A Genome-Wide Approach to Discovery of Small RNAs Involved in Regulation of Virulence in Vibrio cholerae
暂无分享,去创建一个
Andrew Camilli | A. Camilli | A. Ismail | K. Bodi | Evan S. Bradley | Kip Bodi | Ayman M. Ismail | E. Bradley
[1] K. Terpe. Overview of tag protein fusions: from molecular and biochemical fundamentals to commercial systems , 2002, Applied Microbiology and Biotechnology.
[2] V. DiRita,et al. The Vibrio cholerae ToxR/TcpP/ToxT virulence cascade: distinct roles for two membrane‐localized transcriptional activators on a single promoter , 2000, Molecular microbiology.
[3] J. Vogel,et al. Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq , 2008, PLoS genetics.
[4] B. Bassler,et al. Regulatory small RNAs circumvent the conventional quorum sensing pathway in pandemic Vibrio cholerae , 2007, Proceedings of the National Academy of Sciences.
[5] F. Kull,et al. Structure of Vibrio cholerae ToxT reveals a mechanism for fatty acid regulation of virulence genes , 2010, Proceedings of the National Academy of Sciences.
[6] G. Kovacikova,et al. A Vibrio cholerae LysR Homolog, AphB, Cooperates with AphA at the tcpPH Promoter To Activate Expression of the ToxR Virulence Cascade , 1999, Journal of bacteriology.
[7] Ronald K. Taylor,et al. TcpF Is a Soluble Colonization Factor and Protective Antigen Secreted by El Tor and Classical O1 and O139 Vibrio cholerae Serogroups , 2005, Infection and Immunity.
[8] V. DiRita,et al. Transcriptional control of toxT, a regulatory gene in the ToxR regulon of Vibrio cholerae , 1994, Molecular microbiology.
[9] V. DiRita,et al. The toxbox: specific DNA sequence requirements for activation of Vibrio cholerae virulence genes by ToxT , 2006, Molecular microbiology.
[10] J. Vogel,et al. The Small RNA IstR Inhibits Synthesis of an SOS-Induced Toxic Peptide , 2004, Current Biology.
[11] V. DiRita,et al. Activation of both acfA and acfD transcription by Vibrio cholerae ToxT requires binding to two centrally located DNA sites in an inverted repeat conformation , 2005, Molecular microbiology.
[12] J. Vogel. A rough guide to the non‐coding RNA world of Salmonella , 2009, Molecular microbiology.
[13] J. Vogel,et al. Small non-coding RNAs and the bacterial outer membrane. , 2006, Current opinion in microbiology.
[14] Jun Zhu,et al. CsrA and three redundant small RNAs regulate quorum sensing in Vibrio cholerae , 2005, Molecular microbiology.
[15] A. Sonenshein,et al. Direct Targets of CodY in Staphylococcus aureus , 2010, Journal of bacteriology.
[16] K. Skorupski,et al. Overlapping binding sites for the virulence gene regulators AphA, AphB and cAMP‐CRP at the Vibrio cholerae tcpPH promoter , 2001, Molecular microbiology.
[17] V. Sperandio,et al. The OmpU outer membrane protein, a potential adherence factor of Vibrio cholerae , 1995, Infection and immunity.
[18] R. Kulkarni,et al. Direct Regulation by the Vibrio cholerae Regulator ToxT To Modulate Colonization and Anticolonization Pilus Expression , 2009, Infection and Immunity.
[19] H. Aiba. Mechanism of RNA silencing by Hfq-binding small RNAs. , 2007, Current opinion in microbiology.
[20] Rita Tamayo,et al. Genes induced late in infection increase fitness of Vibrio cholerae after release into the environment. , 2007, Cell host & microbe.
[21] Robert Jones,et al. WOOD HILL FUND , 1922 .
[22] J. Kaper,et al. Construction of an eae deletion mutant of enteropathogenic Escherichia coli by using a positive-selection suicide vector , 1991, Infection and immunity.
[23] A. Mortazavi,et al. Computation for ChIP-seq and RNA-seq studies , 2009, Nature Methods.
[24] J. Mekalanos,et al. A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR , 1988, Journal of bacteriology.
[25] Brian Tjaden,et al. TargetRNA: a tool for predicting targets of small RNA action in bacteria , 2008, Nucleic Acids Res..
[26] L. Poulsen,et al. New Unstable Variants of Green Fluorescent Protein for Studies of Transient Gene Expression in Bacteria , 1998, Applied and Environmental Microbiology.
[27] J. Withey,et al. Bicarbonate Induces Vibrio cholerae Virulence Gene Expression by Enhancing ToxT Activity , 2009, Infection and Immunity.
[28] Branislav Vecerek,et al. Interaction of the RNA chaperone Hfq with mRNAs: direct and indirect roles of Hfq in iron metabolism of Escherichia coli , 2003, Molecular microbiology.
[29] M. Palumbo,et al. Widespread Antisense Transcription in Escherichia coli , 2010, mBio.
[30] J. Vogel,et al. A new Vibrio cholerae sRNA modulates colonization and affects release of outer membrane vesicles , 2008, Molecular microbiology.
[31] M. Livny,et al. High-Throughput, Kingdom-Wide Prediction and Annotation of Bacterial Non-Coding RNAs , 2008, PloS one.
[32] V. DiRita,et al. Transient Transcriptional Activation of theVibrio cholerae El Tor Virulence Regulator ToxT in Response to Culture Conditions , 1999, Infection and Immunity.
[33] M. Waldor,et al. Regulation and Temporal Expression Patterns of Vibrio cholerae Virulence Genes during Infection , 1999, Cell.
[34] G. Sezonov,et al. Escherichia coli Physiology in Luria-Bertani Broth , 2007, Journal of bacteriology.
[35] K. Klose,et al. Regulation of virulence in Vibrio cholerae: the ToxR regulon. , 2007, Future microbiology.
[36] R. Koch. An Address on Cholera and its Bacillus , 1884, British medical journal.
[37] M. Lawrence,et al. Experimental discovery of sRNAs in Vibrio cholerae by direct cloning, 5S/tRNA depletion and parallel sequencing , 2009, Nucleic acids research.
[38] M. Waldor,et al. Hfq is essential for Vibrio cholerae virulence and downregulates σE expression , 2004 .
[39] V. DiRita,et al. The Vibrio cholerae virulence regulatory cascade controls glucose uptake through activation of TarA, a small regulatory RNA , 2010, Molecular microbiology.
[40] Kristin Reiche,et al. The primary transcriptome of the major human pathogen Helicobacter pylori , 2010, Nature.
[41] J. Mekalanos,et al. Use of recombinase gene fusions to identify Vibrio cholerae genes induced during infection , 1995, Molecular microbiology.
[42] R. Fando,et al. Anaerobic growth promotes synthesis of colonization factors encoded at the Vibrio pathogenicity island in Vibrio cholerae El Tor. , 2009, Research in microbiology.
[43] J. Mullins,et al. Photonic detection of bacterial pathogens in living hosts , 1995, Molecular microbiology.
[44] G. Schoolnik,et al. A Bistable Switch and Anatomical Site Control Vibrio cholerae Virulence Gene Expression in the Intestine , 2010, PLoS pathogens.
[45] M. Waldor,et al. Hfq is essential for Vibrio cholerae virulence and downregulates sigma expression. , 2004, Molecular microbiology.
[46] G. Church,et al. RNA expression analysis using a 30 base pair resolution Escherichia coli genome array , 2000, Nature Biotechnology.
[47] B. Kallipolitis,et al. Identification of small Hfq-binding RNAs in Listeria monocytogenes. , 2006, RNA.
[48] V. DiRita,et al. The virulence gene activator ToxT from Vibrio cholerae is a member of the AraC family of transcriptional activators , 1992, Journal of bacteriology.
[49] G. Kovacikova,et al. The LysR-Type Virulence Activator AphB Regulates the Expression of Genes in Vibrio cholerae in Response to Low pH and Anaerobiosis , 2010, Journal of bacteriology.
[50] V. DiRita,et al. Analysis of ToxR‐dependent transcription activation of ompU, the gene encoding a major envelope protein in Vibrio cholerae , 1998, Molecular microbiology.
[51] V. DiRita,et al. Regulation of gene expression in Vibrio cholerae by ToxT involves both antirepression and RNA polymerase stimulation , 2002, Molecular microbiology.
[52] Koichiro Yamamoto,et al. New medium for the production of cholera toxin by Vibrio cholerae O1 biotype El Tor , 1985, Journal of clinical microbiology.
[53] B. Kallipolitis,et al. A conserved small RNA promotes silencing of the outer membrane protein YbfM , 2009, Molecular microbiology.
[54] Koichiro Yamamoto,et al. Culture Conditions for Stimulating Cholera Toxin Production by Vibrio cholerae O1 El Tor , 1986, Microbiology and immunology.
[55] S. Wiles,et al. In Vivo Bioluminescence Imaging of the Murine Pathogen Citrobacter rodentium , 2006, Infection and Immunity.
[56] G. Kovacikova,et al. Vibrio cholerae AphA uses a novel mechanism for virulence gene activation that involves interaction with the LysR‐type regulator AphB at the tcpPH promoter , 2004, Molecular microbiology.
[57] D. Belin,et al. Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter , 1995, Journal of bacteriology.