Estimation of area- and mass-based leaf nitrogen contents of wheat and rice crops from water-removed spectra using continuous wavelet analysis

BackgroundThe visible and near infrared region has been widely used to estimate the leaf nitrogen (N) content based on the correlation of N with chlorophyll and deep absorption valleys of chlorophyll in this region. However, most absorption features related to N are located in the shortwave infrared (SWIR) region and the physical mechanism of leaf N estimation from fresh leaf reflectance spectra remains unclear. The use of SWIR region may help us reveal the underlying mechanism of casual relationships and better understand the spectral responses to N variation from fresh leaf reflectance spectra. This study combined continuous wavelet analysis (CWA) and water removal technique to improve the estimation of N content and leaf mass per area (LMA) by reducing the effect of water absorption and enhancing absorption signals in the SWIR region. The performance of the wavelet-based method was evaluated for estimating leaf N content and LMA of rice and wheat crops from fresh leaf reflectance spectra collected over a 2-year field experiment and compared with normalization difference (ND)-based spectral indices.ResultsThe LMA and area-based N content (Narea) exhibited better correlations with the determined wavelet features derived from the water-removed (WR) spectra (LMA: R2 = 0.71, Narea: R2 = 0.77) than those from the measured reflectance (MR) spectra (LMA: R2 = 0.62, Narea: R2 = 0.64). The wavelet features performed remarkably better than the optimized ND indices for the estimations of LMA and Narea with MR spectra or WR spectra. Based on the best estimations of LMA and Narea with wavelet features from WR spectra, the mass-based N content (Nmass) could be retrieved with a high accuracy (R2 = 0.82, RMSE = 0.32%) in the indirect way. This accuracy was higher than that for Nmass obtained in the direct use of a single wavelet feature (R2 = 0.68, RMSE = 0.42%).ConclusionsThe enhancement of absorption features in the SWIR region through the CWA applied to water-removed (WR) spectra was able to improve the spectroscopic estimation of leaf N content and LMA as compared to that obtained with the reflectance spectra of fresh leaves. The success in estimating LMA and N with this method would advance the spectroscopic estimations of grain quality parameters for staple crops and individual dry matter constituents for various vegetation types.

[1]  Josep Peñuelas,et al.  Evaluating Wheat Nitrogen Status with Canopy Reflectance Indices and Discriminant Analysis , 1995 .

[2]  F. M. Danson,et al.  Estimating live fuel moisture content from remotely sensed reflectance , 2004 .

[3]  F. Baret,et al.  PROSPECT: A model of leaf optical properties spectra , 1990 .

[4]  K. Soudani,et al.  Calibration and validation of hyperspectral indices for the estimation of broadleaved forest leaf chlorophyll content, leaf mass per area, leaf area index and leaf canopy biomass , 2008 .

[5]  J. Dungan,et al.  Estimating the foliar biochemical concentration of leaves with reflectance spectrometry: Testing the Kokaly and Clark methodologies , 2001 .

[6]  Weimin Ju,et al.  Limited Effects of Water Absorption on Reducing the Accuracy of Leaf Nitrogen Estimation , 2017, Remote. Sens..

[7]  J. R. Evans Photosynthesis and nitrogen relationships in leaves of C3 plants , 2004, Oecologia.

[8]  James S. Schepers,et al.  Measuring Chlorophyll Content in Corn Leaves with Differing Nitrogen Levels and Relative Water Content , 2019 .

[9]  Roberta E. Martin,et al.  PROSPECT-4 and 5: Advances in the leaf optical properties model separating photosynthetic pigments , 2008 .

[10]  George Alan Blackburn,et al.  Retrieval of chlorophyll concentration from leaf reflectance spectra using wavelet analysis. , 2008 .

[11]  John A. Gamon,et al.  Assessing leaf pigment content and activity with a reflectometer , 1999 .

[12]  J. Schjoerring,et al.  Reflectance measurement of canopy biomass and nitrogen status in wheat crops using normalized difference vegetation indices and partial least squares regression , 2003 .

[13]  Bin Liu,et al.  Active canopy sensing of winter wheat nitrogen status: An evaluation of two sensor systems , 2015, Comput. Electron. Agric..

[14]  E. Middleton Solar zenith angle effects on vegetation indices in tallgrass prairie , 1991 .

[15]  Xianjun Hao,et al.  Estimating dry matter content from spectral reflectance for green leaves of different species , 2011 .

[16]  B. Yoder,et al.  Predicting nitrogen and chlorophyll content and concentrations from reflectance spectra (400–2500 nm) at leaf and canopy scales , 1995 .

[17]  B. Turner,et al.  Estimating foliage nitrogen concentration from HYMAP data using continuum, removal analysis , 2004 .

[18]  Yoshio Inoue,et al.  The Impact of Sunlight Conditions on the Consistency of Vegetation Indices in Croplands - Effective Usage of Vegetation Indices from Continuous Ground-Based Spectral Measurements , 2015, Remote. Sens..

[19]  Haikuan Feng,et al.  Estimating leaf SPAD values of freeze-damaged winter wheat using continuous wavelet analysis. , 2016, Plant physiology and biochemistry : PPB.

[20]  M. Cho,et al.  A new technique for extracting the red edge position from hyperspectral data: The linear extrapolation method , 2006 .

[21]  B. Datt Remote Sensing of Chlorophyll a, Chlorophyll b, Chlorophyll a+b, and Total Carotenoid Content in Eucalyptus Leaves , 1998 .

[22]  Raymond F. Kokaly,et al.  Investigating a Physical Basis for Spectroscopic Estimates of Leaf Nitrogen Concentration , 2001 .

[23]  Jean-Baptiste Féret,et al.  Deriving leaf mass per area (LMA) from foliar reflectance across a variety of plant species using continuous wavelet analysis , 2014 .

[24]  Georg Bareth,et al.  Estimating leaf chlorophyll of barley at different growth stages using spectral indices to reduce soil background and canopy structure effects , 2014 .

[25]  Javier Pacheco-Labrador,et al.  Understanding the optical responses of leaf nitrogen in Mediterranean Holm oak (Quercus ilex) using field spectroscopy , 2014, Int. J. Appl. Earth Obs. Geoinformation.

[26]  D. Lamb,et al.  Estimating leaf nitrogen concentration in ryegrass ( Lolium spp.) pasture using the chlorophyll red-edge: Theoretical modelling and experimental observations , 2002 .

[27]  M. Herold,et al.  Influence of solar zenith angle on the enhanced vegetation index of a Guyanese rainforest , 2015 .

[28]  C. François,et al.  Towards universal broad leaf chlorophyll indices using PROSPECT simulated database and hyperspectral reflectance measurements , 2004 .

[29]  S. Ustin,et al.  Critique of stepwise multiple linear regression for the extraction of leaf biochemistry information from leaf reflectance data , 1996 .

[30]  F. Maupas,et al.  Retrieving LAI, chlorophyll and nitrogen contents in sugar beet crops from multi-angular optical remote sensing: Comparison of vegetation indices and PROSAIL inversion for field phenotyping , 2017 .

[31]  Xia Yao,et al.  Monitoring leaf nitrogen status with hyperspectral reflectance in wheat , 2008 .

[32]  M. Wopereis,et al.  Crops that feed the world 7: Rice , 2012, Food Security.

[33]  Pierre Roumet,et al.  Assessing leaf nitrogen content and leaf mass per unit area of wheat in the field throughout plant cycle with a portable spectrometer , 2013 .

[34]  David Riaño,et al.  Detecting diurnal and seasonal variation in canopy water content of nut tree orchards from airborne imaging spectroscopy data using continuous wavelet analysis , 2014 .

[35]  C. Daughtry,et al.  Estimating dry matter content of fresh leaves from the residuals between leaf and water reflectance , 2011 .

[36]  A. Gitelson,et al.  Simple and robust methods for remote sensing of canopy chlorophyll content: a comparative analysis of hyperspectral data for different types of vegetation. , 2016, Plant, cell & environment.

[37]  John R. Miller,et al.  Integrated narrow-band vegetation indices for prediction of crop chlorophyll content for application to precision agriculture , 2002 .

[38]  Bruno Mary,et al.  Elaboration of a nitrogen nutrition indicator for winter wheat based on leaf area index and chlorophyll content for making nitrogen recommendations , 2007 .

[39]  Clement Atzberger,et al.  Estimation of vegetation LAI from hyperspectral reflectance data: Effects of soil type and plant architecture , 2008, Int. J. Appl. Earth Obs. Geoinformation.

[40]  Clement Atzberger,et al.  Retrieval of chlorophyll and nitrogen in Norway spruce (Picea abies L. Karst.) using imaging spectroscopy , 2010, Int. J. Appl. Earth Obs. Geoinformation.

[41]  Benoit Rivard,et al.  Continuous wavelets for the improved use of spectral libraries and hyperspectral data , 2008 .

[42]  K. Olaf Niemann,et al.  Addressing the Effects of Canopy Structure on the Remote Sensing of Foliar Chemistry of a 3-Dimensional, Radiometrically Porous Surface , 2012, IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing.

[43]  Li He,et al.  Improved remote sensing of leaf nitrogen concentration in winter wheat using multi-angular hyperspectral data , 2016 .

[44]  S. Ollinger,et al.  Examining spectral reflectance features related to foliar nitrogen in forests: Implications for broad-scale nitrogen mapping , 2016 .

[45]  Philip Lewis,et al.  Hyperspectral remote sensing of foliar nitrogen content , 2012, Proceedings of the National Academy of Sciences.

[46]  S. Tarantola,et al.  Designing a spectral index to estimate vegetation water content from remote sensing data: Part 1 - Theoretical approach , 2002 .

[47]  Melinda Smale,et al.  Crops that feed the world 10. Past successes and future challenges to the role played by wheat in global food security , 2013, Food Security.

[48]  Andrew K. Skidmore,et al.  Savanna grass nitrogen to phosphorous ratio estimation using field spectroscopy and the potential for estimation with imaging spectroscopy , 2013, Int. J. Appl. Earth Obs. Geoinformation.

[49]  Weixing Cao,et al.  PROCWT: Coupling PROSPECT with continuous wavelet transform to improve the retrieval of foliar chemistry from leaf bidirectional reflectance spectra , 2018 .

[50]  Hengbiao Zheng,et al.  WREP: A wavelet-based technique for extracting the red edge position from reflectance spectra for estimating leaf and canopy chlorophyll contents of cereal crops , 2017 .

[51]  J. A. Schell,et al.  Monitoring vegetation systems in the great plains with ERTS , 1973 .

[52]  Anatoly A. Gitelson,et al.  Remote estimation of nitrogen and chlorophyll contents in maize at leaf and canopy levels , 2013, Int. J. Appl. Earth Obs. Geoinformation.

[53]  Lei Wang,et al.  Estimating canopy leaf area index in the late stages of wheat growth using continuous wavelet transform , 2014 .

[54]  Guofeng Wu,et al.  Estimating leaf nitrogen concentration in heterogeneous crop plants from hyperspectral reflectance , 2015 .

[55]  Sean C. Thomas,et al.  The worldwide leaf economics spectrum , 2004, Nature.

[56]  Fuan Tsai,et al.  Derivative Analysis of Hyperspectral Data , 1998 .

[57]  Kenji Omasa,et al.  Estimating rice chlorophyll content and leaf nitrogen concentration with a digital still color camera under natural light , 2014, Plant Methods.

[58]  A. Goetz,et al.  Extraction of dry leaf spectral features from reflectance spectra of green vegetation , 1994 .

[59]  A. Ramoelo,et al.  Water-removed spectra increase the retrieval accuracy when estimating savanna grass nitrogen and phosphorus concentrations , 2011 .

[60]  R. Clark,et al.  Spectroscopic Determination of Leaf Biochemistry Using Band-Depth Analysis of Absorption Features and Stepwise Multiple Linear Regression , 1999 .

[61]  K. Hikosaka,et al.  Nitrogen partitioning among photosynthetic components and its consequence in sun and shade plants , 1996 .

[62]  B. Rivard,et al.  Spectroscopic determination of leaf water content using continuous wavelet analysis , 2011 .

[63]  J. Six,et al.  Efficiency of Fertilizer Nitrogen in Cereal Production: Retrospects and Prospects , 2005 .

[64]  P. Curran Remote sensing of foliar chemistry , 1989 .