Development of SNP Panels as a New Tool to Assess the Genetic Diversity, Population Structure, and Parentage Analysis of the Eastern Oyster (Crassostrea virginica)
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Lauren N. Jescovitch | S. Powers | E. Peatman | Ximing Guo | W. Thongda | Honggang Zhao | M. Schrandt | Ming Liu | Dongdong Zhang
[1] Bi Jun Li,et al. Identifying a Major QTL Associated with Salinity Tolerance in Nile Tilapia Using QTL-Seq , 2018, Marine Biotechnology.
[2] Lan Xu,et al. Estimates of Heritability for Growth and Shell Color Traits and Their Genetic Correlations in the Black Shell Strain of Pacific Oyster Crassostrea gigas , 2017, Marine Biotechnology.
[3] Jinlu Wu,et al. QTL Mapping for Resistance to Iridovirus in Asian Seabass Using Genotyping-by-Sequencing , 2017, Marine Biotechnology.
[4] F. Gugerli,et al. Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri , 2017, BMC Genomics.
[5] H. Ellegren,et al. Determinants of genetic diversity , 2016, Nature Reviews Genetics.
[6] E. Peatman,et al. Discovery and validation of gene‐linked diagnostic SNP markers for assessing hybridization between Largemouth bass (Micropterus salmoides) and Florida bass (M. floridanus) , 2015, Molecular ecology resources.
[7] E. Peatman,et al. SNP discovery in wild and domesticated populations of blue catfish, Ictalurus furcatus, using genotyping‐by‐sequencing and subsequent SNP validation , 2014, Molecular ecology resources.
[8] M. Vandeputte,et al. Parentage assignment with genomic markers: a major advance for understanding and exploiting genetic variation of quantitative traits in farmed aquatic animals , 2014, Front. Genet..
[9] S. Lapègue,et al. Development of SNP‐genotyping arrays in two shellfish species , 2014, Molecular ecology resources.
[10] M. Hare,et al. Transcriptomic analysis of candidate osmoregulatory genes in the eastern oyster Crassostrea virginica , 2014, BMC Genomics.
[11] M. Hare,et al. Spatial genetic features of eastern oysters (Crassostrea virginica Gmelin) in the Gulf of Mexico: northward movement of a secondary contact zone , 2014, Ecology and evolution.
[12] Nguyen Minh Thanh,et al. A Candidate Gene Association Study for Growth Performance in an Improved Giant Freshwater Prawn (Macrobrachium rosenbergii) Culture Line , 2014, Marine Biotechnology.
[13] Qi Li,et al. Development, inheritance and evaluation of 55 novel single nucleotide polymorphism markers for parentage assignment in the Pacific oyster (Crassostrea gigas) , 2014, Genes & Genomics.
[14] J. Peyre,et al. Temporal variation in development of ecosystem services from oyster reef restoration , 2014 .
[15] S. McWilliam,et al. Comparison of microsatellite and SNP DNA markers for pedigree assignment in Black Tiger shrimp, Penaeus monodon , 2014 .
[16] Koichiro Tamura,et al. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. , 2013, Molecular biology and evolution.
[17] G. Dharmarajan,et al. Heterozygote deficiencies caused by a Wahlund effect: Dispelling unfounded expectations , 2013 .
[18] S. Lapègue,et al. A High Load of Non-neutral Amino-Acid Polymorphisms Explains High Protein Diversity Despite Moderate Effective Population Size in a Marine Bivalve With Sweepstakes Reproduction , 2013, G3: Genes | Genomes | Genetics.
[19] Rod Peakall,et al. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research—an update , 2012, Bioinform..
[20] H. Hoekstra,et al. Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species , 2012, PloS one.
[21] Ximing Guo,et al. Effective population sizes of eastern oyster Crassostrea virginica (Gmelin) populations in Delaware Bay, USA , 2012 .
[22] Robert J. Elshire,et al. A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species , 2011, PloS one.
[23] Ximing Guo,et al. Development and validation of single nucleotide polymorphism markers in the eastern oyster Crassostrea virginica Gmelin by mining ESTs and resequencing , 2010 .
[24] P. Gaffney,et al. Population Genetics of the Eastern Oyster Crassostrea virginica (Gmelin, 1791) in the Gulf of Mexico , 2009 .
[25] J. Slate,et al. Gene mapping in the wild with SNPs: guidelines and future directions , 2009, Genetica.
[26] P. Gaffney,et al. GEOGRAPHIC VARIATION IN NUCLEAR GENES OF THE EASTERN OYSTER, CRASSOSTREA VIRGINICA GMELIN , 2009 .
[27] P. Gaffney,et al. THE CASE FOR SEQUENCING THE PACIFIC OYSTER GENOME , 2009 .
[28] P. Etter,et al. Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers , 2008, PloS one.
[29] P. Gaffney,et al. Assessment of Genetic Diversity of the Eastern Oyster Crassostrea virginica in Veracruz, Mexico Using Microsatellite Markers , 2008 .
[30] F. Rousset. genepop’007: a complete re‐implementation of the genepop software for Windows and Linux , 2008, Molecular ecology resources.
[31] P. Boudry,et al. Single Nucleotide polymorphisms and their relationship to codon usage bias in the Pacific oyster Crassostrea gigas. , 2007, Gene.
[32] J. Graffelman,et al. Graphical Tests for Hardy-Weinberg Equilibrium Based on the Ternary Plot , 2007, Human Heredity.
[33] M. Posey,et al. Ecosystem services related to oyster restoration , 2007 .
[34] Zhanjiang Liu,et al. Generation and analysis of ESTs from the eastern oyster, Crassostrea virginica Gmelin and identification of microsatellite and SNP markers , 2007, BMC Genomics.
[35] S. Kalinowski,et al. Revising how the computer program cervus accommodates genotyping error increases success in paternity assignment , 2007, Molecular ecology.
[36] S. Lakhanpaul,et al. Single nucleotide polymorphism (SNP)–Methods and applications in plant genetics: A review , 2006 .
[37] W. Rodney,et al. Comparisons of macrofaunal assemblages on restored and non-restored oyster reefs in mesohaline regions of Chesapeake Bay in Maryland , 2006 .
[38] P. Gaffney. The role of genetics in shellfish restoration , 2006 .
[39] P. Smouse,et al. genalex 6: genetic analysis in Excel. Population genetic software for teaching and research , 2006 .
[40] Robert R. Christian,et al. CONSEQUENCES OF HYPOXIA ON ESTUARINE ECOSYSTEM FUNCTION: ENERGY DIVERSION FROM CONSUMERS TO MICROBES , 2004 .
[41] G. Luikart,et al. SNPs in ecology, evolution and conservation , 2004 .
[42] P. Gaffney,et al. Mitochondrial DNA markers allow monitoring of oyster stock enhancement in the Chesapeake Bay , 2004 .
[43] Jonathan H. Grabowski,et al. Estimated enhancement of fish production resulting from restoring oyster reef habitat: quantitative valuation , 2003 .
[44] J. DeWoody,et al. Prospects for inferring pairwise relationships with single nucleotide polymorphisms , 2003, Molecular ecology.
[45] F. Bonhomme,et al. High variance in reproductive success of the Pacific oyster (Crassostrea gigas, Thunberg) revealed by microsatellite-based parentage analysis of multifactorial crosses , 2002 .
[46] P. Donnelly,et al. Inference of population structure using multilocus genotype data. , 2000, Genetics.
[47] J. Avise,et al. Population structure in the American oyster as inferred by nuclear gene genealogies. , 1998, Molecular biology and evolution.
[48] J. Avise,et al. MOLECULAR GENETIC ANALYSIS OF A STEPPED MULTILOCUS CLINE IN THE AMERICAN OYSTER (CRASSOSTREA VIRGINICA) , 1996, Evolution; international journal of organic evolution.
[49] J. McDonald,et al. Lack of geographic variation in anonymous nuclear polymorphisms in the American oyster, Crassostrea virginica. , 1996, Molecular biology and evolution.
[50] Ximing Guo,et al. All-triploid Pacific oysters (Crassostrea gigas Thunberg) produced by mating tetraploids and diploids , 1996 .
[51] E. G. Zimmerman,et al. Population structure of eastern oysters (Crassostrea virginica) inhabiting the Laguna Madre, Texas, and adjacent bay systems , 1994 .
[52] J. Avise,et al. Balancing selection at allozyme loci in oysters: implications from nuclear RFLPs. , 1992, Science.
[53] J. Avise,et al. A genetic discontinuity in a continuously distributed species: mitochondrial DNA in the American oyster, Crassostrea virginica. , 1990, Genetics.
[54] N. Buroker. Population genetics of the American oyster Crassostrea virginica along the Atlantic coast and the Gulf of Mexico , 1983 .
[55] M. Hare,et al. Reef-Specific Patterns of Gene Expression Plasticity in Eastern Oysters (Crassostrea virginica). , 2016, The Journal of heredity.
[56] Ximing Guo,et al. A 16-microsatellite multiplex assay for parentage assignment in the eastern oyster (Crassostrea virginica Gmelin) , 2010 .
[57] W. Köhler,et al. Population Genetics: Aspects of Biodiversity , 2003 .
[58] M. Posey,et al. Oyster Reef Restoration: Convergence Of Harvest And Conservation Strategies , 2000 .
[59] R. Chapman,et al. Intraspecific variation in the 16S ribosomal gene of Crassostrea virginica. , 1997 .
[60] C. Cunningham,et al. Developing model systems for molecular biogeography: Vicariance and interchange in marine invertebrates , 1994 .