Visual cocaine detection with gold nanoparticles and rationally engineered aptamer structures.

A novel bioassay strategy is designed to detect small-molecule targets such as cocaine, potassium, and adenosine, based on gold nanoparticles (AuNPs) and engineered DNA aptamers. In this design, an aptamer is engineered to be two pieces of random, coil-like single-stranded DNA, which reassembles into the intact aptamer tertiary structure in the presence of the specific target. AuNPs can effectively differentiate between these two states via their characteristic surface-plasmon resonance-based color change. Using this method, cocaine in the low-micromolar range is selectively detected within minutes. This strategy is also shown to be generic and applicable to the detection of several other small-molecule targets.

[1]  J. Szostak,et al.  Selection in vitro of single-stranded DNA molecules that fold into specific ligand-binding structures , 1992, Nature.

[2]  Huixiang Li,et al.  Colorimetric detection of DNA sequences based on electrostatic interactions with unmodified gold nanoparticles. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[3]  Juewen Liu,et al.  Preparation of aptamer-linked gold nanoparticle purple aggregates for colorimetric sensing of analytes , 2006, Nature Protocols.

[4]  G. F. Joyce,et al.  Directed evolution of nucleic acid enzymes. , 2003, Annual review of biochemistry.

[5]  Chunhai Fan,et al.  A gold nanoparticle-based chronocoulometric DNA sensor for amplified detection of DNA , 2007, Nature Protocols.

[6]  Chad A Mirkin,et al.  Nanostructures in biodiagnostics. , 2005, Chemical reviews.

[7]  R. Breaker DNA aptamers and DNA enzymes. , 1997, Current opinion in chemical biology.

[8]  Milan N Stojanovic,et al.  Aptamer-based colorimetric probe for cocaine. , 2002, Journal of the American Chemical Society.

[9]  Jack W. Szostak,et al.  An RNA motif that binds ATP , 1993, Nature.

[10]  Michael Famulok,et al.  9.2 N&V 665 NEW MH , 2006 .

[11]  D. Patel,et al.  Adaptive recognition by nucleic acid aptamers. , 2000, Science.

[12]  Juewen Liu,et al.  Fast colorimetric sensing of adenosine and cocaine based on a general sensor design involving aptamers and nanoparticles. , 2005, Angewandte Chemie.

[13]  Yi Lu,et al.  Smart Nanomaterials Responsive to Multiple Chemical Stimuli with Controllable Cooperativity , 2006 .

[14]  Yingfu Li,et al.  Structure-switching signaling aptamers: transducing molecular recognition into fluorescence signaling. , 2004, Chemistry.

[15]  Chunhai Fan,et al.  A target-responsive electrochemical aptamer switch (TREAS) for reagentless detection of nanomolar ATP. , 2007, Journal of the American Chemical Society.

[16]  Sonia Centi,et al.  Analytical performances of aptamer-based sensing for thrombin detection. , 2007, Analytical chemistry.

[17]  J. Szostak,et al.  A DNA aptamer that binds adenosine and ATP. , 1995, Biochemistry.

[18]  Andrew D. Ellington,et al.  Designed signaling aptamers that transduce molecular recognition to changes in fluorescence intensity , 2000 .

[19]  X. Liu,et al.  A Gold Nanoparticle‐Based Aptamer Target Binding Readout for ATP Assay , 2007 .

[20]  Penmetcha K. R. Kumar,et al.  Aptamer-derived nucleic acid oligos: applications to develop nucleic acid chips to analyze proteins and small ligands. , 2005, Analytical chemistry.

[21]  Milan N Stojanovic,et al.  Fluorescent Sensors Based on Aptamer Self-Assembly. , 2000, Journal of the American Chemical Society.

[22]  C. Mirkin,et al.  Nanoparticles with Raman spectroscopic fingerprints for DNA and RNA detection. , 2002, Science.

[23]  R. G. Freeman,et al.  Preparation and Characterization of Au Colloid Monolayers , 1995 .

[24]  Xiaofang Hu,et al.  Unmodified gold nanoparticles as a colorimetric probe for potassium DNA aptamers. , 2006, Chemical communications.

[25]  Duncan Graham,et al.  Sequence-specific DNA detection using high-affinity LNA-functionalized gold nanoparticles. , 2007, Small.

[26]  C. Mirkin,et al.  Scanometric DNA array detection with nanoparticle probes. , 2000, Science.

[27]  Huixiang Li,et al.  Label-free colorimetric detection of specific sequences in genomic DNA amplified by the polymerase chain reaction. , 2004, Journal of the American Chemical Society.

[28]  M. Stojanović,et al.  Aptamer-based folding fluorescent sensor for cocaine. , 2001, Journal of the American Chemical Society.

[29]  Itamar Willner,et al.  Spotlighting of cocaine by an autonomous aptamer-based machine. , 2007, Journal of the American Chemical Society.

[30]  A. Heeger,et al.  An electronic, aptamer-based small-molecule sensor for the rapid, label-free detection of cocaine in adulterated samples and biological fluids. , 2006, Journal of the American Chemical Society.

[31]  J. Szostak,et al.  In vitro selection of RNA molecules that bind specific ligands , 1990, Nature.

[32]  J. Storhoff,et al.  A DNA-based method for rationally assembling nanoparticles into macroscopic materials , 1996, Nature.