The recognition of protein structure and function from sequence: adding value to genome data.
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T L Blundell | N Srinivasan | A C May | R Sowdhamini | T. Blundell | A. C. May | H. Wako | M. S. Johnson | S. Rufino | Z. Y. Zhu | R. Sowdhamini | M. A. Rodionov | N. Srinivasan | S D Rufino | H Wako | M S Johnson | Z Y Zhu | M A Rodionov | M. S. Johnson
[1] John P. Overington,et al. Environment‐specific amino acid substitution tables: Tertiary templates and prediction of protein folds , 1992, Protein science : a publication of the Protein Society.
[2] T. Blundell,et al. Knowledge based modelling of homologous proteins, Part I: Three-dimensional frameworks derived from the simultaneous superposition of multiple structures. , 1987, Protein engineering.
[3] M. Sippl. Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins. , 1990, Journal of molecular biology.
[4] Janet M. Thornton,et al. Lessons from analyzing protein structures , 1992 .
[5] T L Blundell,et al. Use of amino acid environment-dependent substitution tables and conformational propensities in structure prediction from aligned sequences of homologous proteins. II. Secondary structures. , 1994, Journal of molecular biology.
[6] S. Bryant,et al. New Programs for Protein Tertiary Structure Prediction , 1993, Bio/Technology.
[7] G J Williams,et al. The Protein Data Bank: a computer-based archival file for macromolecular structures. , 1977, Journal of molecular biology.
[8] K. D. Hardman,et al. Structure of concanavalin A at 2.4-A resolution. , 1972, Biochemistry.
[9] T. A. Jones,et al. Using known substructures in protein model building and crystallography. , 1986, The EMBO journal.
[10] F. L. Suddath,et al. The crystal structure of pea lectin at 3.0-A resolution. , 1986, The Journal of biological chemistry.
[11] C. Chothia,et al. Protein architecture: New superfamilies , 1992, Current Biology.
[12] S V Evans,et al. SETOR: hardware-lighted three-dimensional solid model representations of macromolecules. , 1993, Journal of molecular graphics.
[13] G. Louie. Porphobilinogen deaminase and its structural similarity to the bidomain binding proteins , 1993 .
[14] T. Blundell,et al. Topological similarities in TGF-beta 2, PDGF-BB and NGF define a superfamily of polypeptide growth factors. , 1993, Structure.
[15] T L Blundell,et al. An evaluation of the performance of an automated procedure for comparative modelling of protein tertiary structure. , 1993, Protein engineering.
[16] T. Blundell,et al. Comparative protein modelling by satisfaction of spatial restraints. , 1993, Journal of molecular biology.
[17] David Eisenberg,et al. Inverted protein structure prediction , 1993 .
[18] G J Williams,et al. The Protein Data Bank: a computer-based archival file for macromolecular structures. , 1978, Archives of biochemistry and biophysics.
[19] John P. Overington,et al. Tertiary structural constraints on protein evolutionary diversity: templates, key residues and structure prediction , 1990, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[20] Nicholas Short. The changing shape of structure , 1993, Nature.
[21] R. Doolittle. Similar amino acid sequences: chance or common ancestry? , 1981, Science.
[22] John P. Overington,et al. Molecular recognition in protein families: a database of aligned three-dimensional structures of related proteins. , 1993, Biochemical Society transactions.
[23] P N Goodfellow,et al. DNA binding activity of recombinant SRY from normal males and XY females. , 1992, Science.
[24] U. Heinemann,et al. Molecular and active-site structure of a Bacillus 1,3-1,4-beta-glucanase. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[25] Karl D. Hardman,et al. Structure of concanavalin A at 2.4-Ang resolution , 1972 .
[26] T. L. Blundell,et al. Knowledge-based prediction of protein structures and the design of novel molecules , 1987, Nature.
[27] T L Blundell,et al. A variable gap penalty function and feature weights for protein 3-D structure comparisons. , 1992, Protein engineering.
[28] T. Blundell,et al. Catching a common fold , 1993, Protein science : a publication of the Protein Society.
[29] W. Hendrickson,et al. A structural superfamily of growth factors containing a cystine knot motif , 1993, Cell.
[30] B. Dujon,et al. The complete DNA sequence of yeast chromosome III , 1992, Nature.
[31] T L Blundell,et al. Packing of secondary structural elements in proteins. Analysis and prediction of inter-helix distances. , 1993, Journal of molecular biology.
[32] D. Davies,et al. Crystal structure of transforming growth factor-beta 2: an unusual fold for the superfamily. , 1992, Science.
[33] John Maddox. Ever-longer sequences in prospect , 1992, Nature.
[34] T. Blundell,et al. Comparisons of the sequences, 3-D structures and mechanisms of pepsin-like and retroviral aspartic proteinases. , 1991, Advances in experimental medicine and biology.
[35] Tom L. Blundell,et al. New protein fold revealed by a 2.3-Å resolution crystal structure of nerve growth factor , 1991, Nature.
[36] A C May,et al. Protein structure comparisons using a combination of a genetic algorithm, dynamic programming and least-squares minimization. , 1994, Protein engineering.
[37] J Bajorath,et al. Knowledge‐based model building of proteins: Concepts and examples , 1993, Protein science : a publication of the Protein Society.
[38] T L Blundell,et al. Knowledge based modelling of homologous proteins, Part II: Rules for the conformations of substituted sidechains. , 1987, Protein engineering.
[39] John P. Overington,et al. A structural basis for sequence comparisons. An evaluation of scoring methodologies. , 1993, Journal of molecular biology.
[40] T. Blundell,et al. Structure of pentameric human serum amyloid P component , 1994, Nature.
[41] Chris Sander,et al. What's in a genome? , 1992, Nature.
[42] T L Blundell,et al. Comparison of solvent-inaccessible cores of homologous proteins: definitions useful for protein modelling. , 1987, Protein engineering.
[43] M. Grütter,et al. An unusual feature revealed by the crystal structure at 2.2 Å resolution of human transforming growth fact or-β2 , 1992, Nature.
[44] John P. Overington,et al. Knowledge‐based protein modelling and design , 1988 .
[45] S. B. Needleman,et al. A general method applicable to the search for similarities in the amino acid sequence of two proteins. , 1970, Journal of molecular biology.
[46] T. Blundell,et al. Knowledge-based protein modeling. , 1994, Critical reviews in biochemistry and molecular biology.
[47] T. Blundell,et al. Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming. , 1990, Journal of molecular biology.
[48] John P. Overington,et al. Alignment and searching for common protein folds using a data bank of structural templates. , 1993, Journal of molecular biology.
[49] T L Blundell,et al. Use of amino acid environment-dependent substitution tables and conformational propensities in structure prediction from aligned sequences of homologous proteins. I. Solvent accessibility classes. , 1994, Journal of molecular biology.
[50] John P. Overington. Comparison of three-dimensional structures of homologous proteins , 1992, Current Biology.
[51] Christine A. Orengo,et al. A Review of Methods for Protein Structure Comparison , 1992 .
[52] William R. Taylor,et al. A structural model for the retroviral proteases , 1987, Nature.
[53] Mark S. Johnson. Comparison of protein structures , 1991 .
[54] John P. Overington,et al. From comparisons of protein sequences and structures to protein modelling and design. , 1990, Trends in biochemical sciences.