IDDI: integrated domain-domain interaction and protein interaction analysis system

[1]  Sailu Yellaboina,et al.  DOMINE: a comprehensive collection of known and predicted domain-domain interactions , 2010, Nucleic Acids Res..

[2]  Dmitrij Frishman,et al.  DIMA 3.0: Domain Interaction Map , 2010, Nucleic Acids Res..

[3]  K. Aihara,et al.  A discriminative approach for identifying domain–domain interactions from protein–protein interactions , 2010, Proteins.

[4]  Erik L. L. Sonnhammer,et al.  Comparative analysis and unification of domain-domain interaction networks , 2009, Bioinform..

[5]  Mei Liu,et al.  Knowledge-guided inference of domain–domain interactions from incomplete protein–protein interaction networks , 2009, Bioinform..

[6]  Min-Sung Kim,et al.  Combined Database System for Binary Protein Interaction and Co-complex Association , 2009, 2009 International Association of Computer Science and Information Technology - Spring Conference.

[7]  Brian R. King,et al.  A Top-Down Approach to Infer and Compare Domain-Domain Interactions across Eight Model Organisms , 2009, PloS one.

[8]  Sven-Eric Schelhorn,et al.  An integrative approach for predicting interactions of protein regions , 2008, ECCB.

[9]  Andrew J. Bordner,et al.  Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces , 2008, BMC Bioinformatics.

[10]  Teresa M. Przytycka,et al.  Interrogating domain-domain interactions with parsimony based approaches , 2008, BMC Bioinformatics.

[11]  Luonan Chen,et al.  Analysis on multi-domain cooperation for predicting protein-protein interactions , 2007, BMC Bioinformatics.

[12]  Alex Bateman,et al.  Reuse of structural domain–domain interactions in protein networks , 2007, BMC Bioinformatics.

[13]  Mudita Singhal,et al.  A domain-based approach to predict protein-protein interactions , 2007, BMC Bioinformatics.

[14]  K. Guimaraes,et al.  Predicting domain-domain interactions using a parsimony approach , 2006, Genome Biology.

[15]  Raja Jothi,et al.  Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions. , 2006, Journal of molecular biology.

[16]  S. Wuchty.  Topology and weights in a protein domain interaction network – a novel way to predict protein interactions , 2006, BMC Genomics.

[17]  Ting Chen,et al.  An integrated approach to the prediction of domain-domain interactions , 2006, BMC Bioinformatics.

[18]  Mei Liu,et al.  Prediction of protein-protein interactions using random decision forest framework , 2005, Bioinform..

[19]  Christopher J. Lee,et al.  Inferring protein domain interactions from databases of interacting proteins , 2005, Genome Biology.

[20]  Nianjun Liu,et al.  Inferring protein-protein interactions through high-throughput interaction data from diverse organisms , 2005, Bioinform..

[21]  T. Barrette,et al.  Probabilistic model of the human protein-protein interaction network , 2005, Nature Biotechnology.

[22]  Tom M. W. Nye,et al.  Statistical analysis of domains in interacting protein pairs , 2005, Bioinform..

[23]  Robert D. Finn,et al.  iPfam: visualization of protein?Cprotein interactions in PDB at domain and amino acid resolutions , 2005, Bioinform..

[24]  Robert B. Russell,et al.  3did: interacting protein domains of known three-dimensional structure , 2004, Nucleic Acids Res..

[25]  T. Pawson,et al.  Assembly of Cell Regulatory Systems Through Protein Interaction Domains , 2003, Science.

[26]  See-Kiong Ng,et al.  Integrative approach for computationally inferring protein domain interactions , 2003, SAC '03.

[27]  T. N. Bhat,et al.  The Protein Data Bank , 2000, Nucleic Acids Res..

[28]  K. Yoshikawa,et al.  Physical and Functional Interactions of Neuronal Growth Suppressor Necdin with p53* , 1999, The Journal of Biological Chemistry.