MimoPro: a more efficient Web-based tool for epitope prediction using phage display libraries
暂无分享,去创建一个
Yang Lu | Wen Han Chen | Zhi Qiang Ma | William W. Guo | Ping Ping Sun | Yan Xin Huang | P. Sun | Y. Huang | W. Chen | Yang Lu | Zhi Qiang Ma
[1] Dominique Piquer,et al. Peptide decoys selected by phage display block in vitro and in vivo activity of a human anti-FVIII inhibitor. , 2003, Blood.
[2] Violaine Moreau,et al. Discontinuous epitope prediction based on mimotope analysis , 2006, Bioinform..
[3] Ruth Nussinov,et al. SiteLight: Binding‐site prediction using phage display libraries , 2003, Protein science : a publication of the Protein Society.
[4] Itay Mayrose,et al. Epitopia: a web-server for predicting B-cell epitopes , 2009, BMC Bioinformatics.
[5] Jonathan M Gershoni,et al. The mapping and reconstitution of a conformational discontinuous B-cell epitope of HIV-1. , 2003, Journal of molecular biology.
[6] A. Shrake,et al. Environment and exposure to solvent of protein atoms. Lysozyme and insulin. , 1973, Journal of molecular biology.
[7] Jean-Luc Pellequer,et al. BEPITOPE: predicting the location of continuous epitopes and patterns in proteins , 2003, Journal of molecular recognition : JMR.
[8] Jian Huang,et al. CED: a conformational epitope database , 2006, BMC Immunology.
[9] A. Alix,et al. Predictive estimation of protein linear epitopes by using the program PEOPLE. , 1999, Vaccine.
[10] Clifford Stein,et al. Introduction to Algorithms, 2nd edition. , 2001 .
[11] B. Lee,et al. The interpretation of protein structures: estimation of static accessibility. , 1971, Journal of molecular biology.
[12] Itay Mayrose,et al. Stepwise prediction of conformational discontinuous B‐cell epitopes using the Mapitope algorithm , 2007, Proteins.
[13] Feng-Biao Guo,et al. SAROTUP: Scanner and Reporter of Target-Unrelated Peptides , 2010, Journal of biomedicine & biotechnology.
[14] O. Lund,et al. Prediction of residues in discontinuous B‐cell epitopes using protein 3D structures , 2006, Protein science : a publication of the Protein Society.
[15] Ronald L. Rivest,et al. Introduction to Algorithms , 1990 .
[16] Markus Klinger,et al. Generation of Peptide Mimics of the Epitope Recognized by Trastuzumab on the Oncogenic Protein Her-2/neu1 , 2004, The Journal of Immunology.
[17] K. R. Woods,et al. Prediction of protein antigenic determinants from amino acid sequences. , 1981, Proceedings of the National Academy of Sciences of the United States of America.
[18] Di Wu,et al. SEPPA: a computational server for spatial epitope prediction of protein antigens , 2009, Nucleic Acids Res..
[19] Nimrod D. Rubinstein,et al. Epitope mapping using combinatorial phage-display libraries: a graph-based algorithm , 2006, Nucleic acids research.
[20] ANDREAS SCHREIBER,et al. 3D‐Epitope‐Explorer (3DEX): Localization of conformational epitopes within three‐dimensional structures of proteins , 2005, J. Comput. Chem..
[21] Ailsa H. Land,et al. An Automatic Method of Solving Discrete Programming Problems , 1960 .
[22] R M Thomas,et al. Analysis of antibody A6 binding to the extracellular interferon gamma receptor alpha-chain by alanine-scanning mutagenesis and random mutagenesis with phage display. , 2000, Biochemistry.
[23] M. L. Connolly. Solvent-accessible surfaces of proteins and nucleic acids. , 1983, Science.
[24] A. D. de Vos,et al. Selection and analysis of an optimized anti-VEGF antibody: crystal structure of an affinity-matured Fab in complex with antigen. , 1999, Journal of molecular biology.
[25] I. Takenaka,et al. Hsc70-binding Peptides Selected from a Phage Display Peptide Library that Resemble Organellar Targeting Sequences (*) , 1995, The Journal of Biological Chemistry.
[26] Shandar Ahmad,et al. ASAView: Database and tool for solvent accessibility representation in proteins , 2003, BMC Bioinformatics.
[27] Avner Schlessinger,et al. Towards a consensus on datasets and evaluation metrics for developing B‐cell epitope prediction tools , 2007, Journal of molecular recognition : JMR.
[28] Yuxin Li,et al. Pep-3D-Search: a method for B-cell epitope prediction based on mimotope analysis , 2008, BMC Bioinformatics.
[29] John A. Robinson,et al. Analysis of Antibody A6 Binding to the Extracellular Interferon γ Receptor α-Chain by Alanine-Scanning Mutagenesis and Random Mutagenesis with Phage Display† , 2000 .
[30] R. Rickles,et al. Identification of Src, Fyn, Lyn, PI3K and Abl SH3 domain ligands using phage display libraries. , 1994, The EMBO journal.
[31] R. Hodges,et al. New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: correlation of predicted surface residues with antigenicity and X-ray-derived accessible sites. , 1986, Biochemistry.
[32] J. Thornton,et al. Continuous and discontinuous protein antigenic determinants , 1986, Nature.
[33] David S. Johnson,et al. Computers and Intractability: A Guide to the Theory of NP-Completeness , 1978 .
[34] BMC Bioinformatics , 2005 .
[35] M. Diamond,et al. A novel computer algorithm improves antibody epitope prediction using affinity-selected mimotopes: a case study using monoclonal antibodies against the West Nile virus E protein. , 2008, Molecular immunology.
[36] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[37] Urmila Kulkarni-Kale,et al. CEP: a conformational epitope prediction server , 2005, Nucleic Acids Res..
[38] Marc De Maeyer,et al. A Consensus Tetrapeptide Selected by Phage Display Adopts the Conformation of a Dominant Discontinuous Epitope of a Monoclonal Anti-VWF Antibody That Inhibits the von Willebrand Factor-Collagen Interaction* , 2003, Journal of Biological Chemistry.
[39] 室 章治郎. Michael R.Garey/David S.Johnson 著, "COMPUTERS AND INTRACTABILITY A guide to the Theory of NP-Completeness", FREEMAN, A5判変形判, 338+xii, \5,217, 1979 , 1980 .
[40] Mam Riess Jones. Color Coding , 1962, Human factors.
[41] Feng-Biao Guo,et al. MimoDB: a New Repository for Mimotope Data Derived from Phage Display Technology , 2010, Molecules.
[42] Jaime Prilusky,et al. SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment , 2005, Nucleic Acids Res..
[43] S J Rodda,et al. A priori delineation of a peptide which mimics a discontinuous antigenic determinant. , 1986, Molecular immunology.
[44] Oleg V. Tsodikov,et al. Novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature , 2002, J. Comput. Chem..
[45] Werner Braun,et al. Bioinformatics and Biology Insights , 2022 .
[46] Bonnie Kirkpatrick,et al. A New Method for Mapping Discontinuous Antibody Epitopes to Reveal Structural Features of Proteins , 2003, J. Comput. Biol..
[47] Minoru Kanehisa,et al. MIMOX: a web tool for phage display based epitope mapping , 2006, BMC Bioinformatics.
[48] Christoph C Zielinski,et al. Matching of trastuzumab (Herceptin) epitope mimics onto the surface of Her-2/neu--a new method of epitope definition. , 2005, Molecular immunology.
[49] Bernd Mayer,et al. Machine learning approaches for prediction of linear B‐cell epitopes on proteins , 2006, Journal of molecular recognition : JMR.
[50] J L Sussman,et al. Protein Data Bank (PDB): database of three-dimensional structural information of biological macromolecules. , 1998, Acta crystallographica. Section D, Biological crystallography.
[51] Thomas Stützle,et al. Ant Colony Optimization , 2009, EMO.