Pest status, molecular evolution, and epigenetic factors derived from the genome assembly of Frankliniella fusca, a thysanopteran phytovirus vector

[1]  Hehe Wang,et al.  Spatial and temporal patterns of Frankliniella fusca (Thysanoptera: Thripidae) in wheat agroecosystems , 2022, Journal of Applied Entomology.

[2]  D. Rotenberg,et al.  Integration of transcriptomics and network analysis reveals co-expressed genes in Frankliniella occidentalis larval guts that respond to tomato spotted wilt virus infection , 2021, BMC Genomics.

[3]  W. Wang,et al.  Membrane association of importin α facilitates viral entry into salivary gland cells of vector insects , 2021, Proceedings of the National Academy of Sciences.

[4]  H. Cui,et al.  A review on the DNA methyltransferase family of insects: Aspect and prospects. , 2021, International journal of biological macromolecules.

[5]  M. Goodisman,et al.  The impact of epigenetic information on genome evolution , 2021, Philosophical Transactions of the Royal Society B.

[6]  Joanna L. Kelley,et al.  Long Reads Are Revolutionizing 20 Years of Insect Genome Sequencing , 2021, bioRxiv.

[7]  M. Ghanim,et al.  A De Novo Transcriptomics Approach Reveals Genes Involved in Thrips Tabaci Resistance to Spinosad , 2021, Insects.

[8]  K. Lu,et al.  The role of cytochrome P450-mediated detoxification in insect adaptation to xenobiotics. , 2020, Current opinion in insect science.

[9]  B. Calla.  Signatures of selection and evolutionary relevance of cytochrome P450 s in plant-insect interactions. , 2020, Current opinion in insect science.

[10]  Silvio C. E. Tosatto,et al.  The InterPro protein families and domains database: 20 years on , 2020, Nucleic Acids Res..

[11]  Silvio C. E. Tosatto,et al.  Pfam: The protein families database in 2021 , 2020, Nucleic Acids Res..

[12]  K. Zhu‐Salzman,et al.  An Aphid-Secreted Salivary Protease Activates Plant Defense in Phloem , 2020, Current Biology.

[13]  T. Itoh,et al.  Insights into the genomic evolution of insects from cricket genomes , 2021, Communications Biology.

[14]  A. Hoffmann,et al.  Chromosome‐level assembly of the melon thrips genome yields insights into evolution of a sap‐sucking lifestyle and pesticide resistance , 2020, Molecular ecology resources.

[15]  C. Rosa,et al.  Thrips as the Transmission Bottleneck for Mixed Infection of Two Orthotospoviruses , 2020, Plants.

[16]  Robert M. Waterhouse,et al.  Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest , 2020, BMC Genomics.

[17]  Robert M. Waterhouse,et al.  Genome-enabled insights into the biology of thrips as crop pests , 2020, BMC Biology.

[18]  Samuel H. Lewis,et al.  Widespread conservation and lineage-specific diversification of genome-wide DNA methylation patterns across arthropods , 2020, bioRxiv.

[19]  M. Capurro,et al.  The first characterization of a cystatin and a cathepsin L-like peptidase from Aedes aegypti and their possible role in DENV infection by the modulation of apoptosis. , 2019, International journal of biological macromolecules.

[20]  Olga Chernomor,et al.  IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era , 2019, bioRxiv.

[21]  Robert J. Schmitz,et al.  DNA Methylation: Shared and Divergent Features across Eukaryotes. , 2019, Trends in genetics : TIG.

[22]  S. Reitz,et al.  A global invasion by the thrip, Frankliniella occidentalis: Current virus vector status and its management , 2019, Insect science.

[23]  M. Abney,et al.  Comparison of transcriptomes of an orthotospovirus vector and non-vector thrips species , 2019, PloS one.

[24]  S. Griffiths-Jones,et al.  Enhanced genome assembly and a new official gene set for Tribolium castaneum , 2019, BMC Genomics.

[25]  A. Whitfield,et al.  Discovery of Novel Thrips Vector Proteins That Bind to the Viral Attachment Protein of the Plant Bunyavirus Tomato Spotted Wilt Virus , 2019, Journal of Virology.

[26]  Shujun Ou,et al.  LTR_FINDER_parallel: parallelization of LTR_FINDER enabling rapid identification of long terminal repeat retrotransposons , 2019, Mobile DNA.

[27]  C. Liang,et al.  Generic Repeat Finder: A High-Sensitivity Tool for Genome-Wide De Novo Repeat Detection. , 2019, Plant physiology.

[28]  Thomas Peterson,et al.  Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline , 2019, Genome Biology.

[29]  Kaiyu Liu,et al.  Insect ATP-Binding Cassette (ABC) Transporters: Roles in Xenobiotic Detoxification and Bt Insecticidal Activity , 2019, International journal of molecular sciences.

[30]  Q. Xia,et al.  OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species , 2019, Nucleic Acids Res..

[31]  Jun Chul Park,et al.  The genome of the freshwater water flea Daphnia magna: A potential use for freshwater molecular ecotoxicology. , 2019, Aquatic toxicology.

[32]  Q. Xia,et al.  Distinct Functions of Bombyx mori Peptidoglycan Recognition Protein 2 in Immune Responses to Bacteria and Viruses , 2019, Front. Immunol..

[33]  Yu Lin,et al.  Assembly of long, error-prone reads using repeat graphs , 2018, Nature Biotechnology.

[34]  V. Nalam,et al.  Vector Competence of Thrips Species to Transmit Soybean Vein Necrosis Virus , 2019, Front. Microbiol..

[35]  X. Gu,et al.  TIR-Learner, a New Ensemble Method for TIR Transposable Element Annotation, Provides Evidence for Abundant New Transposable Elements in the Maize Genome. , 2019, Molecular plant.

[36]  A. Vilcinskas,et al.  Epigenetic mechanisms mediate the experimental evolution of resistance against parasitic fungi in the greater wax moth Galleria mellonella , 2019, Scientific Reports.

[37]  M. Goodisman,et al.  Epigenetics in Insects: Genome Regulation and the Generation of Phenotypic Diversity. , 2019, Annual review of entomology.

[38]  Davide Heller,et al.  eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses , 2018, Nucleic Acids Res..

[39]  S. Kelly,et al.  OrthoFinder: phylogenetic orthology inference for comparative genomics , 2019, Genome Biology.

[40]  M. Abney,et al.  Resistance to Thrips in Peanut and Implications for Management of Thrips and Thrips-Transmitted Orthotospoviruses in Peanut , 2018, Front. Plant Sci..

[41]  The Gene Ontology Consortium,et al.  The Gene Ontology Resource: 20 years and still GOing strong , 2018, Nucleic Acids Res..

[42]  Silvio C. E. Tosatto,et al.  The Pfam protein families database in 2019 , 2018, Nucleic Acids Res..

[43]  Minoru Kanehisa,et al.  New approach for understanding genome variations in KEGG , 2018, Nucleic Acids Res..

[44]  J. Gore,et al.  Neonicotinoid Insecticide Resistance in Tobacco Thrips (Thysanoptera: Thripidae) of Mississippi. , 2018, Journal of economic entomology.

[45]  N. Durand,et al.  Glutathione-S-Transferases in the Olfactory Organ of the Noctuid Moth Spodoptera littoralis, Diversity and Conservation of Chemosensory Clades , 2018, Front. Physiol..

[46]  Daniel B. Sloan,et al.  Gene content evolution in the arthropods , 2018, bioRxiv.

[47]  Jian Wang,et al.  WEGO 2.0: a web tool for analyzing and plotting GO annotations, 2018 update , 2018, Nucleic Acids Res..

[48]  J. Vontas,et al.  The role of glutathione S-transferases (GSTs) in insecticide resistance in crop pests and disease vectors. , 2018, Current opinion in insect science.

[49]  K. Heinz,et al.  Comparison of Frankliniella fusca and Frankliniella occidentalis (Thysanoptera: Thripidae) as Vectors for a Peanut Strain of Tomato Spotted Wilt Orthotospovirus , 2018, Environmental Entomology.

[50]  Alejandro A. Schäffer,et al.  VecScreen_plus_taxonomy: imposing a tax(onomy) increase on vector contamination screening , 2018, Bioinform..

[51]  Seth M. Bybee,et al.  Firefly genomes illuminate parallel origins of bioluminescence in beetles , 2018, eLife.

[52]  Shujun Ou,et al.  LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons1[OPEN] , 2017, Plant Physiology.

[53]  Wencai Jie,et al.  DNA methylation in silkworm genome may provide insights into epigenetic regulation of response to Bombyx mori cypovirus infection , 2017, Scientific Reports.

[54]  Hong Lu,et al.  Genome sequence of the small brown planthopper, Laodelphax striatellus , 2017, GigaScience.

[55]  Brian Bushnell,et al.  BBMerge – Accurate paired shotgun read merging via overlap , 2017, PloS one.

[56]  Robert M. Waterhouse,et al.  Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome , 2017, Genome Biology.

[57]  Monica F. Poelchau,et al.  Hemimetabolous genomes reveal molecular basis of termite eusociality , 2017, Nature Ecology & Evolution.

[58]  Ying Liu,et al.  Elevated carboxylesterase activity contributes to the lambda-cyhalothrin insensitivity in quercetin fed Helicoverpa armigera (Hübner) , 2017, PloS one.

[59]  Heng Li,et al.  Minimap2: pairwise alignment for nucleotide sequences , 2017, Bioinform..

[60]  A. Culbreath,et al.  Transcriptome changes associated with Tomato spotted wilt virus infection in various life stages of its thrips vector, Frankliniella fusca (Hinds). , 2017, The Journal of general virology.

[61]  L. Kang,et al.  The c-Jun N-terminal kinase pathway of a vector insect is activated by virus capsid protein and promotes viral replication , 2017, eLife.

[62]  A. von Haeseler,et al.  UFBoot2: Improving the Ultrafast Bootstrap Approximation , 2017, bioRxiv.

[63]  S. Kelly,et al.  STRIDE: Species Tree Root Inference from Gene Duplication Events , 2017, bioRxiv.

[64]  H. Czosnek,et al.  The Involvement of Heat Shock Proteins in the Establishment of Tomato Yellow Leaf Curl Virus Infection , 2017, Front. Plant Sci..

[65]  Huanming Yang,et al.  Genome sequence of a rice pest, the white-backed planthopper (Sogatella furcifera) , 2017, GigaScience.

[66]  Robert J. Schmitz,et al.  Evolution of DNA Methylation across Insects , 2016, Molecular biology and evolution.

[67]  Honghe Sun,et al.  The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance , 2016, BMC Biology.

[68]  Luis Pedro Coelho,et al.  Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper , 2016, bioRxiv.

[69]  Dayu Zhang,et al.  Molecular Characterization of Two Fatty Acyl-CoA Reductase Genes From Phenacoccus solenopsis (Hemiptera: Pseudococcidae) , 2016, Journal of insect science.

[70]  Pavel A. Pevzner,et al.  Assembly of long error-prone reads using de Bruijn graphs , 2016, Proceedings of the National Academy of Sciences.

[71]  Thomas M. Chappell,et al.  Frankliniella fusca resistance to neonicotinoid insecticides: an emerging challenge for cotton pest management in the eastern United States. , 2016, Pest management science.

[72]  D. Schneweis,et al.  Thrips transmission of tospoviruses. , 2015, Current opinion in virology.

[73]  Evgeny M. Zdobnov,et al.  BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs , 2015, Bioinform..

[74]  Kin-Fan Au,et al.  PacBio Sequencing and Its Applications , 2015, Genom. Proteom. Bioinform..

[75]  A. Mally,et al.  Correlation between the DNA methyltransferase (Dnmt) gene family and genome-wide 5-methylcytosine (5mC) in rotifer, copepod, and fish , 2015, Genes & Genomics.

[76]  S. Kelly,et al.  OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy , 2015, Genome Biology.

[77]  G. Ast,et al.  The alternative role of DNA methylation in splicing regulation. , 2015, Trends in genetics : TIG.

[78]  Justin Zobel,et al.  Bandage: interactive visualization of de novo genome assemblies , 2015, bioRxiv.

[79]  Evgeniya N Andreyeva,et al.  The Release 6 reference sequence of the Drosophila melanogaster genome , 2015, Genome research.

[80]  Shanlin Liu,et al.  Genomes of the rice pest brown planthopper and its endosymbionts reveal complex complementary contributions for host adaptation , 2014, Genome Biology.

[81]  Christina A. Cuomo,et al.  Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement , 2014, PloS one.

[82]  W. Huber,et al.  Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.

[83]  A. von Haeseler,et al.  IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies , 2014, Molecular biology and evolution.

[84]  Chunguang Du,et al.  HelitronScanner uncovers a large overlooked cache of Helitron transposons in many plant genomes , 2014, Proceedings of the National Academy of Sciences.

[85]  Jun Wang,et al.  Molecular traces of alternative social organization in a termite genome , 2014, Nature Communications.

[86]  Matthew Fraser,et al.  InterProScan 5: genome-scale protein function classification , 2014, Bioinform..

[87]  Alexandros Stamatakis,et al.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies , 2014, Bioinform..

[88]  Raquel Assis,et al.  Neofunctionalization of young duplicate genes in Drosophila , 2013, Proceedings of the National Academy of Sciences.

[89]  Alexey A. Gurevich,et al.  QUAST: quality assessment tool for genome assemblies , 2013, Bioinform..

[90]  M. Goodisman,et al.  Evidence of a conserved functional role for DNA methylation in termites , 2013, Insect molecular biology.

[91]  M. Goodisman,et al.  Patterning and Regulatory Associations of DNA Methylation Are Mirrored by Histone Modifications in Insects , 2013, Genome biology and evolution.

[92]  J. Johnston,et al.  Genome size and ploidy of Thysanoptera , 2013, Insect molecular biology.

[93]  A. Jacobson,et al.  Specific Insect-Virus Interactions Are Responsible for Variation in Competency of Different Thrips tabaci Isolines to Transmit Different Tomato Spotted Wilt Virus Isolates , 2013, PloS one.

[94]  K. Katoh,et al.  MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability , 2013, Molecular biology and evolution.

[95]  A. Culbreath,et al.  Direct and indirect effects of a thrips‐transmitted Tospovirus on the preference and fitness of its vector, Frankliniella fusca , 2012 .

[96]  M. Yandell,et al.  A beginner's guide to eukaryotic genome annotation , 2012, Nature Reviews Genetics.

[97]  W. Huber,et al.  Detecting differential usage of exons from RNA-seq data , 2012, Genome research.

[98]  Steven L Salzberg,et al.  Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.

[99]  M. Ghanim,et al.  Implication of Bemisia tabaci Heat Shock Protein 70 in Begomovirus-Whitefly Interactions , 2012, Journal of Virology.

[100]  Mark Yandell,et al.  MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects , 2011, BMC Bioinformatics.

[101]  Stefan R. Henz,et al.  The genome of Tetranychus urticae reveals herbivorous pest adaptations , 2011, Nature.

[102]  Heng Li,et al.  A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data , 2011, Bioinform..

[103]  H. J. Popham,et al.  Baculovirus Induced Transcripts in Hemocytes from the Larvae of Heliothis virescens , 2011, Viruses.

[104]  D. Cook,et al.  Biology, Crop Injury, and Management of Thrips (Thysanoptera: Thripidae) Infesting Cotton Seedlings in the United States , 2011 .

[105]  Colin N. Dewey,et al.  RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome , 2011, BMC Bioinformatics.

[106]  Matko Bosnjak,et al.  REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms , 2011, PloS one.

[107]  D. Ullman,et al.  Infection with a plant virus modifies vector feeding behavior , 2011, Proceedings of the National Academy of Sciences.

[108]  S. Diffie,et al.  Thrips Vectors of Tospoviruses , 2011 .

[109]  Carl Kingsford,et al.  A fast, lock-free approach for efficient parallel counting of occurrences of k-mers , 2011, Bioinform..

[110]  S. Forêt,et al.  The Honey Bee Epigenomes: Differential Methylation of Brain DNA in Queens and Workers , 2010, PLoS biology.

[111]  P. Roux,et al.  Differential Protein Modulation in Midguts of Aedes aegypti Infected with Chikungunya and Dengue 2 Viruses , 2010, PloS one.

[112]  M. Goodisman,et al.  Functional Conservation of DNA Methylation in the Pea Aphid and the Honeybee , 2010, Genome biology and evolution.

[113]  Evgeny M. Zdobnov,et al.  Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle , 2010, Proceedings of the National Academy of Sciences.

[114]  G. K. Davis,et al.  Genome Sequence of the Pea Aphid Acyrthosiphon pisum , 2010, PLoS biology.

[115]  Aaron R. Quinlan,et al.  BIOINFORMATICS APPLICATIONS NOTE , 2022 .

[116]  Ning Ma,et al.  BLAST+: architecture and applications , 2009, BMC Bioinformatics.

[117]  Steven J. M. Jones,et al.  Circos: an information aesthetic for comparative genomics. , 2009, Genome research.

[118]  M. Goodisman,et al.  DNA methylation is widespread and associated with differential gene expression in castes of the honeybee, Apis mellifera , 2009, Proceedings of the National Academy of Sciences.

[119]  Gonçalo R. Abecasis,et al.  The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..

[120]  S. Reitz.  Biology and Ecology of the Western Flower Thrips (Thysanoptera: Thripidae): The Making of a Pest , 2009 .

[121]  J. Plotkin,et al.  The Population Genetics of dN/dS , 2008, PLoS genetics.

[122]  M. Redinbaugh,et al.  Insect vector interactions with persistently transmitted viruses. , 2008, Annual review of phytopathology.

[123]  S. Diffie,et al.  Thysanoptera of Southeastern U.S.A.: A checklist for Florida and Georgia , 2008 .

[124]  M. Robles,et al.  University of Birmingham High throughput functional annotation and data mining with the Blast2GO suite , 2022 .

[125]  Peer Bork,et al.  The Genome of the Model Beetle and Pest Tribolium Castaneum Vertebrate-specific Orthologues Insect-specific Orthologues Homology Undetectable Similarity , 2022 .

[126]  B. Nault,et al.  Temperature and Precipitation Affect Seasonal Patterns of Dispersing Tobacco Thrips, Frankliniella fusca, and Onion Thrips, Thrips tabaci (Thysanoptera: Thripidae) Caught on Sticky Traps , 2008, Environmental entomology.

[127]  Stefan Kurtz,et al.  LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons , 2008, BMC Bioinformatics.

[128]  Ziheng Yang.  PAML 4: phylogenetic analysis by maximum likelihood. , 2007, Molecular biology and evolution.

[129]  R. Cannon,et al.  A review of the pest status and control options for Thrips palmi , 2007 .

[130]  K. H. Wolfe,et al.  When gene marriages don't work out: divorce by subfunctionalization. , 2007, Trends in genetics : TIG.

[131]  Zhao Xu,et al.  LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons , 2007, Nucleic Acids Res..

[132]  G. Kennedy,et al.  Effects of tomato spotted wilt virus isolates, host plants, and temperature on survival, size, and development time of Frankliniella occidentalis , 2007 .

[133]  Juan Yin,et al.  AcMNPV ORF38 protein has the activity of ADP-ribose pyrophosphatase and is important for virus replication. , 2007, Virology.

[134]  Virendra Kumar,et al.  Identification of a Soluble NADPH Oxidoreductase (BmNOX) with Antiviral Activites in the Gut Juice of Bombyx mori , 2007, Bioscience, biotechnology, and biochemistry.

[135]  Peer Bork,et al.  PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments , 2006, Nucleic Acids Res..

[136]  Lin Fang,et al.  WEGO: a web tool for plotting GO annotations , 2006, Nucleic Acids Res..

[137]  A. Schneemann,et al.  Essential function in vivo for Dicer-2 in host defense against RNA viruses in drosophila , 2006, Nature Immunology.

[138]  G. Kennedy,et al.  Summer weeds as hosts for Frankliniella occidentalis and Frankliniella fusca (Thysanoptera: Thripidae) and as reservoirs for tomato spotted wilt Tospovirus in North Carolina. , 2005, Journal of economic entomology.

[139]  Juan Miguel García-Gómez,et al.  BIOINFORMATICS APPLICATIONS NOTE Sequence analysis Manipulation of FASTQ data with Galaxy , 2005 .

[140]  Burkhard Morgenstern,et al.  AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints , 2005, Nucleic Acids Res..

[141]  D. Liberles,et al.  Subfunctionalization of duplicated genes as a transition state to neofunctionalization , 2005, BMC Evolutionary Biology.

[142]  A. Whitfield,et al.  Thrips and tospoviruses come of age: mapping determinants of insect transmission. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[143]  G. Kennedy,et al.  Effects of tomato spotted wilt virus (TSWV) isolates, host plants, and temperature on survival, size, and development time of Frankliniella fusca , 2005 .

[144]  M. Sabelis,et al.  Herbivore arthropods benefit from vectoring plant-viruses , 2004 .

[145]  Ian Korf,et al.  Gene finding in novel genomes , 2004, BMC Bioinformatics.

[146]  L. Mound,et al.  Tospovirus transmission depends on thrips ontogeny. , 2004, Virus research.

[147]  B. Nault,et al.  Seasonal patterns of adult thrips dispersal and implications for management in eastern Virginia tomato fields , 2003 .

[148]  J. Sherwood,et al.  Dynamics of Tomato spotted wilt virus Replication in the Alimentary Canal of Two Thrips Species. , 2002, Phytopathology.

[149]  Anton J. Enright,et al.  An efficient algorithm for large-scale detection of protein families. , 2002, Nucleic acids research.

[150]  J. Van lent,et al.  Factors determining vector competence and specificity for transmission of Tomato spotted wilt virus. , 2002, The Journal of general virology.

[151]  J. Ohnishi,et al.  Replication of Tomato spotted wilt virus After Ingestion by Adult Thrips setosus is Restricted to Midgut Epithelial Cells. , 2001, Phytopathology.

[152]  Ziheng Yang,et al.  Statistical methods for detecting molecular adaptation , 2000, Trends in Ecology & Evolution.

[153]  J. Sherwood,et al.  Interaction of Tomato Spotted Wilt Tospovirus (TSWV) Glycoproteins with a Thrips Midgut Protein, a Potential Cellular Receptor for TSWV. , 1998, Phytopathology.

[154]  K. Degtyarenko.  Structural domains of P450-containing monooxygenase systems. , 1995, Protein engineering.

[155]  P. Jones,et al.  The rate of hydrolytic deamination of 5-methylcytosine in double-stranded DNA. , 1994, Nucleic acids research.

[156]  R. Roberts,et al.  Sequence motifs specific for cytosine methyltransferases. , 1988, Gene.

[157]  G. Pertea,et al.  GFF Utilities: GffRead and GffCompare. , 2020, F1000Research.

[158]  A. Mally,et al.  Correlation between the DNA methyltransferase (Dnmt) gene family and genome-wide 5-methylcytosine (5mC) in rotifer, copepod, and fish , 2015, Genes & Genomics.

[159]  Thomas R. Gingeras,et al.  STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..

[160]  G. Fan,et al.  DNA Methylation and Its Basic Function , 2013, Neuropsychopharmacology.

[161]  Hilde van der Togt,et al.  Publisher's Note , 2003, J. Netw. Comput. Appl..

[162]  Hiroyuki Ogata,et al.  KEGG: Kyoto Encyclopedia of Genes and Genomes , 1999, Nucleic Acids Res..

[163]  G. J. Blomquist,et al.  Characterization of the acyl-CoA desaturase in the housefly, Musca domestica L. , 1982 .