An Analysis of Differences in Biological Pathway Resources
暂无分享,去创建一个
[1] Gary D Bader,et al. BioPAX – A community standard for pathway data sharing , 2010, Nature Biotechnology.
[2] Hongfei Lin,et al. Integrating Various Resources for Gene Name Normalization , 2012, PloS one.
[3] Sanghyuk Lee,et al. hiPathDB: a human-integrated pathway database with facile visualization , 2011, Nucleic Acids Res..
[4] Gary D. Bader,et al. Pathguide: a Pathway Resource List , 2005, Nucleic Acids Res..
[5] Ryan Miller,et al. WikiPathways: capturing the full diversity of pathway knowledge , 2015, Nucleic Acids Res..
[6] Anne Morgat,et al. UniPathway: a resource for the exploration and annotation of metabolic pathways , 2011, Nucleic Acids Res..
[7] M. Campbell,et al. PANTHER: a library of protein families and subfamilies indexed by function. , 2003, Genome research.
[8] Henning Hermjakob,et al. The Reactome pathway knowledgebase , 2013, Nucleic Acids Res..
[9] Julio Saez-Rodriguez,et al. BioServices: a common Python package to access biological Web Services programmatically , 2013, Bioinform..
[10] Peter D. Karp,et al. A systematic comparison of the MetaCyc and KEGG pathway databases , 2013, BMC Bioinformatics.
[11] Ali Shojaie,et al. Using random walks to identify cancer-associated modules in expression data , 2013, BioData Mining.
[12] Tamer Kahveci,et al. SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings , 2010, J. Comput. Biol..
[13] Yike Guo,et al. Consistency, comprehensiveness, and compatibility of pathway databases , 2010, BMC Bioinformatics.
[14] Hiroaki Kitano,et al. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models , 2003, Bioinform..
[15] Ram Rup Sarkar,et al. Comparison of human cell signaling pathway databases—evolution, drawbacks and challenges , 2015, Database J. Biol. Databases Curation.
[16] Hiroyuki Ogata,et al. KEGG: Kyoto Encyclopedia of Genes and Genomes , 1999, Nucleic Acids Res..
[17] Ralf Herwig,et al. ConsensusPathDB—a database for integrating human functional interaction networks , 2008, Nucleic Acids Res..
[18] Marta Simeoni,et al. MP-Align: alignment of metabolic pathways , 2014, BMC Systems Biology.
[19] Henning Hermjakob,et al. R spider: a network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases , 2010, Nucleic Acids Res..
[20] Gerbert A. Jansen,et al. Knowledge representation in metabolic pathway databases , 2014, Briefings Bioinform..
[21] Gerbert A. Jansen,et al. Critical assessment of human metabolic pathway databases: a stepping stone for future integration , 2011, BMC Systems Biology.
[22] C. Sander,et al. The HUPO PSI's Molecular Interaction format—a community standard for the representation of protein interaction data , 2004, Nature Biotechnology.
[23] Henning Hermjakob,et al. The Reactome pathway Knowledgebase , 2015, Nucleic acids research.
[24] Gary D. Bader,et al. Pathway Commons, a web resource for biological pathway data , 2010, Nucleic Acids Res..
[25] Egon L. Willighagen,et al. The Chemical Translation Service—a web-based tool to improve standardization of metabolomic reports , 2010, Bioinform..
[26] P. Karp,et al. Computational prediction of human metabolic pathways from the complete human genome , 2004, Genome Biology.