Topology prediction for helical transmembrane proteins at 86% accuracy–Topology prediction at 86% accuracy
暂无分享,去创建一个
[1] G J Williams,et al. The Protein Data Bank: a computer-based archival file for macromolecular structures. , 1978, Archives of biochemistry and biophysics.
[2] G vonHeijne,et al. Membrane proteins: the amino acid composition of membrane-penetrating segments. , 1981, European journal of biochemistry.
[3] G. von Heijne. Membrane proteins: the amino acid composition of membrane-penetrating segments. , 1981, European journal of biochemistry.
[4] R. Doolittle,et al. A simple method for displaying the hydropathic character of a protein. , 1982, Journal of molecular biology.
[5] P. Argos,et al. Structural prediction of membrane-bound proteins. , 2005, European journal of biochemistry.
[6] W. Kabsch,et al. Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features , 1983, Biopolymers.
[7] D. Eisenberg,et al. Analysis of membrane and surface protein sequences with the hydrophobic moment plot. , 1984, Journal of molecular biology.
[8] J. Deisenhofer,et al. Structure of the protein subunits in the photosynthetic reaction centre of Rhodopseudomonas viridis at 3Å resolution , 1985, Nature.
[9] T. Steitz,et al. Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins. , 1986, Annual review of biophysics and biophysical chemistry.
[10] G. von Heijne,et al. A new method for predkting signal sequence cleavage sites , 2022 .
[11] G. Heijne. The distribution of positively charged residues in bacterial inner membrane proteins correlates with the trans‐membrane topology , 1986, The EMBO journal.
[12] J. Beckwith,et al. A genetic approach to analyzing membrane protein topology. , 1986, Science.
[13] C. DeLisi,et al. Hydrophobicity scales and computational techniques for detecting amphipathic structures in proteins. , 1987, Journal of molecular biology.
[14] G. von Heijne,et al. Topogenic signals in integral membrane proteins. , 1988, European journal of biochemistry.
[15] G. Vonheijne,et al. Control of topology and mode of assembly of a polytopic membrane protein by positively charged residues , 1989, Nature.
[16] T A Rapoport,et al. Predicting the orientation of eukaryotic membrane-spanning proteins. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[17] S. Karlin,et al. Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[18] R. D. Simoni,et al. A topological analysis of subunit alpha from Escherichia coli F1F0-ATP synthase predicts eight transmembrane segments. , 1990, The Journal of biological chemistry.
[19] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[20] Gunnar von Heijne,et al. Fine-tuning the topology of a polytopic membrane protein: Role of positively and negatively charged amino acids , 1990, Cell.
[21] R. Dalbey. Positively charged residues are important determinants of membrane protein topology. , 1990, Trends in biochemical sciences.
[22] R. Henderson,et al. Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy. , 1990, Journal of molecular biology.
[23] G von Heijne,et al. Membrane proteins: from sequence to structure. , 1990, Protein engineering.
[24] Christian Bjørbæk,et al. The transmembrane topology of the α subunit from the ATPase in Escherichia coli analyzed by PhoA protein fusions , 1990 .
[25] Jon Beckwith,et al. The role of charged amino acids in the localization of secreted and membrane proteins , 1990, Cell.
[26] M. Degli Esposti,et al. A critical evaluation of the hydropathy profile of membrane proteins. , 1990, European journal of biochemistry.
[27] C. Sander,et al. Database of homology‐derived protein structures and the structural meaning of sequence alignment , 1991, Proteins.
[28] G. Heijne. Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule. , 1992, Journal of molecular biology.
[29] B. Dujon,et al. The complete DNA sequence of yeast chromosome III , 1992, Nature.
[30] G. Schulz,et al. Structure of porin refined at 1.8 A resolution. , 1992, Journal of molecular biology.
[31] Differentiation between transmembrane helices and peripheral helices by the deconvolution of circular dichroism spectra of membrane proteins , 1992, Protein science : a publication of the Protein Society.
[32] C. Deber,et al. Non-random distribution of amino acids in the transmembrane segments of human type I single span membrane proteins. , 1993, Journal of molecular biology.
[33] B. Rost,et al. Secondary structure prediction of all-helical proteins in two states. , 1993, Protein engineering.
[34] B. Rost,et al. Prediction of protein secondary structure at better than 70% accuracy. , 1993, Journal of molecular biology.
[35] J. Broome-Smith,et al. Gene-fusion techniques for determining membrane-protein topology , 1993 .
[36] S. Vries,et al. Mitochondrial cytochrome b: evolution and structure of the protein. , 1993, Biochimica et biophysica acta.
[37] G. von Heijne,et al. Predicting the topology of eukaryotic membrane proteins. , 1993, European journal of biochemistry.
[38] J Edelman,et al. Quadratic minimization of predictors for protein secondary structure. Application to transmembrane alpha-helices. , 1993, Journal of molecular biology.
[39] Terri L. Gilbert,et al. The ligand-binding domain in metabotropic glutamate receptors is related to bacterial periplasmic binding proteins , 1993, Neuron.
[40] John P. Overington,et al. Modeling α‐helical transmembrane domains: The calculation and use of substitution tables for lipid‐facing residues , 1993, Protein science : a publication of the Protein Society.
[41] Zhi-Xin Wang. Assessing the accuracy of protein secondary structure , 1994, Nature Structural Biology.
[42] A. Bairoch,et al. The SWISS-PROT protein sequence data bank: current status. , 1994, Nucleic acids research.
[43] W. Taylor,et al. Structure, transmembrane topology and helix packing of P‐type ion pumps , 1994, FEBS Letters.
[44] A. Bairoch. The ENZYME data bank. , 1993, Nucleic acids research.
[45] Burkhard Rost,et al. PHD - an automatic mail server for protein secondary structure prediction , 1994, Comput. Appl. Biosci..
[46] D. T. Jones,et al. A method for alpha-helical integral membrane protein fold prediction. , 1994, Proteins.
[47] W R Taylor,et al. A model recognition approach to the prediction of all-helical membrane protein structure and topology. , 1994, Biochemistry.
[48] F. Hucho,et al. Beta-structure in the membrane-spanning part of the nicotinic acetylcholine receptor (or how helical are transmembrane helices?). , 1994, Trends in biochemical sciences.
[49] B. Rost,et al. Redefining the goals of protein secondary structure prediction. , 1994, Journal of molecular biology.
[50] Jonathan A. Cooper,et al. Complete nucleotide sequence of Saccharomyces cerevisiae chromosome VIII. , 1994, Science.
[51] G. Schulz,et al. Refined structure of the porin from Rhodopseudomonas blastica. Comparison with the porin from Rhodobacter capsulatus. , 1994, Journal of molecular biology.
[52] C. Sander,et al. The HSSP database of protein structure-sequence alignments. , 1994, Nucleic acids research.
[53] C Sander,et al. Structure prediction of proteins--where are we now? , 1994, Current opinion in biotechnology.
[54] P Argos,et al. Prediction of transmembrane segments in proteins utilising multiple sequence alignments. , 1994, Journal of molecular biology.
[55] J. Rosenbusch,et al. Folding pattern diversity of integral membrane proteins. , 1994, Science.
[56] Hartmut Michel,et al. Structure at 2.8 Å resolution of cytochrome c oxidase from Paracoccus denitrificans , 1995, Nature.
[57] R. Fleischmann,et al. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. , 1995, Science.
[58] Søren Brunak,et al. Protein Folds: A Distance-Based Approach , 1995 .
[59] B Rost,et al. Progress of 1D protein structure prediction at last , 1995, Proteins.
[60] Burkhard Rost,et al. TOPITS: Threading One-Dimensional Predictions Into Three-Dimensional Structures , 1995, ISMB.
[61] B. Rost,et al. Transmembrane helices predicted at 95% accuracy , 1995, Protein science : a publication of the Protein Society.
[62] C. Sander,et al. Challenging times for bioinformatics , 1995, Nature.
[63] B. Rost. PHD: predicting one-dimensional protein structure by profile-based neural networks. , 1996, Methods in enzymology.
[64] Burkhard Rost,et al. Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming , 1996, ISMB.
[65] Piero Fariselli,et al. HTP: a neural network-based method for predicting the topology of helical transmembrane domains in proteins , 1996, Comput. Appl. Biosci..
[66] P Fariselli,et al. A predictor of transmembrane alpha-helix domains of proteins based on neural networks. , 1996, European biophysics journal : EBJ.