amniote genome evolution and challenges turtle-bird chromosomal conservation

[1]  W. Earnshaw,et al.  The Centromere: Chromatin Foundation for the Kinetochore Machinery , 2014, Developmental cell.

[2]  D. Badenhorst,et al.  Molecular Cytogenetic Search for Cryptic Sex Chromosomes in Painted Turtles Chrysemys picta , 2014, Cytogenetic and Genome Research.

[3]  Y. Uno,et al.  The Staurotypus Turtles and Aves Share the Same Origin of Sex Chromosomes but Evolved Different Types of Heterogametic Sex Determination , 2014, PloS one.

[4]  Stephen D. Sarre,et al.  Highly Differentiated ZW Sex Microchromosomes in the Australian Varanus Species Evolved through Rapid Amplification of Repetitive Sequences , 2014, PloS one.

[5]  J. Deakin,et al.  Tracing the evolution of amniote chromosomes , 2014, Chromosoma.

[6]  Y. Uno,et al.  Karyotype evolution in monitor lizards: cross-species chromosome mapping of cDNA reveals highly conserved synteny and gene order in the Toxicofera clade , 2013, Chromosome Research.

[7]  Nerida Harley,et al.  Reconstruction of the ancestral marsupial karyotype from comparative gene maps , 2013, BMC Evolutionary Biology.

[8]  A. Georges,et al.  Molecular cytogenetic map of the central bearded dragon, Pogona vitticeps (Squamata: Agamidae) , 2013, Chromosome Research.

[9]  Bronwen L. Aken,et al.  The draft genomes of soft–shell turtle and green sea turtle yield insights into the development and evolution of the turtle–specific body plan , 2013, Nature Genetics.

[10]  Sonja J. Prohaska,et al.  Analysis of the African coelacanth genome sheds light on tetrapod evolution , 2013, Nature.

[11]  N. Valenzuela,et al.  Transcriptional evolution underlying vertebrate sexual development , 2013, Developmental dynamics : an official publication of the American Association of Anatomists.

[12]  Alexander S. Garruss,et al.  Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution , 2013, Nature Genetics.

[13]  Kiyokazu Agata,et al.  Inference of the Protokaryotypes of Amniotes and Tetrapods and the Evolutionary Processes of Microchromosomes from Comparative Gene Mapping , 2012, PloS one.

[14]  F. Delsuc,et al.  Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria) , 2012, BMC Biology.

[15]  M. Ferguson-Smith,et al.  Extensive Homology of Chicken Macrochromosomes in the Karyotypes of Trachemys scripta elegans and Crocodylus niloticus Revealed by Chromosome Painting despite Long Divergence Times , 2012, Cytogenetic and Genome Research.

[16]  A. Desai,et al.  Structure, assembly and reading of centromeric chromatin. , 2012, Current opinion in genetics & development.

[17]  Jennifer C. Drew,et al.  Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes , 2012, Genome Biology.

[18]  Y. Uno,et al.  Chromosomal localization of the 18S-28S and 5S rRNA genes and (TTAGGG)n sequences of butterfly lizards (Leiolepis belliana belliana and Leiolepis boehmei, Agamidae, Squamata) , 2011, Genetics and molecular biology.

[19]  Jacob D. Jaffe,et al.  The genome of the green anole lizard and a comparative analysis with birds and mammals , 2011, Nature.

[20]  D. Adams,et al.  CHROMOSOME NUMBER AND SEX DETERMINATION COEVOLVE IN TURTLES , 2011, Evolution; international journal of organic evolution.

[21]  Lalji Singh The charms of sex chromosomes in snakes , 2011, Journal of Biosciences.

[22]  Albert J. Vilella,et al.  Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis , 2010, PLoS biology.

[23]  Tetsuya Hori,et al.  Chickens possess centromeres with both extended tandem repeats and short non-tandem-repetitive sequences. , 2010, Genome research.

[24]  D. O’Meally,et al.  The First Cytogenetic Map of the Tuatara, Sphenodon punctatus , 2010, Cytogenetic and Genome Research.

[25]  N. Valenzuela Multivariate Expression Analysis of the Gene Network Underlying Sexual Development in Turtle Embryos with Temperature-Dependent and Genotypic Sex Determination , 2010, Sexual Development.

[26]  H. Loxdale,et al.  Rapid genetic changes in natural insect populations , 2010 .

[27]  A. Georges,et al.  The ZW sex microchromosomes of an Australian dragon lizard share no homology with those of other reptiles or birds , 2009, Chromosome Research.

[28]  A. Sinclair,et al.  The avian Z-linked gene DMRT1 is required for male sex determination in the chicken , 2009, Nature.

[29]  Y. Uno,et al.  The ZW Micro-Sex Chromosomes of the Chinese Soft-Shelled Turtle (Pelodiscus sinensis, Trionychidae, Testudines) Have the Same Origin as Chicken Chromosome 15 , 2009, Cytogenetic and Genome Research.

[30]  N. Valenzuela The painted turtle, Chrysemys picta: a model system for vertebrate evolution, ecology, and human health. , 2009, Cold Spring Harbor protocols.

[31]  P. Martinez,et al.  Karyotypic characterization of Trachemys dorbigni (Testudines: Emydidae) and Chelonoidis (Geochelone) donosobarrosi (Testudines: Testudinidae), two species of Cryptodiran turtles from Argentina , 2009, Genetica.

[32]  S. Teichmann,et al.  The impact of genomic neighborhood on the evolution of human and chimpanzee transcriptome. , 2009, Genome research.

[33]  D. Cooper,et al.  Gene synteny comparisons between different vertebrates provide new insights into breakage and fusion events during mammalian karyotype evolution , 2009, BMC Evolutionary Biology.

[34]  Y. Matsuda,et al.  The ZW sex chromosomes of Gekko hokouensis (Gekkonidae, Squamata) represent highly conserved homology with those of avian species , 2009, Chromosoma.

[35]  A. Ruiz-Herrera,et al.  Telomeric repeats far from the ends: mechanisms of origin and role in evolution , 2009, Cytogenetic and Genome Research.

[36]  Loren H Rieseberg,et al.  Revisiting the Impact of Inversions in Evolution: From Population Genetic Markers to Drivers of Adaptive Shifts and Speciation? , 2008, Annual review of ecology, evolution, and systematics.

[37]  C. Organ,et al.  New resources inform study of genome size, content, and organization in nonavian reptiles. , 2008, Integrative and comparative biology.

[38]  E. Olmo Trends in the evolution of reptilian chromosomes. , 2008, Integrative and comparative biology.

[39]  N. Valenzuela Evolution of the gene network underlying gonadogenesis in turtles with temperature-dependent and genotypic sex determination. , 2008, Integrative and comparative biology.

[40]  A. Georges,et al.  An XX/XY heteromorphic sex chromosome system in the Australian chelid turtle Emydura macquarii: A new piece in the puzzle of sex chromosome evolution in turtles , 2008, Chromosome Research.

[41]  L. Gustafsson,et al.  A Gene-Based Genetic Linkage Map of the Collared Flycatcher (Ficedula albicollis) Reveals Extensive Synteny and Gene-Order Conservation During 100 Million Years of Avian Evolution , 2008, Genetics.

[42]  N. Archidiacono,et al.  Primate chromosome evolution: Ancestral karyotypes, marker order and neocentromeres , 2008, Chromosome Research.

[43]  Y. Kohara,et al.  Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates. , 2007, Genome research.

[44]  Y. Matsuda,et al.  Different origins of bird and reptile sex chromosomes inferred from comparative mapping of chicken Z-linked genes , 2007, Cytogenetic and Genome Research.

[45]  H. Tempest,et al.  The evolution of the avian genome as revealed by comparative molecular cytogenetics , 2007, Cytogenetic and Genome Research.

[46]  Fumiko Ohta,et al.  The medaka draft genome and insights into vertebrate genome evolution , 2007, Nature.

[47]  Bronwen L. Aken,et al.  Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences , 2007, Nature.

[48]  Y. Matsuda,et al.  Evidence for different origin of sex chromosomes in snakes, birds, and mammals and step-wise differentiation of snake sex chromosomes , 2006, Proceedings of the National Academy of Sciences.

[49]  A. Bolzán,et al.  Telomeres, interstitial telomeric repeat sequences, and chromosomal aberrations. , 2006, Mutation research.

[50]  A. Helwak,et al.  High Guanine and Cytosine Content Increases mRNA Levels in Mammalian Cells , 2006, PLoS biology.

[51]  Mark Kirkpatrick,et al.  Chromosome Inversions, Local Adaptation and Speciation , 2006, Genetics.

[52]  J. Graves,et al.  Reconstruction of a 450-My-old ancestral vertebrate protokaryotype. , 2006, Trends in genetics : TIG.

[53]  A. Georges,et al.  An XX/XY sex microchromosome system in a freshwater turtle, Chelodina longicollis (Testudines: Chelidae) with genetic sex determination , 2006, Chromosome Research.

[54]  A. Georges,et al.  The dragon lizard Pogona vitticeps has ZZ/ZW micro-sex chromosomes , 2005, Chromosome Research.

[55]  E. Olmo Rate of Chromosome changes and Speciation in Reptiles , 2005, Genetica.

[56]  Kiyokazu Agata,et al.  Highly conserved linkage homology between birds and turtles: Bird and turtle chromosomes are precise counterparts of each other , 2005, Chromosome Research.

[57]  Shyam Prabhakar,et al.  Mapping cis-regulatory domains in the human genome using multi-species conservation of synteny. , 2005, Human molecular genetics.

[58]  F. Ayala,et al.  Chromosome speciation: Humans, Drosophila, and mosquitoes , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[59]  A. Ruiz-Herrera,et al.  Evolutionary breakpoints are co-localized with fragile sites and intrachromosomal telomeric sequences in primates , 2004, Cytogenetic and Genome Research.

[60]  J. Masabanda,et al.  Chromosome assignment of eight SOX family genes in chicken , 2003, Cytogenetic and Genome Research.

[61]  D. Burt,et al.  Origin and evolution of avian microchromosomes , 2002, Cytogenetic and Genome Research.

[62]  E. Olmo,et al.  Different genomic evolutionary rates in the various reptile lineages. , 2002, Gene.

[63]  C. Azzalin,et al.  Human intrachromosomal telomeric-like repeats: sequence organization and mechanisms of origin , 2001, Chromosoma.

[64]  M. Schartl,et al.  Conserved synteny between the chicken Z sex chromosome and human chromosome 9 includes the male regulatory gene DMRT1: a comparative (re)view on avian sex determination , 2000, Cytogenetic and Genome Research.

[65]  K P Fung,et al.  Molecular cloning and characterization of FHL2, a novel LIM domain protein preferentially expressed in human heart. , 1998, Gene.

[66]  D. Birnbaum,et al.  The human FGF9 gene maps to chromosomal region 13q11-q12. , 1995, Genomics.

[67]  A. Monaco,et al.  An unusual member of the nuclear hormone receptor superfamily responsible for X-linked adrenal hypoplasia congenita , 1994, Nature.

[68]  Sahar Mansour,et al.  Campomelic dysplasia and autosomal sex reversal caused by mutations in an SRY-related gene , 1994, Nature.

[69]  H. Williams,et al.  Healing of broken human chromosomes by the addition of telomeric repeats. , 1994, American journal of human genetics.

[70]  A. Baldini,et al.  Improved telomere detection using a telomere repeat probe (TTAGGG)n generated by PCR. , 1991, Nucleic acids research.

[71]  J. Bickham,et al.  Structure and variation of the Nucleolus Organizer Region in turtles , 1985, Genetica.

[72]  S. Bloom,et al.  Visualization of nucleolar organizer regions in mammalian chromosomes using silver staining , 1975, Chromosoma.

[73]  A. T. Sumner A simple technique for demonstrating centromeric heterochromatin. , 1972, Experimental cell research.

[74]  M. Seabright A rapid banding technique for human chromosomes. , 1971, Lancet.

[75]  Nicholas G. Crawford,et al.  More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs. , 2012, Biology letters.

[76]  Daniel E. Warren,et al.  The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage , 2013, Genome Biology.

[77]  P. Shaw,et al.  The Structure of rDNA Chromatin , 2011 .

[78]  Y. Matsuda,et al.  The origin and differentiation process of X and Y chromosomes of the black marsh turtle (Siebenrockiella crassicollis, Geoemydidae, Testudines) , 2011, Chromosome Research.

[79]  Horst Hameister,et al.  Reconstruction of the ancestral ferungulate karyotype by electronic chromosome painting (E-painting) , 2006, Chromosome Research.

[80]  B. Dutrillaux,et al.  Reconstruction of the ancestral karyotype of eutherian mammals , 2004, Chromosome Research.

[81]  J. Graves,et al.  Comparative Chromosome Painting Between Marsupial Orders: Relationships with a 2n = 14 Ancestral Marsupial Karyotype , 2004, Chromosome Research.