Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences
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[1] A. Novick,et al. ENZYME INDUCTION AS AN ALL-OR-NONE PHENOMENON. , 1957, Proceedings of the National Academy of Sciences of the United States of America.
[2] E. W. Nester,et al. BIOSYNTHETIC LATENCY IN EARLY STAGES OF DEOXYRIBONUCLEIC ACID TRANSFORMATION IN BACILLUS SUBTILIS , 1963, Journal of bacteriology.
[3] M. Savageau. Comparison of classical and autogenous systems of regulation in inducible operons , 1974, Nature.
[4] D. Koshland,et al. Non-genetic individuality: chance in the single cell , 1976, Nature.
[5] D. Gillespie. Exact Stochastic Simulation of Coupled Chemical Reactions , 1977 .
[6] M. Ko,et al. The dose dependence of glucocorticoid‐inducible gene expression results from changes in the number of transcriptionally active templates. , 1990, The EMBO journal.
[7] M. Dreyfus,et al. Interdependence of translation, transcription and mRNA degradation in the lacZ gene. , 1992, Journal of molecular biology.
[8] B. van Steensel,et al. Fluorescent labeling of nascent RNA reveals transcription by RNA polymerase II in domains scattered throughout the nucleus , 1993, The Journal of cell biology.
[9] AC Tose. Cell , 1993, Cell.
[10] Richard Axel,et al. Spatial segregation of odorant receptor expression in the mammalian olfactory epithelium , 1993, Cell.
[11] D. Jackson,et al. Visualization of focal sites of transcription within human nuclei. , 1993, The EMBO journal.
[12] I. Ross,et al. Transcription of individual genes in eukaryotic cells occurs randomly and infrequently , 1994, Immunology and cell biology.
[13] M. Braddock,et al. Real-time analysis of the transcriptional regulation of HIV and hCMV promoters in single mammalian cells. , 1995, Journal of cell science.
[14] Steven H. Strogatz,et al. Cellular Construction of a Circadian Clock: Period Determination in the Suprachiasmatic Nuclei , 1997, Cell.
[15] A. Arkin,et al. Stochastic mechanisms in gene expression. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[16] R. Singer,et al. Localization of ASH1 mRNA particles in living yeast. , 1998, Molecular cell.
[17] T. Enver,et al. Do stem cells play dice? , 1998, Blood.
[18] C S Robinson,et al. Transcription occurs in pulses in muscle fibers. , 1998, Genes & development.
[19] Julian R. E. Davis,et al. Dynamic changes in prolactin promoter activation in individual living lactotrophic cells. , 1998, Endocrinology.
[20] A. Arkin,et al. Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells. , 1998, Genetics.
[21] F S Fay,et al. Visualization of single RNA transcripts in situ. , 1998, Science.
[22] E. Salmon,et al. Localization and anchoring of mRNA in budding yeast , 1999, Current Biology.
[23] H. Sakano,et al. Olfactory Neurons Expressing Closely Linked and Homologous Odorant Receptor Genes Tend to Project Their Axons to Neighboring Glomeruli on the Olfactory Bulb , 1999, The Journal of Neuroscience.
[24] G. Sudlow,et al. Large-Scale Chromatin Unfolding and Remodeling Induced by VP16 Acidic Activation Domain , 1999, The Journal of cell biology.
[25] J. Collins,et al. Construction of a genetic toggle switch in Escherichia coli , 2000, Nature.
[26] M. Ehrenberg,et al. Random signal fluctuations can reduce random fluctuations in regulated components of chemical regulatory networks. , 2000, Physical review letters.
[27] M. Elowitz,et al. A synthetic oscillatory network of transcriptional regulators , 2000, Nature.
[28] L. Serrano,et al. Engineering stability in gene networks by autoregulation , 2000, Nature.
[29] J. Hasty,et al. Noise-based switches and amplifiers for gene expression. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[30] D. Hume,et al. Probability in transcriptional regulation and its implications for leukocyte differentiation and inducible gene expression. , 2000, Blood.
[31] B. Séraphin,et al. Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion , 2001, The EMBO journal.
[32] M. Thattai,et al. Intrinsic noise in gene regulatory networks , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[33] T. Kepler,et al. Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations. , 2001, Biophysical journal.
[34] S. Lindquist,et al. Hsp90 as a capacitor of phenotypic variation , 2002, Nature.
[35] P. Swain,et al. Intrinsic and extrinsic contributions to stochasticity in gene expression , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[36] Ertugrul M. Ozbudak,et al. Regulation of noise in the expression of a single gene , 2002, Nature Genetics.
[37] M. Thattai,et al. Attenuation of noise in ultrasensitive signaling cascades. , 2002, Biophysical journal.
[38] J. Strouboulis,et al. Stochastic patterns in globin gene expression are established prior to transcriptional activation and are clonally inherited. , 2002, Molecular cell.
[39] Farren J. Isaacs,et al. Prediction and measurement of an autoregulatory genetic module , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[40] Graham R. Stewart,et al. Tuberculosis: a problem with persistence , 2003, Nature Reviews Microbiology.
[41] Mads Kærn,et al. Noise in eukaryotic gene expression , 2003, Nature.
[42] J. Paulsson. Summing up the noise in gene networks , 2004, Nature.
[43] I. Bose,et al. Graded and binary responses in stochastic gene expression , 2004, Physical biology.
[44] S. Leibler,et al. Bacterial Persistence as a Phenotypic Switch , 2004, Science.
[45] C. Thummel,et al. Faculty Opinions recommendation of Circadian gene expression in individual fibroblasts: cell-autonomous and self-sustained oscillators pass time to daughter cells. , 2004 .
[46] M. Thattai,et al. Stochastic Gene Expression in Fluctuating Environments , 2004, Genetics.
[47] Ertugrul M. Ozbudak,et al. Multistability in the lactose utilization network of Escherichia coli , 2004, Nature.
[48] Stanislas Leibler,et al. Resilient circadian oscillator revealed in individual cyanobacteria , 2004, Nature.
[49] Cameron S. Osborne,et al. Active genes dynamically colocalize to shared sites of ongoing transcription , 2004, Nature Genetics.
[50] Felix Naef,et al. Circadian Gene Expression in Individual Fibroblasts Cell-Autonomous and Self-Sustained Oscillators Pass Time to Daughter Cells , 2004, Cell.
[51] J. Raser,et al. Control of Stochasticity in Eukaryotic Gene Expression , 2004, Science.
[52] Martin Fussenegger,et al. Hysteresis in a synthetic mammalian gene network. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[53] P. Swain,et al. Gene Regulation at the Single-Cell Level , 2005, Science.
[54] Daniel B. Forger,et al. Stochastic simulation of the mammalian circadian clock. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[55] Jared E. Toettcher,et al. Stochastic Gene Expression in a Lentiviral Positive-Feedback Loop: HIV-1 Tat Fluctuations Drive Phenotypic Diversity , 2005, Cell.
[56] Sierd Bron,et al. Stripping Bacillus: ComK auto‐stimulation is responsible for the bistable response in competence development , 2005, Molecular microbiology.
[57] T. Kondo,et al. Reconstitution of Circadian Oscillation of Cyanobacterial KaiC Phosphorylation in Vitro , 2005, Science.
[58] D. Dubnau,et al. Bistability in the Bacillus subtilis K‐state (competence) system requires a positive feedback loop , 2005, Molecular microbiology.
[59] R. Weiss,et al. Ultrasensitivity and noise propagation in a synthetic transcriptional cascade. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[60] C. Pesce,et al. Regulated cell-to-cell variation in a cell-fate decision system , 2005, Nature.
[61] J. Timmer,et al. Design principles of a bacterial signalling network , 2005, Nature.
[62] A. Oudenaarden,et al. Enhancement of cellular memory by reducing stochastic transitions , 2005, Nature.
[63] E. Cox,et al. Real-Time Kinetics of Gene Activity in Individual Bacteria , 2005, Cell.
[64] A. van Oudenaarden,et al. Noise Propagation in Gene Networks , 2005, Science.
[65] P. Rorsman,et al. Gene expression profiling in single cells from the pancreatic islets of Langerhans reveals lognormal distribution of mRNA levels. , 2005, Genome research.
[66] S. Leibler,et al. Phenotypic Diversity, Population Growth, and Information in Fluctuating Environments , 2005, Science.
[67] A. Arkin,et al. Diversity in times of adversity: probabilistic strategies in microbial survival games. , 2005, Journal of theoretical biology.
[68] Benjamin B. Kaufmann,et al. Contributions of low molecule number and chromosomal positioning to stochastic gene expression , 2005, Nature Genetics.
[69] J. Vaupel,et al. A stress-sensitive reporter predicts longevity in isogenic populations of Caenorhabditis elegans , 2005, Nature Genetics.
[70] X. Xie,et al. Probing Gene Expression in Live Cells, One Protein Molecule at a Time , 2006, Science.
[71] J. Derisi,et al. Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise , 2006, Nature.
[72] G. Hager,et al. Single-cell analysis of glucocorticoid receptor action reveals that stochastic post-chromatin association mechanisms regulate ligand-specific transcription. , 2006, Molecular endocrinology.
[73] James R Broach,et al. Single-cell observations reveal intermediate transcriptional silencing states. , 2006, Molecular cell.
[74] Esteban O. Mazzoni,et al. Stochastic spineless expression creates the retinal mosaic for colour vision , 2006, Nature.
[75] Konstantinos Michalodimitrakis,et al. Noise in transcription negative feedback loops: simulation and experimental analysis , 2006, Molecular systems biology.
[76] M. L. Simpson,et al. Gene network shaping of inherent noise spectra , 2006, Nature.
[77] R. Singer,et al. Transcriptional Pulsing of a Developmental Gene , 2006, Current Biology.
[78] David Bryder,et al. Transcription factor profiling in individual hematopoietic progenitors by digital RT-PCR , 2006, Proceedings of the National Academy of Sciences.
[79] E. O’Shea,et al. Noise in protein expression scales with natural protein abundance , 2006, Nature Genetics.
[80] R. Milo,et al. Variability and memory of protein levels in human cells , 2006, Nature.
[81] D. Tranchina,et al. Stochastic mRNA Synthesis in Mammalian Cells , 2006, PLoS biology.
[82] D. Volfson,et al. Origins of extrinsic variability in eukaryotic gene expression , 2006, Nature.
[83] N. Friedman,et al. Stochastic protein expression in individual cells at the single molecule level , 2006, Nature.
[84] Farren J. Isaacs,et al. Phenotypic consequences of promoter-mediated transcriptional noise. , 2006, Molecular cell.
[85] Ertugrul M. Ozbudak,et al. Predicting stochastic gene expression dynamics in single cells. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[86] Nir Friedman,et al. Linking stochastic dynamics to population distribution: an analytical framework of gene expression. , 2006, Physical review letters.
[87] Jan Vijg,et al. Increased cell-to-cell variation in gene expression in ageing mouse heart , 2006, Nature.
[88] Gürol M. Süel,et al. An excitable gene regulatory circuit induces transient cellular differentiation , 2006, Nature.
[89] Aviv Regev,et al. Dissecting Timing Variability in Yeast Meiosis , 2007, Cell.
[90] D. Dubnau,et al. Noise in Gene Expression Determines Cell Fate in Bacillus subtilis , 2007, Science.
[91] Alexander van Oudenaarden,et al. Stochastic gene expression out-of-steady-state in the cyanobacterial circadian clock , 2007, Nature.
[92] Mark Ptashne,et al. On the use of the word ‘epigenetic’ , 2007, Current Biology.
[93] Rajan P Kulkarni,et al. Tunability and Noise Dependence in Differentiation Dynamics , 2007, Science.
[94] Jerome T. Mettetal,et al. Heritable Stochastic Switching Revealed by Single-Cell Genealogy , 2007, PLoS biology.
[95] J. Collins,et al. Combinatorial promoter design for engineering noisy gene expression , 2007, Proceedings of the National Academy of Sciences.
[96] L. Hurst,et al. Evolution of chromosome organization driven by selection for reduced gene expression noise , 2007, Nature Genetics.
[97] Frederick R. Cross,et al. The effects of molecular noise and size control on variability in the budding yeast cell cycle , 2007, Nature.
[98] Leor S Weinberger,et al. An HIV Feedback Resistor: Auto-Regulatory Circuit Deactivator and Noise Buffer , 2006, PLoS biology.
[99] Julien F. Ollivier,et al. Colored extrinsic fluctuations and stochastic gene expression , 2008, Molecular systems biology.
[100] Hannah H. Chang,et al. Transcriptome-wide noise controls lineage choice in mammalian progenitor cells , 2008, Nature.
[101] Jerome T. Mettetal,et al. Stochastic switching as a survival strategy in fluctuating environments , 2008, Nature Genetics.
[102] M. L. Simpson,et al. Transient-mediated fate determination in a transcriptional circuit of HIV , 2007, Nature Genetics.
[103] J. Paulsson,et al. Effects of Molecular Memory and Bursting on Fluctuations in Gene Expression , 2008, Science.
[104] Jeffrey W. Smith,et al. Stochastic Gene Expression in a Single Cell , 2022 .