Chemically transferable coarse-grained potentials from conditional reversible work calculations.
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[1] Gregory A Voth,et al. A multiscale coarse-graining method for biomolecular systems. , 2005, The journal of physical chemistry. B.
[2] Alexander Lukyanov,et al. Versatile Object-Oriented Toolkit for Coarse-Graining Applications. , 2009, Journal of chemical theory and computation.
[3] M Scott Shell,et al. The relative entropy is fundamental to multiscale and inverse thermodynamic problems. , 2008, The Journal of chemical physics.
[4] Christoph Junghans,et al. Kirkwood-Buff Coarse-Grained Force Fields for Aqueous Solutions. , 2012, Journal of chemical theory and computation.
[5] D. Tieleman,et al. The MARTINI force field: coarse grained model for biomolecular simulations. , 2007, The journal of physical chemistry. B.
[6] Reinier L C Akkermans. Mesoscale model parameters from molecular cluster calculations. , 2008, The Journal of chemical physics.
[7] James B. Adams,et al. Interatomic Potentials from First-Principles Calculations: The Force-Matching Method , 1993, cond-mat/9306054.
[8] Carsten Kutzner,et al. GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation. , 2008, Journal of chemical theory and computation.
[9] David J Keffer,et al. Use of the Ornstein-Zernike Percus-Yevick equation to extract interaction potentials from pair correlation functions. , 2010, Physical review. E, Statistical, nonlinear, and soft matter physics.
[11] J. Kirkwood,et al. The Statistical Mechanical Theory of Solutions. I , 1951 .
[12] Dirk Reith,et al. Deriving effective mesoscale potentials from atomistic simulations , 2002, J. Comput. Chem..
[13] Kurt Kremer,et al. Multiscale modeling of soft matter: scaling of dynamics. , 2011, Physical chemistry chemical physics : PCCP.
[14] Emiliano Brini,et al. Conditional reversible work method for molecular coarse graining applications. , 2011, Physical chemistry chemical physics : PCCP.
[15] B. Hess,et al. Hydration thermodynamic properties of amino acid analogues: a systematic comparison of biomolecular force fields and water models. , 2006, The journal of physical chemistry. B.
[16] Berk Hess,et al. Modeling multibody effects in ionic solutions with a concentration dependent dielectric permittivity. , 2006, Physical review letters.
[17] Emiliano Brini,et al. Thermodynamic transferability of coarse-grained potentials for polymer-additive systems. , 2012, Physical chemistry chemical physics : PCCP.
[18] Christine Peter,et al. Transferability of Coarse Grained Potentials: Implicit Solvent Models for Hydrated Ions. , 2011, Journal of chemical theory and computation.
[19] Gregory A. Voth,et al. The multiscale coarse-graining method. I. A rigorous bridge between atomistic and coarse-grained models. , 2008, The Journal of chemical physics.
[20] A. Louis. Beware of density dependent pair potentials , 2002, cond-mat/0205110.
[21] Chia-tsun Liu,et al. THE EXCESS VOLUME OF BINARY MIXTURES OF NORMAL ALKANES , 1963 .
[22] Kurt Kremer,et al. Coarse-Grained Polymer Melts Based on Isolated Atomistic Chains: Simulation of Polystyrene of Different Tacticities , 2009 .
[23] W. L. Jorgensen,et al. The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin. , 1988, Journal of the American Chemical Society.
[24] M. Parrinello,et al. Polymorphic transitions in single crystals: A new molecular dynamics method , 1981 .
[25] A. Lyubartsev,et al. Calculation of effective interaction potentials from radial distribution functions: A reverse Monte Carlo approach. , 1995, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.
[26] Christine Peter,et al. A Chemically Accurate Implicit-Solvent Coarse-Grained Model for Polystyrenesulfonate Solutions , 2012 .