al. Particle tracking in living cells: a review of the mean square displacement method and beyond , 2013, Rheologica Acta.
[37] N Hoze,et al. Analysis and Interpretation of Superresolution Single-Particle Trajectories. , 2015, Biophysical Journal.
[38] Maxime Woringer,et al. Robust model-based analysis of single-particle tracking experiments with Spot-On , 2018, eLife.
[39] Ivo F. Sbalzarini,et al. Thermophoretic motion of water nanodroplets confined inside carbon nanotubes. , 2009, Nano letters.
[40] Kuldip K. Paliwal,et al. Bidirectional recurrent neural networks , 1997, IEEE Trans. Signal Process..
[41] Wolf-Dietrich Heyer,et al. Human BRCA2 protein promotes RAD51 filament formation on RPA-covered ssDNA , 2010, Nature Structural &Molecular Biology.
[42] Yoshua Bengio,et al. Empirical Evaluation of Gated Recurrent Neural Networks on Sequence Modeling , 2014, ArXiv.
[43] Gaudenz Danuser,et al. Computational processing and analysis of dynamic fluorescence image data. , 2008, Methods in cell biology.
[44] A. Sergé,et al. Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes , 2008, Nature Methods.
[45] G E Tomlinson,et al. BRCA2 is required for ionizing radiation-induced assembly of Rad51 complex in vivo. , 1999, Cancer research.
[46] Jürgen Schmidhuber,et al. Long Short-Term Memory , 1997, Neural Computation.
[47] J. J. Macklin,et al. A general method to improve fluorophores for live-cell and single-molecule microscopy , 2014, Nature Methods.
[48] Erik Meijering,et al. Methods for cell and particle tracking. , 2012, Methods in enzymology.
[49] Itai Cohen,et al. Image-based algorithm for analysis of transient trapping in single-particle trajectories , 2012 .
[50] J. Elf,et al. Extracting intracellular diffusive states and transition rates from single-molecule tracking data , 2013, Nature Methods.
[51] R. Kanaar,et al. Single-Molecule Dynamics and Localization of DNA Repair Proteins in Cells. , 2018, Methods in enzymology.
[52] Denis Wirtz,et al. Particle Tracking Microrheology of Complex Fluids , 1997 .
[53] William J. Godinez,et al. Objective comparison of particle tracking methods , 2014, Nature Methods.
[54] Yoshua Bengio,et al. Learning long-term dependencies with gradient descent is difficult , 1994, IEEE Trans. Neural Networks.
[55] E. Furst,et al. Particle tracking microrheology of protein solutions , 2016 .
[56] Anders S. Hansen,et al. CTCF and Cohesin Regulate Chromatin Loop Stability with Distinct Dynamics , 2016 .
[57] Dipanjan Bhattacharya,et al. Dynamic organization of chromatin assembly and transcription factories in living cells. , 2010, Methods in cell biology.
[58] M. Dahan,et al. Single-molecule tracking in live cells reveals distinct target-search strategies of transcription factors in the nucleus , 2014, eLife.
[59] X. Michalet. Mean square displacement analysis of single-particle trajectories with localization error: Brownian motion in an isotropic medium. , 2010 .
[60] Ulrich Kubitscheck,et al. Trajectories and single-particle tracking data of intracellular vesicles loaded with either SNAP-Crb3A or SNAP-Crb3B , 2016, Data in brief.
[61] H. Kestler,et al. Significantly improved precision of cell migration analysis in time-lapse video microscopy through use of a fully automated tracking system , 2010, BMC Cell Biology.
[62] Alex Bateman,et al. An introduction to hidden Markov models. , 2007, Current protocols in bioinformatics.
[63] K. Jacobson,et al. Single-particle tracking: applications to membrane dynamics. , 1997, Annual review of biophysics and biomolecular structure.