Coherent quenching of a fluorophore for the design of a highly sensitive in-stem molecular beacon.

[1]  Sanjay Tyagi,et al.  Wavelength-shifting molecular beacons , 2000, Nature Biotechnology.

[2]  C. J. Lewis,et al.  Cyanine dye labeling reagents: sulfoindocyanine succinimidyl esters. , 1993, Bioconjugate chemistry.

[3]  U. Krull,et al.  Fluorescence Resonance Energy Transfer and Complex Formation Between Thiazole Orange and Various Dye-DNA Conjugates: Implications in Signaling Nucleic Acid Hybridization , 2006, Journal of Fluorescence.

[4]  Herman O. Sintim,et al.  Junction probes - sequence specific detection of nucleic acids via template enhanced hybridization processes. , 2008, Journal of the American Chemical Society.

[5]  O. Seitz,et al.  Low-noise stemless PNA beacons for sensitive DNA and RNA detection. , 2008, Angewandte Chemie.

[6]  Tom N. Grossmann,et al.  Triplex‐basierte “molecular beacons” als modulare Sonden zur DNA‐Detektion , 2007 .

[7]  A. Libchaber,et al.  Single-mismatch detection using gold-quenched fluorescent oligonucleotides , 2001, Nature Biotechnology.

[8]  F. Bergmann,et al.  Eine konvergente Strategie zur Modifizierung von Peptidnucleinsäuren: neue PNA‐Hybridisierungssonden zum Nachweis von Basen‐Fehlpaarungen , 1999 .

[9]  Weihong Tan,et al.  Molecular assembly of superquenchers in signaling molecular interactions. , 2005, Journal of the American Chemical Society.

[10]  Lily Yang,et al.  Real-time detection of gene expression in cancer cells using molecular beacon imaging: new strategies for cancer research. , 2005, Cancer research.

[11]  Oliver Seitz.  Festphasensynthese doppelt markierter Peptidnucleinsäuren als Sonden für die Echtzeitdetektion der Hybridisierung , 2000 .

[12]  Oliver Seitz,et al.  Triplex molecular beacons as modular probes for DNA detection. , 2007, Angewandte Chemie.

[13]  O. Seitz,et al.  A Convergent Strategy for the Modification of Peptide Nucleic Acids: Novel Mismatch-Specific PNA-Hybridization Probes. , 1999, Angewandte Chemie.

[14]  H. Asanuma,et al.  Threoninol as a scaffold of dyes (threoninol-nucleotide) and their stable interstrand clustering in duplexes. , 2008, Organic & biomolecular chemistry.

[15]  H. Asanuma,et al.  Analysis of coherent heteroclustering of different dyes by use of threoninol nucleotides for comparison with the molecular exciton theory. , 2009, Chemistry.

[16]  Weihong Tan,et al.  Superior structure stability and selectivity of hairpin nucleic acid probes with an l-DNA stem , 2007, Nucleic acids research.

[17]  Dmitry M Kolpashchikov,et al.  A binary DNA probe for highly specific nucleic Acid recognition. , 2006, Journal of the American Chemical Society.

[18]  Kosuke Niwa,et al.  In-stem molecular beacon containing a pseudo base pair of threoninol nucleotides for the removal of background emission. , 2009, Angewandte Chemie.

[19]  K. Schanze,et al.  Direct synthesis of an oligonucleotide-poly(phenylene ethynylene) conjugate with a precise one-to-one molecular ratio. , 2005, Angewandte Chemie.

[20]  Matthew D Disney,et al.  Hybridization-based unquenching of DNA hairpins on au surfaces: prototypical "molecular beacon" biosensors. , 2003, Journal of the American Chemical Society.

[21]  S. Marras.  Interactive Fluorophore and Quencher Pairs for Labeling Fluorescent Nucleic Acid Hybridization Probes , 2008, Molecular biotechnology.

[22]  E. Kool,et al.  Replacing the nucleobases in DNA with designer molecules. , 2002, Accounts of chemical research.

[23]  H. Wagenknecht,et al.  Fluorescent color readout of DNA hybridization with thiazole orange as an artificial DNA base. , 2009, Angewandte Chemie.

[24]  O. Seitz,et al.  FIT probes: peptide nucleic acid probes with a fluorescent base surrogate enable real-time DNA quantification and single nucleotide polymorphism discovery. , 2008, Analytical biochemistry.

[25]  C. Leumann,et al.  Molecular beacons with a homo-DNA stem: improving target selectivity , 2005, Nucleic acids research.

[26]  S. Jockusch,et al.  Fluorescent hybridization probes for sensitive and selective DNA and RNA detection. , 2007, Accounts of chemical research.

[27]  Weihong Tan,et al.  Locked nucleic acid molecular beacons. , 2005, Journal of the American Chemical Society.

[28]  M. Shair,et al.  Reaction microarrays: a method for rapidly determining the enantiomeric excess of thousands of samples. , 2001, Journal of the American Chemical Society.

[29]  Shing-Chung Ngan,et al.  PROTINFO: new algorithms for enhanced protein structure predictions , 2005, Nucleic Acids Res..

[30]  H. Wagenknecht,et al.  Fluoreszenz‐Farbwechsel bei der DNA‐Hybridisierung mit Thiazolorange als artifizieller DNA‐Base , 2009 .

[31]  Henk Fidder,et al.  Intramolecular dimers: a new strategy to fluorescence quenching in dual-labeled oligonucleotide probes. , 2002, Journal of the American Chemical Society.

[32]  H. Wagenknecht,et al.  Thiazole orange and Cy3: improvement of fluorescent DNA probes with use of short range electron transfer. , 2008, The Journal of organic chemistry.

[33]  O. Seitz.  Solid-phase synthesis of doubly labeled peptide nucleic acids as probes for the real-time detection of hybridization , 2000 .

[34]  Sanjay Tyagi,et al.  Molecular Beacons: Probes that Fluoresce upon Hybridization , 1996, Nature Biotechnology.

[35]  A. Herrmann,et al.  Stammlose PNA‐Beacons für die empfindliche DNA‐ und RNA‐Detektion mit geringem Hintergrundrauschen , 2008 .

[36]  Th. Förster.  Zwischenmolekulare Energiewanderung und Fluoreszenz , 1948 .