International Journal on Digital Libraries manuscript No. (will be inserted by the editor) A Digital Library Framework for Biodiversity Information Systems

Biodiversity Information Systems (BISs) involve all kinds of heterogeneous data, which include ecological and geographical features. However, available information systems offer very limited support for managing these kinds of data in an integrated fashion. Furthermore, such systems do not fully support image content (e.g., photos of landscapes or living organisms) management, a requirement of many BIS end-users. In order to meet their needs, these users—e.g., biologists, environmental experts—often have to alternate between separate biodiversity and image information systems to combine information extracted from them. This hampers the addition of new data sources, as well as cooperation among scientists. The approach provided in this paper to meet these issues is based on taking advantage of advances in digital library innovations to integrate networked collections of heterogeneous data. It focuses on creating the basis for a next-generation BIS, combining new techniques of content-based image retrieval and database query processing mechanisms. This paper shows the use of this component-based architecture to support the creation of two tailored BIS systems dealing with fish specimen identification using search techniques. Experimental results suggest that this new approach improves the effectiveness of the fish identification process, when compared to the traditional key-based method.

[1]  A FoxEdward,et al.  A digital library framework for biodiversity information systems , 2006 .

[2]  J. Alfredo Sánchez,et al.  Agora: Enhancing Group Awareness and Collaboration in Floristic Digital Libraries , 1998, CRIWG.

[3]  Herbert Van de Sompel,et al.  The open archives initiative: building a low-barrier interoperability framework , 2001, JCDL '01.

[4]  L. Costa,et al.  Shape description by image foresting transform , 2002, 2002 14th International Conference on Digital Signal Processing Proceedings. DSP 2002 (Cat. No.02TH8628).

[5]  Antoine Geissbühler,et al.  A Review of Content{Based Image Retrieval Systems in Medical Applications { Clinical Bene(cid:12)ts and Future Directions , 2022 .

[6]  Christian Böhm,et al.  Searching in high-dimensional spaces: Index structures for improving the performance of multimedia databases , 2001, CSUR.

[7]  William I. Grosky,et al.  Narrowing the semantic gap - improved text-based web document retrieval using visual features , 2002, IEEE Trans. Multim..

[8]  Mario A. Nascimento,et al.  A compact and efficient image retrieval approach based on border/interior pixel classification , 2002, CIKM '02.

[9]  Bernhard Seeger,et al.  A Status Report on XXL - a Software Infrastructure for Efficient Query Processing , 2003, IEEE Data Eng. Bull..

[10]  Herng-Yow Chen,et al.  A digital museum of Taiwanese butterflies , 2000, DL '00.

[11]  Alberto Del Bimbo,et al.  Visual information retrieval , 1999 .

[12]  James Frew,et al.  The ADEPT digital library architecture , 2002, JCDL '02.

[13]  Michael G. Christel,et al.  Interactive maps for a digital video library , 1999, Proceedings IEEE International Conference on Multimedia Computing and Systems.

[14]  Kyuseok Shim,et al.  WALRUS: A Similarity Retrieval Algorithm for Image Databases , 2004, IEEE Trans. Knowl. Data Eng..

[15]  Michael J. Swain,et al.  Color indexing , 1991, International Journal of Computer Vision.

[16]  Pavel Zezula,et al.  M-tree: An Efficient Access Method for Similarity Search in Metric Spaces , 1997, VLDB.

[17]  Edward A. Fox,et al.  MARIAN: Flexible Interoperability for Federated Digital Libraries , 2001, ECDL.

[18]  Luciano da Fontoura Costa,et al.  A graph-based approach for multiscale shape analysis , 2004, Pattern Recognit..

[19]  Thomas S. Huang,et al.  Unifying Keywords and Visual Contents in Image Retrieval , 2002, IEEE Multim..

[20]  E.A. Fox,et al.  ETANA-DL: managing complex information applications - an archaeology digital library , 2004, Proceedings of the 2004 Joint ACM/IEEE Conference on Digital Libraries, 2004..

[21]  Kevin Chen-Chuan Chang,et al.  Interoperability for digital libraries worldwide , 1998, CACM.

[22]  Bernhard Seeger,et al.  XXL - A Library Approach to Supporting Efficient Implementations of Advanced Database Queries , 2001, VLDB.

[23]  Ingemar J. Cox,et al.  The Bayesian image retrieval system, PicHunter: theory, implementation, and psychophysical experiments , 2000, IEEE Trans. Image Process..

[24]  Miroslaw Bober,et al.  MPEG-7 visual shape descriptors , 2001, IEEE Trans. Circuits Syst. Video Technol..

[25]  Thomas Sikora,et al.  The MPEG-7 visual standard for content description-an overview , 2001, IEEE Trans. Circuits Syst. Video Technol..

[26]  Benjamin B. Kimia,et al.  Curves vs. skeletons in object recognition , 2005, Signal Process..

[27]  H. K. Huang Multimedia Applications In Health Care , 1997, IEEE MultiMedia.

[28]  Gail McMillan,et al.  Open Archives Initiative , 2000 .

[29]  Ricardo da Silva Torres,et al.  Visual structures for image browsing , 2003, CIKM '03.

[30]  Dragutin Petkovic,et al.  Query by Image and Video Content: The QBIC System , 1995, Computer.

[31]  Sadegh Abbasi,et al.  Shape similarity retrieval under affine transforms , 2002, Pattern Recognit..

[32]  T. Smith A digital library for geographically referenced materials , 1996, Computer.

[33]  Paul H. Lewis,et al.  An integrated content and metadata based retrieval system for art , 2004, IEEE Transactions on Image Processing.

[34]  Edward A. Fox,et al.  Open digital libraries , 2002 .

[35]  Amarnath Gupta,et al.  Virage image search engine: an open framework for image management , 1996, Electronic Imaging.

[36]  Kien A. Hua,et al.  Image Retrieval Based on Regions of Interest , 2003, IEEE Trans. Knowl. Data Eng..

[37]  Michael S. Lew,et al.  Principles of Visual Information Retrieval , 2001, Advances in Pattern Recognition.

[38]  Shih-Fu Chang,et al.  Overview of the MPEG-7 standard , 2001, IEEE Trans. Circuits Syst. Video Technol..

[39]  Ramesh C. Jain,et al.  A survey on the use of pattern recognition methods for abstraction, indexing and retrieval of images and video , 2002, Pattern Recognit..

[40]  J. Alfredo Sánchez,et al.  An agent-based approach to the construction of floristic digital libraries , 1998, DL '98.

[41]  B. S. Manjunath,et al.  Color and texture descriptors , 2001, IEEE Trans. Circuits Syst. Video Technol..

[42]  Clement T. Yu,et al.  Techniques and Systems for Image and Video Retrieval , 1999, IEEE Trans. Knowl. Data Eng..

[43]  Edward A. Fox,et al.  The Open Archives Initiative , 2001 .

[44]  Wenyin Liu,et al.  Joint semantics and feature based image retrieval using relevance feedback , 2003, IEEE Trans. Multim..

[45]  Vittorio Castelli,et al.  Image Databases: Search and Retrieval of Digital Imagery , 2002 .

[46]  Michael Stonebraker,et al.  Chabot: Retrieval from a Relational Database of Images , 1995, Computer.

[47]  Kyuseok Shim,et al.  WALRUS: a similarity retrieval algorithm for image databases , 1999, IEEE Transactions on Knowledge and Data Engineering.

[48]  Marco La Cascia,et al.  Unifying Textual and Visual Cues for Content-Based Image Retrieval on the World Wide Web , 1999, Comput. Vis. Image Underst..

[49]  N. Burkhead,et al.  Freshwater Fishes of Virginia , 1994 .

[50]  Jitendra Malik,et al.  Blobworld: Image Segmentation Using Expectation-Maximization and Its Application to Image Querying , 2002, IEEE Trans. Pattern Anal. Mach. Intell..

[51]  Marcel Worring,et al.  Content-Based Image Retrieval at the End of the Early Years , 2000, IEEE Trans. Pattern Anal. Mach. Intell..

[52]  Jun Wang,et al.  Java MARIAN: From an OPAC to a Modern Digital Library System , 2002, SPIRE.

[53]  Guojun Lu,et al.  Review of shape representation and description techniques , 2004, Pattern Recognit..

[54]  Andrea Kutics,et al.  Combining words and object-based visual features in image retrieval , 2003, 12th International Conference on Image Analysis and Processing, 2003.Proceedings..

[55]  Fatos T. Yarman-Vural,et al.  BAS: a perceptual shape descriptor based on the beam angle statistics , 2003, Pattern Recognit. Lett..

[56]  Bin Zhu,et al.  Creating a large-scale content-based airphoto image digital library , 2000, IEEE Trans. Image Process..

[57]  Shih-Fu Chang,et al.  Image Retrieval: Current Techniques, Promising Directions, and Open Issues , 1999, J. Vis. Commun. Image Represent..

[58]  Tomaso A. Poggio,et al.  Image Representations and Feature Selection for Multimedia Database Search , 2003, IEEE Trans. Knowl. Data Eng..

[59]  Atsuo Yoshitaka,et al.  A Survey on Content-Based Retrieval for Multimedia Databases , 1999, IEEE Trans. Knowl. Data Eng..

[60]  Edward A. Fox,et al.  Building digital libraries from simple building blocks , 2003, Online Inf. Rev..

[61]  Luciano da Fontoura Costa,et al.  Effective image retrieval by shape saliences , 2003, 16th Brazilian Symposium on Computer Graphics and Image Processing (SIBGRAPI 2003).

[62]  J. Alfredo Sánchez,et al.  Mutant: agents as guides for multiple taxonomies in the floristic digital library , 1999, DL '99.

[63]  Nikolas P. Galatsanos,et al.  A similarity learning approach to content-based image retrieval: application to digital mammography , 2004, IEEE Transactions on Medical Imaging.