Multi-scale imaging and analysis identify pan-embryo cell dynamics of germlayer formation in zebrafish

[1]  Ulrik Günther,et al.  Adaptive particle representation of fluorescence microscopy images , 2018, Nature Communications.

[2]  Srinivas C. Turaga,et al.  In Toto Imaging and Reconstruction of Post-Implantation Mouse Development at the Single-Cell Level , 2018, Cell.

[3]  Allon M. Klein,et al.  Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo , 2018, Science.

[4]  A. Regev,et al.  Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis , 2018, Science.

[5]  E. Wieschaus,et al.  Global morphogenetic flow is accurately predicted by the spatial distribution of myosin motors , 2018, eLife.

[6]  J. Huisken,et al.  A guide to light-sheet fluorescence microscopy for multiscale imaging , 2017, Nature Methods.

[7]  E. Callaway.  The visualizations transforming biology , 2016, Nature.

[8]  Nico Scherf,et al.  Biology-inspired visualization of morphogenetic motion in the zebrafish endoderm , 2016, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI).

[9]  Monika Ritsch-Marte,et al.  Cortical Contractility Triggers a Stochastic Switch to Fast Amoeboid Cell Motility , 2015, Cell.

[10]  Philipp J. Keller,et al.  Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data , 2014, Nature Methods.

[11]  Citlali Pérez Campos,et al.  High-speed panoramic light-sheet microscopy reveals global endodermal cell dynamics , 2013, Nature Communications.

[12]  W. Driever,et al.  Non-directional radial intercalation dominates deep cell behavior during zebrafish epiboly , 2013, Biology Open.

[13]  Guy B. Williams,et al.  QuickBundles, a Method for Tractography Simplification , 2012, Front. Neurosci..

[14]  V. Fleury.  Clarifying tetrapod embryogenesis by a dorso-ventral analysis of the tissue flows during early stages of chicken development , 2012, Biosyst..

[15]  S. Fisher,et al.  Bone regenerates via dedifferentiation of osteoblasts in the zebrafish fin. , 2011, Developmental cell.

[16]  Jarke J. van Wijk,et al.  Force‐Directed Edge Bundling for Graph Visualization , 2009, Comput. Graph. Forum.

[17]  D. G. Gibson,et al.  Enzymatic assembly of DNA molecules up to several hundred kilobases , 2009, Nature Methods.

[18]  Willy Supatto,et al.  Dynamic Analyses of Drosophila Gastrulation Provide Insights into Collective Cell Migration , 2008, Science.

[19]  Philipp J. Keller,et al.  Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy , 2008, Science.

[20]  A. Kuroiwa,et al.  Sdf1/Cxcr4 signaling controls the dorsal migration of endodermal cells during zebrafish gastrulation , 2008, Development.

[21]  C. Heisenberg,et al.  Tensile forces govern germ-layer organization in zebrafish , 2008, Nature Cell Biology.

[22]  P. Mourrain,et al.  Live Analysis of Endodermal Layer Formation Identifies Random Walk as a Novel Gastrulation Movement , 2008, Current Biology.

[23]  Frank Jülicher,et al.  Quantitative differences in tissue surface tension influence zebrafish germ layer positioning , 2008, HFSP journal.

[24]  P. Pouille,et al.  Cooperation of polarized cell intercalations drives convergence and extension of presomitic mesoderm during zebrafish gastrulation , 2008, The Journal of cell biology.

[25]  C. Heisenberg,et al.  Shield formation at the onset of zebrafish gastrulation , 2005, Development.

[26]  K. Kawakami,et al.  A transposon-mediated gene trap approach identifies developmentally regulated genes in zebrafish. , 2004, Developmental cell.

[27]  T. Lepage,et al.  Mezzo, a paired-like homeobox protein is an immediate target of Nodal signalling and regulates endoderm specification in zebrafish. , 2002, Development.

[28]  Lilianna Solnica-Krezel,et al.  Bmp activity gradient regulates convergent extension during zebrafish gastrulation. , 2002, Developmental biology.

[29]  M. S. Cooper,et al.  Morphogenetic domains in the yolk syncytial layer of axiating zebrafish embryos , 2001, Developmental dynamics : an official publication of the American Association of Anatomists.

[30]  C. Nüsslein-Volhard,et al.  Origin and development of the zebrafish endoderm. , 1999, Development.

[31]  M. Concha,et al.  Oriented cell divisions and cellular morphogenesis in the zebrafish gastrula and neurula: a time-lapse analysis. , 1998, Development.

[32]  C. Nüsslein-Volhard,et al.  Mutations affecting morphogenesis during gastrulation and tail formation in the zebrafish, Danio rerio. , 1996, Development.

[33]  C. Nüsslein-Volhard,et al.  The zebrafish epiboly mutants. , 1996, Development.

[34]  Ben Shneiderman,et al.  The eyes have it: a task by data type taxonomy for information visualizations , 1996, Proceedings 1996 IEEE Symposium on Visual Languages.

[35]  J. Shih,et al.  Distribution of tissue progenitors within the shield region of the zebrafish gastrula. , 1995, Development.

[36]  S. Fraser,et al.  Order and coherence in the fate map of the zebrafish nervous system. , 1995, Development.

[37]  C. Kimmel,et al.  Cell movements during epiboly and gastrulation in zebrafish. , 1990, Development.

[38]  C. Kimmel,et al.  Origin and organization of the zebrafish fate map. , 1990, Development.

[39]  R. D. Allen,et al.  Motility , 1981, The Journal of cell biology.

[40]  J. Lopreato,et al.  General system theory : foundations, development, applications , 1970 .

[41]  A. Goldberg.  General System Theory: Foundations, Development, Applications. , 1969 .

[42]  Lamar Johnson.  Library Service at the Junior-College Level , 1943, Teachers College Record: The Voice of Scholarship in Education.

[43]  R. Wetzel.  Untersuchungen am Hhnchen. Die Entwicklung des Keims whrend der ersten beiden Bruttage , 1929 .

[44]  Mark D. Urban,et al.  Transgenic zebrafish using transposable elements. , 2011, Methods in cell biology.

[45]  C. Heisenberg,et al.  Zebrafish gastrulation: cell movements, signals, and mechanisms. , 2007, International review of cytology.

[46]  L. Solnica-Krezel.  Pattern Formation in Zebrafish , 2002, Results and Problems in Cell Differentiation.

[47]  John Philip Trinkaus,et al.  Cells into Organs: The Forces That Shape the Embryo , 1984 .

[48]  E. Batschelet.  Circular statistics in biology , 1981 .

[49]  R. Wetzel.  Untersuchungen am Hühnchen , 1929 .