Dissection of Symbiosis and Organ Development by Integrated Transcriptome Analysis of Lotus japonicus Mutant and Wild-Type Plants
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Michael K. Udvardi | Satoshi Tabata | Leif Schauser | Jens Stougaard | Matthew A. Hannah | Georg F. Weiller | Nicolas Goffard | S. Tabata | G. Weiller | L. Schauser | M. Udvardi | M. Hannah | J. Stougaard | Shusei Sato | L. Krusell | S. Radutoiu | T. Ott | N. Goffard | D. H. Sanchez | Shusei Sato | Poul Liboriussen | Felix Lippold | Thomas Ott | Niels Høgslund | Simona Radutoiu | Lene Krusell | Vera Voroshilova | Diego H. Sanchez | Gitte V. Lohmann | Poul Liboriussen | Felix Lippold | V. Voroshilova | Niels Høgslund | G. V. Lohmann | G. Lohmann | D. H. Sánchez | Lene Krusell
[1] J. Perry,et al. Lotus japonicus Nodulation Requires Two GRAS Domain Regulators, One of Which Is Functionally Conserved in a Non-Legume1[C][W] , 2006, Plant Physiology.
[2] J. Kieber,et al. Characterization of the response of the Arabidopsis response regulator gene family to cytokinin. , 2000, Plant physiology.
[3] L. Schauser,et al. LORE1, an active low-copy-number TY3-gypsy retrotransposon family in the model legume Lotus japonicus. , 2005, The Plant journal : for cell and molecular biology.
[4] T. Bisseling,et al. A Putative Ca2+ and Calmodulin-Dependent Protein Kinase Required for Bacterial and Fungal Symbioses , 2004, Science.
[5] Benjamin M. Bolstad,et al. affy - analysis of Affymetrix GeneChip data at the probe level , 2004, Bioinform..
[6] L. Tirichine,et al. Spontaneous root-nodule formation in the model legume Lotus japonicus: a novel class of mutants nodulates in the absence of rhizobia. , 2006, Molecular plant-microbe interactions : MPMI.
[7] Naoya Takeda,et al. Plastid proteins crucial for symbiotic fungal and bacterial entry into plant roots , 2005, Nature.
[8] J. Downie,et al. Calcium, kinases and nodulation signalling in legumes , 2004, Nature Reviews Molecular Cell Biology.
[9] W. Broughton,et al. Control of leghaemoglobin synthesis in snake beans. , 1971, The Biochemical journal.
[10] A. Kereszt,et al. A receptor kinase gene regulating symbiotic nodule development , 2002, Nature.
[11] M. Griesser,et al. Two tomato alpha-expansins show distinct spatial and temporal expression patterns during development of nematode-induced syncytia. , 2008, Physiologia plantarum.
[12] S. Tabata,et al. CYCLOPS, a mediator of symbiotic intracellular accommodation , 2008, Proceedings of the National Academy of Sciences.
[13] T. Winzer,et al. Seven Lotus japonicus Genes Required for Transcriptional Reprogramming of the Root during Fungal and Bacterial Symbiosisw⃞ , 2005, The Plant Cell Online.
[14] D. Bush,et al. Expression and transcriptional regulation of amino acid transporters in plants , 2006, Amino Acids.
[15] E. Leidi,et al. Nitrogen and phosphorus availability limit N2 fixation in bean , 2000 .
[16] T. Thykjær,et al. Symbiotic mutants deficient in nodule establishment identified after T-DNA transformation of Lotus japonicus , 1998, Molecular and General Genetics MGG.
[17] Johannes Madlung,et al. An Exocyst Complex Functions in Plant Cell Growth in Arabidopsis and Tobacco[W] , 2008, The Plant Cell Online.
[18] S. Tabata,et al. A plant receptor-like kinase required for both bacterial and fungal symbiosis , 2002, Nature.
[19] G. Stacey,et al. Differential regulation of a family of apyrase genes from Medicago truncatula. , 2001, Plant physiology.
[20] M. M. Lucas,et al. Legume nodule senescence: roles for redox and hormone signalling in the orchestration of the natural aging process. , 2004, The New phytologist.
[21] D. Cosgrove,et al. © 2005 BioMed Central Ltd Summary , 2005 .
[22] Leif Schauser,et al. A plant regulator controlling development of symbiotic root nodules , 1999, Nature.
[23] J. Thomas-Oates,et al. Structural identification of the iipo‐chitin oligosaccharide nodulation signals of Rhizobium loti , 1995, Molecular microbiology.
[24] S. Tabata,et al. Shoot control of root development and nodulation is mediated by a receptor-like kinase , 2002, Nature.
[25] G. Stacey,et al. GS52 Ecto-Apyrase Plays a Critical Role during Soybean Nodulation1[W][OA] , 2008, Plant Physiology.
[26] H. Mori,et al. Genome Structure of the Legume, Lotus japonicus , 2008, DNA research : an international journal for rapid publication of reports on genes and genomes.
[27] Gordon K. Smyth,et al. limma: Linear Models for Microarray Data , 2005 .
[28] M. Crespi,et al. The Medicago truncatula CRE1 Cytokinin Receptor Regulates Lateral Root Development and Early Symbiotic Interaction with Sinorhizobium meliloti[W] , 2006, The Plant Cell Online.
[29] M. Guerinot,et al. GmZIP1 Encodes a Symbiosis-specific Zinc Transporter in Soybean* , 2002, The Journal of Biological Chemistry.
[30] Xiaorong Fan,et al. Amino acids and nitrate as signals for the regulation of nitrogen acquisition. , 2007, Journal of experimental botany.
[31] S. Dinesh-Kumar,et al. Chloroplastic Protein NRIP1 Mediates Innate Immune Receptor Recognition of a Viral Effector , 2008, Cell.
[32] T. Bisseling,et al. NSP1 of the GRAS Protein Family Is Essential for Rhizobial Nod Factor-Induced Transcription , 2005, Science.
[33] M. Udvardi,et al. Global changes in transcription orchestrate metabolic differentiation during symbiotic nitrogen fixation in Lotus japonicus. , 2004, The Plant Journal.
[34] Bogumil J. Karas,et al. A Cytokinin Perception Mutant Colonized by Rhizobium in the Absence of Nodule Organogenesis , 2007, Science.
[35] S. Thirup,et al. LysM domains mediate lipochitin–oligosaccharide recognition and Nfr genes extend the symbiotic host range , 2007, The EMBO journal.
[36] H. Kouchi,et al. Transposition of a 600 thousand-year-old LTR retrotransposon in the model legume Lotus japonicus , 2008, Plant Molecular Biology.
[37] S. Tabata,et al. The Sulfate Transporter SST1 Is Crucial for Symbiotic Nitrogen Fixation in Lotus japonicus Root Nodules , 2005, The Plant Cell Online.
[38] Georg F. Weiller,et al. GeneBins: a database for classifying gene expression data, with application to plant genome arrays , 2007, BMC Bioinformatics.
[39] Satoshi Tabata,et al. Deregulation of a Ca2+/calmodulin-dependent kinase leads to spontaneous nodule development , 2006, Nature.
[40] J. F. Marsh,et al. Medicago truncatula NIN Is Essential for Rhizobial-Independent Nodule Organogenesis Induced by Autoactive Calcium/Calmodulin-Dependent Protein Kinase1 , 2007, Plant Physiology.
[41] B. Forde. Local and long-range signaling pathways regulating plant responses to nitrate. , 2002, Annual review of plant biology.
[42] H. Leung,et al. Characterizing rice lesion mimic mutants and identifying a mutant with broad-spectrum resistance to rice blast and bacterial blight. , 2000, Molecular plant-microbe interactions : MPMI.
[43] D. Inzé,et al. Serpin1 of Arabidopsis thaliana is a suicide inhibitor for metacaspase 9. , 2006, Journal of molecular biology.
[44] G. Stacey,et al. Extracellular ATP in Plants. Visualization, Localization, and Analysis of Physiological Significance in Growth and Signaling1[W] , 2006, Plant Physiology.
[45] G. Oldroyd,et al. Ethylene Inhibits the Nod Factor Signal Transduction Pathway of Medicago truncatula , 2001, The Plant Cell Online.
[46] Jean-Michel Ané,et al. OsIPD3, an ortholog of the Medicago truncatula DMI3 interacting protein IPD3, is required for mycorrhizal symbiosis in rice. , 2008, The New phytologist.
[47] Rafael A. Irizarry,et al. A Model-Based Background Adjustment for Oligonucleotide Expression Arrays , 2004 .
[48] G. Weiller,et al. A gene expression atlas of the model legume Medicago truncatula. , 2008, The Plant journal : for cell and molecular biology.
[49] K. Minamisawa,et al. Effects of ethylene precursor and inhibitors for ethylene biosynthesis and perception on nodulation in Lotus japonicus and Macroptilium atropurpureum. , 2000, Plant & cell physiology.
[50] C. Town,et al. Transcript Analysis of Early Nodulation Events in Medicago truncatula12[W] , 2005, Plant Physiology.
[51] M. Menges,et al. Arabidopsis CYCD3 D-type cyclins link cell proliferation and endocycles and are rate-limiting for cytokinin responses , 2007, Proceedings of the National Academy of Sciences.
[52] M. Stitt,et al. Genome-Wide Identification and Testing of Superior Reference Genes for Transcript Normalization in Arabidopsis1[w] , 2005, Plant Physiology.
[53] S. Tabata,et al. A receptor kinase gene of the LysM type is involved in legumeperception of rhizobial signals , 2003, Nature.
[54] J. Gouzy,et al. Expression Profiling in Medicago truncatula Identifies More Than 750 Genes Differentially Expressed during Nodulation, Including Many Potential Regulators of the Symbiotic Program1[w] , 2004, Plant Physiology.
[55] L. Hadwiger,et al. Molecular Characterization of Disease-Resistance Response Gene DRR206-d from Pisum sativum (L.) , 1995, Plant physiology.
[56] M. Navarro-Gochicoa,et al. Expression of the Apyrase-Like APY1 Genes in Roots ofMedicago truncatula Is Induced Rapidly and Transiently by Stress and Not by Sinorhizobium meliloti or Nod Factors1 , 2003, Plant Physiology.
[57] S. Tabata,et al. A nucleoporin is required for induction of Ca2+ spiking in legume nodule development and essential for rhizobial and fungal symbiosis. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[58] S. Tabata,et al. Plant recognition of symbiotic bacteria requires two LysM receptor-like kinases , 2003, Nature.
[59] P. Tillard,et al. The Arabidopsis NRT1.1 transporter participates in the signaling pathway triggering root colonization of nitrate-rich patches , 2006, Proceedings of the National Academy of Sciences.
[60] B. Roe,et al. Medicago truncatula DMI1 Required for Bacterial and Fungal Symbioses in Legumes , 2004, Science.
[61] B. Andrews,et al. Reverse recruitment: the Nup84 nuclear pore subcomplex mediates Rap1/Gcr1/Gcr2 transcriptional activation. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[62] A. Blöchl,et al. Arabidopsis endo-1,4-beta-glucanases are involved in the formation of root syncytia induced by Heterodera schachtii. , 2007, The Plant journal : for cell and molecular biology.
[63] Stefan R. Henz,et al. A gene expression map of Arabidopsis thaliana development , 2005, Nature Genetics.
[64] S. Tabata,et al. NUCLEOPORIN85 Is Required for Calcium Spiking, Fungal and Bacterial Symbioses, and Seed Production in Lotus japonicus , 2007, The Plant Cell Online.
[65] D. Shibata,et al. Large-scale analysis of gene expression profiles during early stages of root nodule formation in a model legume, Lotus japonicus. , 2004, DNA research : an international journal for rapid publication of reports on genes and genomes.
[66] Rafael A. Irizarry,et al. Bioinformatics and Computational Biology Solutions using R and Bioconductor , 2005 .
[67] S. Shaw,et al. Six nonnodulating plant mutants defective for Nod factor-induced transcriptional changes associated with the legume-rhizobia symbiosis. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[68] J. Downie,et al. Analysis of Nod-factor-induced calcium signaling in root hairs of symbiotically defective mutants of Lotus japonicus. , 2006, Molecular plant-microbe interactions : MPMI.
[69] H. Kouchi,et al. Transcriptome Profiling of Lotus japonicus Roots During Arbuscular Mycorrhiza Development and Comparison with that of Nodulation , 2007, DNA research : an international journal for rapid publication of reports on genes and genomes.
[70] J. F. Marsh,et al. Nodulation Signaling in Legumes Requires NSP2, a Member of the GRAS Family of Transcriptional Regulators , 2005, Science.
[71] K. Weis. Nucleocytoplasmic transport: cargo trafficking across the border. , 2002, Current opinion in cell biology.
[72] S. Akao,et al. The Lotus japonicus Sen1 gene controls rhizobial differentiation into nitrogen-fixing bacteroids in nodules , 2003, Molecular Genetics and Genomics.
[73] S. Schornack,et al. A novel nuclear protein interacts with the symbiotic DMI3 calcium- and calmodulin-dependent protein kinase of Medicago truncatula. , 2007, Molecular plant-microbe interactions : MPMI.
[74] J. Downie,et al. Coordinating nodule morphogenesis with rhizobial infection in legumes. , 2008, Annual review of plant biology.
[75] S. Tabata,et al. A Gain-of-Function Mutation in a Cytokinin Receptor Triggers Spontaneous Root Nodule Organogenesis , 2007, Science.
[76] S. Dinesh-Kumar,et al. The product of the tobacco mosaic virus resistance gene N: Similarity to toll and the interleukin-1 receptor , 1994, Cell.
[77] H. Kouchi,et al. cDNA macroarray analysis of gene expression in ineffective nodules induced on the Lotus japonicus sen1 mutant. , 2004, Molecular plant-microbe interactions : MPMI.