Circulating Cell Free DNA as Blood Based Biomarker in Breast Cancer

The prevalence of circulating cell free DNA (cfDNA) in the peripheral blood of healthy persons and patients with several different diseases is well known since decades. Especially in cancer patients high amounts of cfDNA can be found because of the higher cellular turnover in cancer cells. CfDNA integrity reflects the ratio of longer to shorter DNA fragments and therefore represents the relation between non-apoptotic and apoptotic cell death. For calculation of cfDNA and cfDNA integrity different non-specific repetitive DNA sequences have been used. In patients with breast cancer, several studies demonstrated the ability of cf DNA and cfDNA-integrity to discriminate between healthy persons and patients with breast cancer. However it remains still unclear if the use of non-tumour-specific cf DNA can be helpful in breast cancer diagnostic and monitoring of therapy. Next generation sequencing for somatic tumour specific mutations like PI3K or TP53 gene mutations in circulating cf DNA has successfully demonstrated to be accurate and feasible in patients with breast cancer. Tracking tumour- specific cf DNA may become a valuable tool for monitoring therapy and residual disease in breast cancer patients.

[1]  W. Holzgreve,et al.  Molecular Cancer Levels of Plasma Circulating Cell Free Nuclear and Mitochondrial Dna as Potential Biomarkers for Breast Tumors , 2009 .

[2]  J. C. Tsang,et al.  Circulating nucleic acids in plasma/serum , 2007, Pathology.

[3]  A. Harris,et al.  Quantitation of circulating DNA in the serum of breast cancer patients by real-time PCR , 2004, British Journal of Cancer.

[4]  M. Agostini,et al.  Circulating cell-free DNA: a promising marker of regional lymphonode metastasis in breast cancer patients. , 2012, Cancer biomarkers : section A of Disease markers.

[5]  R. Swaminathan,et al.  Circulating Nucleic Acids in Plasma and Serum , 2006, Annals of the New York Academy of Sciences.

[6]  H. Reber,et al.  Increased integrity of free circulating DNA in sera of patients with colorectal or periampullary cancer: direct quantitative PCR for ALU repeats. , 2006, Clinical chemistry.

[7]  W. El-Deiry,et al.  Overview of cell death signaling pathways , 2005, Cancer biology & therapy.

[8]  I. Talaat,et al.  Free Circulating Tumor DNA as a Diagnostic Marker for Breast Cancer , 2012, Journal of clinical laboratory analysis.

[9]  Johan Lindberg,et al.  Evaluation of Exome Sequencing to Estimate Tumor Burden in Plasma , 2014, PloS one.

[10]  K. Jung,et al.  Cell-free DNA in the blood as a solid tumor biomarker--a critical appraisal of the literature. , 2010, Clinica chimica acta; international journal of clinical chemistry.

[11]  U. Beuers,et al.  Nucleosomal DNA Fragments in Autoimmune Diseases , 2006, Annals of the New York Academy of Sciences.

[12]  Stella Mook,et al.  Individualization of therapy using Mammaprint: from development to the MINDACT Trial. , 2007, Cancer genomics & proteomics.

[13]  N. Dalay,et al.  Effect of Adjuvant Chemotherapy on Integrity of Free Serum DNA in Patients with Breast Cancer , 2008, Annals of the New York Academy of Sciences.

[14]  W. Holzgreve,et al.  Levels of circulating cell-free serum DNA in benign and malignant breast lesions. , 2007, The International journal of biological markers.

[15]  P. Albers,et al.  Cell-free circulating DNA: diagnostic value in patients with testicular germ cell cancer. , 2009, The Journal of urology.

[16]  V. Heinemann,et al.  Importance of CEA and CA 15-3 during disease progression in metastatic breast cancer patients. , 2007, Anticancer research.

[17]  B. Lämmle,et al.  Elevated nucleosome levels in systemic inflammation and sepsis* , 2003, Critical care medicine.

[18]  J. Vadgama,et al.  The Clinical Utilization of Circulating Cell Free DNA (CCFDNA) in Blood of Cancer Patients , 2013, International journal of molecular sciences.

[19]  E. Urso,et al.  Circulating Cell-Free DNA: A Promising Marker of Pathologic Tumor Response in Rectal Cancer Patients Receiving Preoperative Chemoradiotherapy , 2011, Annals of Surgical Oncology.

[20]  S. Holdenrieder,et al.  Methods for isolation of cell-free plasma DNA strongly affect DNA yield. , 2011, Clinica chimica acta; international journal of clinical chemistry.

[21]  K. Steffensen,et al.  Plasma HER2 amplification in cell-free DNA during neoadjuvant chemotherapy in breast cancer , 2013, Journal of Cancer Research and Clinical Oncology.

[22]  Carlos Caldas,et al.  Analysis of circulating tumor DNA to monitor metastatic breast cancer. , 2013, The New England journal of medicine.

[23]  C. Witt,et al.  Integrity of Cell‐Free Plasma DNA in Patients with Lung Cancer and Nonmalignant Lung Disease , 2008, Annals of the New York Academy of Sciences.

[24]  Taylor Murray,et al.  Cancer statistics, 2000 , 2000, CA: a cancer journal for clinicians.

[25]  A. Jemal,et al.  Global cancer statistics , 2011, CA: a cancer journal for clinicians.

[26]  F. O. Fackelmayer,et al.  DNA fragments in the blood plasma of cancer patients: quantitations and evidence for their origin from apoptotic and necrotic cells. , 2001, Cancer research.

[27]  P. Stieber,et al.  DNA Integrity in Plasma and Serum of Patients with Malignant and Benign Diseases , 2008, Annals of the New York Academy of Sciences.

[28]  S. Zeerleder The struggle to detect circulating DNA , 2006, Critical care.

[29]  M. Duffy,et al.  Survivin: a promising tumor biomarker. , 2007, Cancer letters.

[30]  F. Laval,et al.  Plasma DNA as a marker of cancerous cell death. Investigations in patients suffering from lung cancer and in nude mice bearing human tumours. , 1995, Cancer letters.

[31]  J. Shaw,et al.  Detection of HER2 amplification in circulating free DNA in patients with breast cancer , 2011, British Journal of Cancer.

[32]  Klaus Pantel,et al.  Cell-free nucleic acids as biomarkers in cancer patients , 2011, Nature Reviews Cancer.

[33]  S. Holdenrieder,et al.  Diagnostic relevance of plasma DNA and DNA integrity for breast cancer , 2014, Tumor Biology.

[34]  P. J. Pretorius,et al.  A Method for Characterization of Total Circulating DNA , 2008, Annals of the New York Academy of Sciences.

[35]  D. Berry,et al.  Effect of screening and adjuvant therapy on mortality from breast cancer. , 2006, The New England journal of medicine.

[36]  R. Catarino,et al.  Quantification of free circulating tumor DNA as a diagnostic marker for breast cancer. , 2008, DNA and cell biology.

[37]  M. Ranson,et al.  Detection of PIK3CA mutations in circulating free DNA in patients with breast cancer , 2010, Breast Cancer Research and Treatment.

[38]  K. Iczkowski,et al.  Cell-free DNA in human blood plasma: length measurements in patients with pancreatic cancer and healthy controls. , 1998, Pancreas.

[39]  M. Cronin,et al.  Gene expression and benefit of chemotherapy in women with node-negative, estrogen receptor-positive breast cancer. , 2006, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[40]  A. Harris,et al.  Prospective Study of Quantitation of Plasma DNA Levels in the Diagnosis of Malignant versus Benign Prostate Disease , 2005, Clinical Cancer Research.

[41]  B. Shapiro,et al.  Free DNA in the serum of cancer patients and the effect of therapy. , 1977, Cancer research.

[42]  M. Dowsett,et al.  Tracking tumor-specific mutations in circulating-free DNA to predict early relapse after treatment of primary breast cancer. , 2014 .

[43]  M. Stroun,et al.  Circulating nucleic acids in plasma or serum. , 2001, Clinica chimica acta; international journal of clinical chemistry.

[44]  Mariano Provencio,et al.  Tumor DNA in plasma at diagnosis of breast cancer patients is a valuable predictor of disease-free survival. , 2002, Clinical cancer research : an official journal of the American Association for Cancer Research.

[45]  S. Leung,et al.  Persistent Aberrations in Circulating DNA Integrity after Radiotherapy Are Associated with Poor Prognosis in Nasopharyngeal Carcinoma Patients , 2008, Clinical Cancer Research.

[46]  O. Stoetzer,et al.  Circulating nucleosomes and biomarkers of immunogenic cell death as predictive and prognostic markers in cancer patients undergoing cytotoxic therapy , 2012, Expert opinion on biological therapy.

[47]  A. Giuliano,et al.  Quantification of LINE1 in Circulating DNA as a Molecular Biomarker of Breast Cancer , 2008, Annals of the New York Academy of Sciences.

[48]  T. Höller,et al.  Impact of the menstrual cycle on circulating cell-free DNA. , 2010, Anticancer research.

[49]  D. Chan,et al.  Increased plasma DNA integrity in cancer patients. , 2003, Cancer research.

[50]  V. Heinemann,et al.  Prediction of response to neoadjuvant chemotherapy in breast cancer patients by circulating apoptotic biomarkers nucleosomes, DNAse, cytokeratin-18 fragments and survivin. , 2013, Cancer letters.

[51]  P. Vineis,et al.  Circulating free DNA in plasma or serum as biomarker of carcinogenesis: practical aspects and biological significance. , 2007, Mutation research.

[52]  A. Burd,et al.  Plasma cell-free DNA as an indicator of severity of injury in burn patients , 2006, Clinical chemistry and laboratory medicine.

[53]  R. Bast,et al.  American Society of Clinical Oncology 2007 update of recommendations for the use of tumor markers in breast cancer. , 2007, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[54]  Brigitte Rack,et al.  Detection of Circulating Tumor Cells in Peripheral Blood of Patients with Metastatic Breast Cancer: A Validation Study of the CellSearch System , 2007, Clinical Cancer Research.

[55]  S. Holdenrieder,et al.  Plasma DNA integrity indicates response to neoadjuvant chemotherapy in patients with locally confined breast cancer. , 2013, International journal of clinical pharmacology and therapeutics.

[56]  S. Linder Cytokeratin Markers Come of Age , 2007, Tumor Biology.

[57]  S. Holdenrieder,et al.  Circulating plasma DNA and DNA integrity in breast cancer patients undergoing neoadjuvant chemotherapy. , 2013, Clinica chimica acta; international journal of clinical chemistry.

[58]  A. Nekrutenko,et al.  Densities, length proportions, and other distributional features of repetitive sequences in the human genome estimated from 430 megabases of genomic sequence. , 2000, Gene.

[59]  H. Nielsen,et al.  National Academy of Clinical Biochemistry laboratory medicine practice guidelines for use of tumor markers in testicular, prostate, colorectal, breast, and ovarian cancers. , 2008, Clinical chemistry.

[60]  A. Giuliano,et al.  Prediction of breast tumor progression by integrity of free circulating DNA in serum. , 2006, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[61]  V. Heinemann,et al.  Circulating immunogenic cell death biomarkers HMGB1 and RAGE in breast cancer patients during neoadjuvant chemotherapy , 2013, Tumor Biology.

[62]  E. Dahl,et al.  Dual role of macrophage migration inhibitory factor (MIF) in human breast cancer , 2009, BMC Cancer.

[63]  Y. Lo,et al.  Plasma DNA as a prognostic marker for stroke patients with negative neuroimaging within the first 24 h of symptom onset. , 2006, Resuscitation.

[64]  V. Heinemann,et al.  Apoptosis-related biomarkers sFAS, MIF, ICAM-1 and PAI-1 in serum of breast cancer patients undergoing neoadjuvant chemotherapy. , 2012, Anticancer research.

[65]  P. Stieber,et al.  Clinical use of circulating nucleosomes. , 2009, Critical reviews in clinical laboratory sciences.

[66]  M. Toi,et al.  Circulating soluble Fas concentration in breast cancer patients. , 1999, Clinical cancer research : an official journal of the American Association for Cancer Research.