Lab on a Chip Miniaturisation for chemistry , physics , biology , materials science and bioengineering

Many pharmaceuticals are proteins or their development is based on proteins. Cell-free protein synthesis (CFPS) is an innovative alternative to conventional cell based systems which enables the production of proteins with complex and even new characteristics. However, the short lifetime, low protein production and expensive reagent costs are still limitations of CFPS. Novel automated microfluidic systems might allow continuous, controllable and resource conserving CFPS. The presented microfluidic TRITT platform (TRITT for Transcription - RNA Immobilization & Transfer - Translation) addresses the individual biochemical requirements of the transcription and the translation step of CFPS in separate compartments, and combines the reaction steps by quasi-continuous transfer of RNA templates to enable automated CFPS. In detail, specific RNA templates with 5' and 3' hairpin structures for stabilization against nucleases were immobilized during in vitro transcription by newly designed and optimized hybridization oligonucleotides coupled to magnetizable particles. Transcription compatibility and reusability for immobilization of these functionalized particles was successfully proven. mRNA transfer was realized on-chip by magnetic actuated particle transfer, RNA elution and fluid flow to the in vitro translation compartment. The applicability of the microfluidic TRITT platform for the production of the cytotoxic protein Pierisin with simultaneous incorporation of a non-canonical amino acid for fluorescence labeling was demonstrated. The new reaction mode (TRITT mode) is a modified linked mode that fulfills the precondition for an automated modular reactor system. By continual transfer of new mRNA, the novel procedure overcomes problems caused by nuclease digestion and hydrolysis of mRNA during TL in standard CFPS reactions.

[1]  S. Kubick,et al.  A Continuous-Exchange Cell-Free Protein Synthesis System Based on Extracts from Cultured Insect Cells , 2014, PloS one.

[2]  Charles R. Cantor,et al.  Interaction of Biotin with Streptavidin , 1997, The Journal of Biological Chemistry.

[3]  Rui Gan,et al.  Cell-free protein synthesis: applications come of age. , 2012, Biotechnology advances.

[4]  R. Cone,et al.  Covalent attachment of hybridizable oligonucleotides to glass supports. , 1997, Analytical biochemistry.

[5]  J. Toulmé,et al.  Specific inhibition of mRNA translation by complementary oligonucleotides covalently linked to intercalating agents. , 1986, Proceedings of the National Academy of Sciences of the United States of America.

[6]  R. ffrench-Constant,et al.  Cell-free synthesis and characterization of a novel cytotoxic pierisin-like protein from the cabbage butterfly Pieris rapae. , 2011, Toxicon : official journal of the International Society on Toxinology.

[7]  S. Kubick,et al.  Cell‐free protein expression based on extracts from CHO cells , 2014, Biotechnology and bioengineering.

[8]  J. Swartz,et al.  High yield cell-free production of integral membrane proteins without refolding or detergents. , 2008, Biochimica et biophysica acta.

[9]  Y. Husimi,et al.  Solid-phase translation and RNA–protein fusion: a novel approach for folding quality control and direct immobilization of proteins using anchored mRNA , 2006, Nucleic acids research.

[10]  A. Spirin,et al.  A continuous cell-free translation system capable of producing polypeptides in high yield. , 1988, Science.

[11]  E. Kobatake,et al.  Stabilization and translation of immobilized mRNA on latex beads for cell-free protein synthesis system , 1999, Applied Biochemistry and Biotechnology.

[12]  Miles Miller,et al.  Alzheimer's Therapeutics Targeting Amyloid Beta 1–42 Oligomers I: Abeta 42 Oligomer Binding to Specific Neuronal Receptors Is Displaced by Drug Candidates That Improve Cognitive Deficits , 2014, PloS one.

[13]  K. Kain,et al.  Expression-PCR (E-PCR): overview and applications. , 1994, PCR methods and applications.

[14]  N. Budisa Expression of ‘Tailor-Made’ Proteins via Incorporation of Synthetic Amino Acids by Using Cell-Free Protein Synthesis , 2003 .

[15]  N. Dias,et al.  Antisense oligonucleotides: basic concepts and mechanisms. , 2002, Molecular cancer therapeutics.

[16]  Junhao Yang,et al.  Rapid expression of vaccine proteins for B-cell lymphoma in a cell-free system. , 2005, Biotechnology and bioengineering.

[17]  S. Kubick,et al.  IRES-Mediated Translation of Membrane Proteins and Glycoproteins in Eukaryotic Cell-Free Systems , 2013, PloS one.

[18]  C. Choi,et al.  A Semicontinuous Prokaryotic Coupled Transcription/Translation System Using a Dialysis Membrane , 1996, Biotechnology progress (Print).

[19]  Geoffrey Chang,et al.  The past, present and future of cell-free protein synthesis. , 2005, Trends in biotechnology.

[20]  Hiroko Yamada,et al.  Human protein factory for converting the transcriptome into an in vitro–expressed proteome , 2008, Nature Methods.

[21]  M. Carbone,et al.  The Role of Environmental Carcinogens, Viruses, and Genetic , 2002, Cancer biology & therapy.

[22]  Claus Duschl,et al.  Production of functional antibody fragments in a vesicle-based eukaryotic cell-free translation system. , 2013, Journal of biotechnology.

[23]  S. Kubick,et al.  Developing cell-free protein synthesis systems: a focus on mammalian cells , 2014 .

[24]  R. Stroud,et al.  Cell‐free complements in vivo expression of the E. coli membrane proteome , 2007, Protein science : a publication of the Protein Society.

[25]  C. Cantor,et al.  THERMOSTABILITY AND CONFORMATIONAL CHANGES UPON BINDING , 1997 .

[26]  Jim Swartz,et al.  Developing cell-free biology for industrial applications , 2006, Journal of Industrial Microbiology and Biotechnology.

[27]  T. Schmidt,et al.  Cell-free synthesis of membrane proteins: tailored cell models out of microsomes. , 2014, Biochimica et biophysica acta.

[28]  E. Southern,et al.  Steric factors influencing hybridisation of nucleic acids to oligonucleotide arrays. , 1997, Nucleic acids research.

[29]  A. Spirin,et al.  Continuous-exchange protein-synthesizing systems. , 2007, Methods in molecular biology.

[30]  R. Georgiadis,et al.  The effect of surface probe density on DNA hybridization. , 2001, Nucleic acids research.

[31]  J. Lenormand,et al.  Production of membrane proteins using cell–free expression systems , 2007, Expert review of proteomics.

[32]  E. Southern,et al.  Oligonucleotide hybridizations on glass supports: a novel linker for oligonucleotide synthesis and hybridization properties of oligonucleotides synthesised in situ. , 1992, Nucleic acids research.

[33]  Volker A. Erdmann,et al.  Chapter 2 In Vitro Synthesis of Posttranslationally Modified Membrane Proteins , 2009 .

[34]  B. Torondel,et al.  A Systematic Review of the Health and Social Effects of Menstrual Hygiene Management , 2013, PloS one.

[35]  Junhao Yang,et al.  Cell-free production of scFv fusion proteins: an efficient approach for personalized lymphoma vaccines. , 2007, Blood.

[36]  Frank F. Bier,et al.  Synthesis of membrane proteins in eukaryotic cell‐free systems , 2013 .

[37]  S. Kubick,et al.  Cell-free synthesis of functional thermostable direct hemolysins of Vibrio parahaemolyticus. , 2013, Toxicon : official journal of the International Society on Toxinology.

[38]  P G Schultz,et al.  A general method for site-specific incorporation of unnatural amino acids into proteins. , 1989, Science.

[39]  T. Sulchek,et al.  Insertion of membrane proteins into discoidal membranes using a cell-free protein expression approach. , 2008, Journal of proteome research.

[40]  T. Peterson,et al.  Membrane protein expression: no cells required. , 2009, Trends in biotechnology.

[41]  D. Kelso,et al.  DNA hybridization on microparticles: determining capture-probe density and equilibrium dissociation constants. , 1999, Nucleic acids research.

[42]  A. Buhot,et al.  Hybridization at a surface: the role of spacers in DNA microarrays. , 2006, Langmuir : the ACS journal of surfaces and colloids.

[43]  P. Piunno,et al.  Effects of Oligonucleotide Immobilization Density on Selectivity of Quantitative Transduction of Hybridization of Immobilized DNA , 2000 .

[44]  S. Dübel,et al.  Cell-free eukaryotic systems for the production, engineering, and modification of scFv antibody fragments , 2014, Engineering in life sciences.

[45]  A. Spirin,et al.  Functional antibody production using cell-free translation: Effects of protein disulfide isomerase and chaperones , 1997, Nature Biotechnology.

[46]  Thomas Schmidt,et al.  Membrane protein synthesis in cell‐free systems: From bio‐mimetic systems to bio‐membranes , 2014, FEBS letters.

[47]  Tsuyoshi Fujiwara,et al.  An unnatural base pair for incorporating amino acid analogs into proteins , 2002, Nature Biotechnology.

[48]  G. Grandi In Vitro Transcription and Translation Protocols , 2007, Methods in Molecular Biology™.

[49]  Marco G. Casteleijn,et al.  Expression without boundaries: cell-free protein synthesis in pharmaceutical research. , 2013, International journal of pharmaceutics.

[50]  Dong-Myung Kim,et al.  Regeneration of adenosine triphosphate from glycolytic intermediates for cell-free protein synthesis. , 2001, Biotechnology and bioengineering.

[51]  Dan S. Tawfik,et al.  Directed evolution of an extremely fast phosphotriesterase by in vitro compartmentalization , 2003, The EMBO journal.

[52]  Stefan Kubick,et al.  Cell-free systems: functional modules for synthetic and chemical biology. , 2013, Advances in biochemical engineering/biotechnology.