Alternate states dominate the bacterial endophyte community of a tropical tree

[1]  Meng Zu,et al.  Composition and diversity of bacterial communities in the rhizosphere of the Chinese medicinal herb Dendrobium , 2021, BMC Plant Biology.

[2]  Fatang Jiang,et al.  Bacillus species as potential biocontrol agents against citrus diseases , 2020 .

[3]  J. van Staden,et al.  The role of endophytes in secondary metabolites accumulation in medicinal plants under abiotic stress , 2020 .

[4]  A. Chakraborty,et al.  Plant microbiome–an account of the factors that shape community composition and diversity , 2020 .

[5]  M. Ongena,et al.  Bacillus Responses to Plant-Associated Fungal and Bacterial Communities , 2020, Frontiers in Microbiology.

[6]  A. Abdulrahaman,et al.  Surface sterilization of Ocimum seeds and tissues with biosynthesized nanosilver and its effects on callus induction , 2020, IOP Conference Series: Materials Science and Engineering.

[7]  H. Kharkwal,et al.  Therapeutic agents from endophytes harbored in Asian medicinal plants , 2020, Phytochemistry Reviews.

[8]  Zhongbo Yu,et al.  Contrasting Patterns in Diversity and Community Assembly of Phragmites australis Root-Associated Bacterial Communities from Different Seasons , 2020, Applied and Environmental Microbiology.

[9]  C. Rosa,et al.  Biotechnological applications of the medicinal plant Pseudobrickellia brasiliensis and its isolated endophytic bacteria , 2020, Journal of applied microbiology.

[10]  Yongmei Li,et al.  Core endophyte communities of different citrus varieties from citrus growing regions in China , 2020, Scientific Reports.

[11]  Ajar Nath Yadav,et al.  Endophytic Microbes from Diverse Wheat Genotypes and Their Potential Biotechnological Applications in Plant Growth Promotion and Nutrient Uptake , 2020, Proceedings of the National Academy of Sciences, India Section B: Biological Sciences.

[12]  M. L. Verma,et al.  Bioprospecting and Biotechnological Applications of Microbial Endophytes , 2020 .

[13]  Ajay Kumar,et al.  Entry, colonization, and distribution of endophytic microorganisms in plants , 2020 .

[14]  A. Wolińska,et al.  Agricultural and Other Biotechnological Applications Resulting from Trophic Plant-Endophyte Interactions , 2019, Agronomy.

[15]  A. Saxena,et al.  Bacillus species in soil as a natural resource for plant health and nutrition , 2019, Journal of applied microbiology.

[16]  C. Dong,et al.  Bacterial communities in the rhizosphere, phyllosphere and endosphere of tomato plants , 2019, PloS one.

[17]  S. A. Bakeri.  SOIL BACTERIAL BIODIVERSITY IN DEVELOPMENT OF SECONDARY LOGGEDOVER FOREST TO OIL PALM PLANTATION IN MINERAL SOIL OF BELAGA, SARAWAK , 2019, Journal of Oil Palm Research.

[18]  Xiyan Yang,et al.  Drought tolerance improvement in plants: an endophytic bacterial approach , 2019, Applied Microbiology and Biotechnology.

[19]  R. Rooney,et al.  Stochastic and deterministic processes drive wetland community assembly across a gradient of environmental filtering , 2019, Oikos.

[20]  G. Ravikanth,et al.  How and why do endophytes produce plant secondary metabolites? , 2019, Symbiosis.

[21]  F. Sarmadian,et al.  Effect of rhizospheric and endophytic bacteria with multiple plant growth promoting traits on wheat growth , 2019, Environmental Science and Pollution Research.

[22]  S. Lindow,et al.  Successive passaging of a plant-associated microbiome reveals robust habitat and host genotype-dependent selection , 2019, Proceedings of the National Academy of Sciences.

[23]  L. Hou,et al.  Soil microbial diversity during 30 years of grassland restoration on the Loess Plateau, China: Tight linkages with plant diversity , 2019, Land Degradation & Development.

[24]  B. Raymond,et al.  Rhizobacterial Community Assembly Patterns Vary Between Crop Species , 2019, Front. Microbiol..

[25]  C. Bragard,et al.  Overview of the Antimicrobial Compounds Produced by Members of the Bacillus subtilis Group , 2019, Front. Microbiol..

[26]  Shomaila Sikandar,et al.  Plant beneficial endophytic bacteria: Mechanisms, diversity, host range and genetic determinants. , 2019, Microbiological research.

[27]  Jing Yang,et al.  Insights into Endophytic Bacterial Community Structures of Seeds Among Various Oryza sativa L. Rice Genotypes , 2018, Journal of Plant Growth Regulation.

[28]  K. Gademann,et al.  Leaf nodule symbiosis: function and transmission of obligate bacterial endophytes. , 2018, Current opinion in plant biology.

[29]  M. V. de Queiroz,et al.  A look into a multifunctional toolbox: endophytic Bacillus species provide broad and underexploited benefits for plants , 2018, World Journal of Microbiology and Biotechnology.

[30]  M. Soares,et al.  Diversity of cultivable bacterial endophytes in Paullinia cupana and their potential for plant growth promotion and phytopathogen control. , 2018, Microbiological research.

[31]  C. Pieterse,et al.  Inner Plant Values: Diversity, Colonization and Benefits from Endophytic Bacteria , 2017, Front. Microbiol..

[32]  Jackie E. Shay,et al.  Transmission of Bacterial Endophytes , 2017, Microorganisms.

[33]  Jonathan M Adams,et al.  Draft genome sequence of an endophytic bacterium, Paenibacillus tyrfis strain SUK123, isolated from Santiria apiculata stem , 2017, Genomics data.

[34]  Jonathan M Adams,et al.  Extensive Overlap of Tropical Rainforest Bacterial Endophytes between Soil, Plant Parts, and Plant Species , 2017, Microbial Ecology.

[35]  D. Cowan,et al.  Plants of the fynbos biome harbour host species-specific bacterial communities. , 2016, FEMS microbiology letters.

[36]  C. Messier,et al.  Host species identity, site and time drive temperate tree phyllosphere bacterial community structure , 2016, Microbiome.

[37]  W. Boerjan,et al.  Performance of 16s rDNA Primer Pairs in the Study of Rhizosphere and Endosphere Bacterial Microbiomes in Metabarcoding Studies , 2016, Front. Microbiol..

[38]  Linghao Li,et al.  Environmental changes affect the assembly of soil bacterial community primarily by mediating stochastic processes , 2016, Global change biology.

[39]  J. Stegen,et al.  Relative Roles of Deterministic and Stochastic Processes in Driving the Vertical Distribution of Bacterial Communities in a Permafrost Core from the Qinghai-Tibet Plateau, China , 2015, PloS one.

[40]  P. Herron,et al.  In vivo antimalarial activity of the endophytic actinobacteria, Streptomyces SUK 10 , 2015, Journal of Microbiology.

[41]  Ke-Qin Zhang,et al.  Metagenomic insights into communities, functions of endophytes, and their associates with infection by root-knot nematode, Meloidogyne incognita, in tomato roots , 2015, Scientific Reports.

[42]  Junghoon Lee,et al.  Effects of Functionalized and Raw Multi-Walled Carbon Nanotubes on Soil Bacterial Community Composition , 2015, PloS one.

[43]  S. Riyaz-Ul-Hassan,et al.  Plant-endophyte symbiosis, an ecological perspective , 2015, Applied Microbiology and Biotechnology.

[44]  J. V. van Elsas,et al.  Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession , 2015, Proceedings of the National Academy of Sciences.

[45]  Sicuia Oana Alina,et al.  Biodiversity of Bacillus subtilis group and beneficial traits of Bacillus species useful in plant protection , 2015 .

[46]  M. Tadych,et al.  Occurrence of Bacillus amyloliquefaciens as a systemic endophyte of vanilla orchids , 2014, Microscopy research and technique.

[47]  Quan Liu,et al.  Characterization of rhizosphere and endophytic bacterial communities from leaves, stems and roots of medicinal Stellera chamaejasme L. , 2014, Systematic and applied microbiology.

[48]  S. Bhore,et al.  Culturable bacterial endophytes isolated from Mangrove tree (Rhizophora apiculata Blume) enhance seedling growth in Rice , 2014, Journal of natural science, biology, and medicine.

[49]  F. Trognitz,et al.  Metabolic potential of endophytic bacteria , 2014, Current opinion in biotechnology.

[50]  Satpal Singh,et al.  Biotechnological potential of plant-associated endophytic fungi: hope versus hype. , 2014, Trends in biotechnology.

[51]  R. Bauer,et al.  The microbiome of medicinal plants: diversity and importance for plant growth, quality and health , 2013, Front. Microbiol..

[52]  T. S. Suryanarayanan,et al.  Endophyte research: going beyond isolation and metabolite documentation , 2013 .

[53]  C. Jackson,et al.  Culture dependent and independent analysis of bacterial communities associated with commercial salad leaf vegetables , 2013, BMC Microbiology.

[54]  F. Malherbe,et al.  Identification of Traditional Medicinal Plant Extracts with Novel Anti-Influenza Activity , 2013, PloS one.

[55]  R. Edrada-Ebel,et al.  Streptomyces kebangsaanensis sp. nov., an endophytic actinomycete isolated from an ethnomedicinal plant, which produces phenazine-1-carboxylic acid. , 2013, International journal of systematic and evolutionary microbiology.

[56]  P. Poole,et al.  The plant microbiome , 2013, Genome Biology.

[57]  W. Mousa,et al.  The Diversity of Anti-Microbial Secondary Metabolites Produced by Fungal Endophytes: An Interdisciplinary Perspective , 2013, Front. Microbiol..

[58]  K. Fayez,et al.  Isolation and characterization of endophytic bacteria from Plectranthus tenuiflorus medicinal plant in Saudi Arabia desert and their antimicrobial activities , 2013 .

[59]  Wenjun Li,et al.  Abundant and diverse endophytic actinobacteria associated with medicinal plant Maytenus austroyunnanensis in Xishuangbanna tropical rainforest revealed by culture-dependent and culture-independent methods. , 2012, Environmental microbiology reports.

[60]  N. M. Zin,et al.  Tumbuhan etnoperubatan sebagai perumah aktinomiset endofityang bersifat bioaktif(Ethnomedicinal plants as host of bioactive endophytic actinomycetes) , 2012 .

[61]  P. N. Bhattacharyya,et al.  Plant growth-promoting rhizobacteria (PGPR): emergence in agriculture , 2012, World journal of microbiology & biotechnology.

[62]  A. Konopka,et al.  Stochastic and deterministic assembly processes in subsurface microbial communities , 2012, The ISME Journal.

[63]  Daniel G. Brown,et al.  PANDAseq: paired-end assembler for illumina sequences , 2012, BMC Bioinformatics.

[64]  Tao Li,et al.  Diversity and cold adaptation of endophytic fungi from five dominant plant species collected from the Baima Snow Mountain, Southwest China , 2012, Fungal Diversity.

[65]  L. Hauberg-Lotte,et al.  Functional characteristics of an endophyte community colonizing rice roots as revealed by metagenomic analysis. , 2012, Molecular plant-microbe interactions : MPMI.

[66]  Patrick D. Schloss,et al.  Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies , 2011, PloS one.

[67]  K. Sankaranarayanan,et al.  Ancient Microbes from Halite Fluid Inclusions: Optimized Surface Sterilization and DNA Extraction , 2011, PloS one.

[68]  Fei Zou,et al.  BIPES, a cost-effective high-throughput method for assessing microbial diversity , 2011, The ISME Journal.

[69]  L. Rice,et al.  Progress and Challenges in Implementing the Research on ESKAPE Pathogens , 2010, Infection Control & Hospital Epidemiology.

[70]  A. Newton,et al.  Pathogenesis, parasitism and mutualism in the trophic space of microbe-plant interactions. , 2010, Trends in microbiology.

[71]  Susan M. Huse,et al.  Ironing out the wrinkles in the rare biosphere through improved OTU clustering , 2010, Environmental microbiology.

[72]  Christophe Clément,et al.  Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization , 2010 .

[73]  Martin Hartmann,et al.  Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities , 2009, Applied and Environmental Microbiology.

[74]  J. Schwender,et al.  Poplar and its Bacterial Endophytes: Coexistence and Harmony , 2009 .

[75]  Rick L. Stevens,et al.  The RAST Server: Rapid Annotations using Subsystems Technology , 2008, BMC Genomics.

[76]  J. Chun,et al.  EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. , 2007, International journal of systematic and evolutionary microbiology.

[77]  G. Strobel,et al.  Bioactive endophytic streptomycetes from the Malay Peninsula. , 2007, FEMS microbiology letters.

[78]  R. Hückelhoven,et al.  Endophyte or parasite--what decides? , 2006, Current opinion in plant biology.

[79]  B. Bohannan,et al.  Phylogenetic clustering and overdispersion in bacterial communities. , 2006, Ecology.

[80]  Miguel A. Rodríguez-Gironés,et al.  A new algorithm to calculate the nestedness temperature of presence–absence matrices , 2006 .

[81]  T. Stein.  Bacillus subtilis antibiotics: structures, syntheses and specific functions , 2005, Molecular microbiology.

[82]  C. Bacon,et al.  Microbial Endophytes , 2004, Biodiversity & Conservation.

[83]  G. Strobel,et al.  Bioprospecting for Microbial Endophytes and Their Natural Products , 2003, Microbiology and Molecular Biology Reviews.

[84]  C. Franco,et al.  Isolation and Identification of Actinobacteria from Surface-Sterilized Wheat Roots , 2003, Applied and Environmental Microbiology.

[85]  A. McElrone,et al.  Interactive effects of water stress and xylem-limited bacterial infection on the water relations of a host vine. , 2003, Journal of experimental botany.

[86]  J. Bové,et al.  Phloem-and xylem-restricted plant pathogenic bacteria , 2002 .

[87]  K. R. Clarke,et al.  A Method Of Linking Multivariate Community Structure To Environmental Variables , 1993 .

[88]  Warren W. Esty,et al.  The Efficiency of Good's Nonparametric Coverage Estimator , 1986 .