Phylogenetic Analysis and Virulence Characteristics of Methicillin-Resistant Staphylococcus aureus ST45 in China: a Hyper-Virulent Clone Associated with Bloodstream Infections

Methicillin-resistant Staphylococcus aureus ST45 is epidemic worldwide. This study contributed to the awareness of the Chinese hyper-virulent MRSA ST45 strains and served as a timely reminder of its wide dissemination of clonotypes. Further, we provide novel insights for prevention from the perspective of bloodstream infections. ST45-SCCmec V is a clonotype deserving special attention in China, and we performed genetic and phenotypic analyses for the first time on it. ABSTRACT Methicillin-resistant Staphylococcus aureus (MRSA) sequence type 45 (ST45) was rarely found in China. This study was conducted to trace the transmission and evolution of emerging MRSA ST45 strains in mainland China and explore its virulence. A total of 27 ST45 isolates were included for whole-genome sequencing and genetic characteristic analysis. Epidemiological results showed that MRSA ST45 isolates were often obtained from blood, primarily originated in Guangzhou, and carried diverse virulence and drug resistance genes. Staphylococcal cassette chromosome mec type IV (SCCmec IV) dominated in MRSA ST45 (23/27, 85.2%). ST45-SCCmec V was located on a phylogenetic clade distinct from the SCCmec IV cluster. We selected two representative isolates, MR370 (ST45-SCCmec IV) and MR387 (ST45-SCCmec V), and performed hemolysin activity, a blood killing assay, a Galleria mellonella infection model, and a mouse bacteremia model, as well as real-time fluorescence quantitative PCR. MR370 was proved to have extreme virulence in the phenotypic assays and at the mRNA level compared with ST59, ST5, and USA300 MRSA strains. MR387 was comparable to USA300-LAC on the phenotype and was verified to have higher expression of scn, chp, sak, saeR, agrA, and RNAIII than USA300-LAC. The results emphasized the extraordinary performance of MR370 and the good potential of MR387 in virulence causing bloodstream infection. Meanwhile, we conclude that China MRSA ST45 showed two different clonotypes, which may be widespread in the future. The entire study is valuable as a timely reminder and reports virulence phenotypes of China MRSA ST45 for the first time. IMPORTANCE Methicillin-resistant Staphylococcus aureus ST45 is epidemic worldwide. This study contributed to the awareness of the Chinese hyper-virulent MRSA ST45 strains and served as a timely reminder of its wide dissemination of clonotypes. Further, we provide novel insights for prevention from the perspective of bloodstream infections. ST45-SCCmec V is a clonotype deserving special attention in China, and we performed genetic and phenotypic analyses for the first time on it.

[1]  Liang Chen,et al.  Methicillin-resistant Staphylococcus aureus in China: a multicentre longitudinal study and whole-genome sequencing , 2022, Emerging microbes & infections.

[2]  Yhu-Chering Huang,et al.  USA 300 (sequence type 8) became a major clone of methicillin-resistant Staphylococcus aureus in northern Taiwan. , 2022, International journal of antimicrobial agents.

[3]  V. Cheng,et al.  Gastrointestinal colonization of methicillin-resistant Staphylococcus aureus: an unrecognized burden in the hospital infection control. , 2021, The Journal of hospital infection.

[4]  Bingshao Liang,et al.  Active Surveillance, Drug Resistance, and Genotypic Profiling of Staphylococcus aureus Among School-Age Children in China , 2021, Frontiers in Medicine.

[5]  P. Bork,et al.  Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation , 2021, Nucleic Acids Res..

[6]  Yhu-Chering Huang,et al.  Detection, spread and phylogeny of meticillin-resistant Staphylococcus aureus sequence type 45 in Taiwan , 2021, Microbial genomics.

[7]  T. Kovács,et al.  Isolation of a Novel Lytic Bacteriophage against a Nosocomial Methicillin-Resistant Staphylococcus aureus Belonging to ST45 , 2020, BioMed research international.

[8]  A. Mellmann,et al.  Global Epidemiology and Evolutionary History of Staphylococcus aureus ST45 , 2020, Journal of Clinical Microbiology.

[9]  Shuwen Yao,et al.  Prevalence, Characterization, and Drug Resistance of Staphylococcus Aureus in Feces From Pediatric Patients in Guangzhou, China , 2020, Frontiers in Medicine.

[10]  Shaohua Zhao,et al.  Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates , 2019, Antimicrobial Agents and Chemotherapy.

[11]  Yirong Li,et al.  Molecular characteristics and virulence gene profiles of Staphylococcus aureus isolates in Hainan, China , 2019, BMC Infectious Diseases.

[12]  Min-Chi Lu,et al.  Prevalence and molecular characteristics of methicillin-resistant Staphylococcus aureus among nasal carriage strains isolated from emergency department patients and healthcare workers in central Taiwan. , 2019, Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi.

[13]  K. R. Santos,et al.  Molecular characteristics of methicillin-resistant Staphylococcus aureus isolates from hospital and community environments in northeastern Brazil , 2019, The Brazilian journal of infectious diseases : an official publication of the Brazilian Society of Infectious Diseases.

[14]  Jichang Chen,et al.  Molecular characterization and antimicrobial susceptibility of Staphylococcus aureus isolated from children with acute otitis media in Liuzhou, China , 2018, BMC Pediatrics.

[15]  Yanmei Huang,et al.  Prevalence and Characterization of Staphylococcus aureus Isolated From Women and Children in Guangzhou, China , 2018, Front. Microbiol..

[16]  Sahreena S. Lakhundi,et al.  Methicillin-Resistant Staphylococcus aureus: Molecular Characterization, Evolution, and Epidemiology , 2018, Clinical Microbiology Reviews.

[17]  J. Corander,et al.  Gene exchange drives the ecological success of a multi-host bacterial pathogen , 2018, Nature Ecology & Evolution.

[18]  O. Lund,et al.  SCCmecFinder, a Web-Based Tool for Typing of Staphylococcal Cassette Chromosome mec in Staphylococcus aureus Using Whole-Genome Sequence Data , 2018, mSphere.

[19]  M. Tanner,et al.  Community-Associated Staphylococcus aureus from Sub-Saharan Africa and Germany: A Cross-Sectional Geographic Correlation Study , 2017, Scientific Reports.

[20]  Yonghong Xiao,et al.  Community-associated meticillin-resistant Staphylococcus aureus pneumonia in China. , 2017, The Lancet. Infectious diseases.

[21]  M. Otto,et al.  Virulence determinants associated with the Asian community-associated methicillin-resistant Staphylococcus aureus lineage ST59 , 2016, Scientific Reports.

[22]  Christopher S. Stach,et al.  Phenotypes and Virulence among Staphylococcus aureus USA100, USA200, USA300, USA400, and USA600 Clonal Lineages , 2016, mSphere.

[23]  Jukka Corander,et al.  Whole-Genome Sequencing for Routine Pathogen Surveillance in Public Health: a Population Snapshot of Invasive Staphylococcus aureus in Europe , 2016, mBio.

[24]  Brian D. Ondov,et al.  The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes , 2014, Genome Biology.

[25]  P. Worning,et al.  Comparing Whole-Genome Sequencing with Sanger Sequencing for spa Typing of Methicillin-Resistant Staphylococcus aureus , 2014, Journal of Clinical Microbiology.

[26]  Björn Usadel,et al.  Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..

[27]  V. Nizet,et al.  Human Cathelicidin Ll-37 Resistance and Increased Daptomycin Mic in Methicillin-resistant Staphylococcus Aureus Strain Usa600 (st45) Are Associated with Increased Mortality in a Hospital Setting Bacteremia Caused by Methicillin-resistant Staphylococcus Aureus (mrsa) Usa600 Has Been Associated with I , 2022 .

[28]  S. Nouér,et al.  Meticillin-resistant Staphylococcus aureus: spread of specific lineages among patients in different wards at a Brazilian teaching hospital. , 2014, The Journal of hospital infection.

[29]  L. Deng,et al.  Multidrug-resistant clones of community-associated meticillin-resistant Staphylococcus aureus isolated from Chinese children and the resistance genes to clindamycin and mupirocin. , 2012, Journal of medical microbiology.

[30]  Sergey I. Nikolenko,et al.  SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing , 2012, J. Comput. Biol..

[31]  Y. Lau,et al.  Molecular epidemiology and nasal carriage of Staphylococcus aureus and methicillin-resistant S. aureus among young children attending day care centers and kindergartens in Hong Kong. , 2012, The Journal of infection.

[32]  Adeline R. Whitney,et al.  Comparative analysis of USA300 virulence determinants in a rabbit model of skin and soft tissue infection. , 2011, The Journal of infectious diseases.

[33]  Stefan Schwarz,et al.  A Field Guide to Pandemic, Epidemic and Sporadic Clones of Methicillin-Resistant Staphylococcus aureus , 2011, PloS one.

[34]  F. DeLeo,et al.  Comparative analysis of virulence and toxin expression of global community-associated methicillin-resistant Staphylococcus aureus strains. , 2010, The Journal of infectious diseases.

[35]  M. Zervos,et al.  USA600 (ST45) Methicillin-Resistant Staphylococcus aureus Bloodstream Infections in Urban Detroit , 2010, Journal of Clinical Microbiology.

[36]  P. Ho,et al.  Changes in the epidemiology of methicillin-resistant Staphylococcus aureus associated with spread of the ST45 lineage in Hong Kong. , 2009, Diagnostic microbiology and infectious disease.

[37]  K. Yuen,et al.  Molecular epidemiology of methicillin-resistant Staphylococcus aureus in residential care homes for the elderly in Hong Kong. , 2008, Diagnostic microbiology and infectious disease.

[38]  S. Crawford,et al.  Contrasting Pediatric and Adult Methicillin-resistant Staphylococcus aureus Isolates , 2006, Emerging infectious diseases.

[39]  W. V. van Wamel,et al.  The Innate Immune Modulators Staphylococcal Complement Inhibitor and Chemotaxis Inhibitory Protein of Staphylococcus aureus Are Located on β-Hemolysin-Converting Bacteriophages , 2006, Journal of bacteriology.

[40]  M. Enright,et al.  Contemporary Methicillin-Resistant Staphylococcus aureus Clones in Hong Kong , 2005, Journal of Clinical Microbiology.

[41]  C. Walsh,et al.  The evolutionary history of methicillin-resistant Staphylococcus aureus (MRSA) , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[42]  M. Ferraro Performance standards for antimicrobial susceptibility testing , 2001 .

[43]  S. Arvidson,et al.  Transcriptional control of the agr‐dependent virulence gene regulator, RNAIII, in Staphylococcus aureus , 1996, Molecular microbiology.