Evolutionary synthesis of analog networks

The significant increase in the available computational power that took place in recent decades has been accompanied by a growing interest in the application of the evolutionary approach to the synthesis of many kinds of systems and, in particular, to the synthesis of systems like analog electronic circuits, neural networks, and, more generally, autonomous systems, for which no satisfying systematic and general design methodology has been found to date. Despite some interesting results in the evolutionary synthesis of these kinds of systems, the endowment of an artificial evolutionary process with the potential for an appreciable increase of complexity of the systems thus generated appears still an open issue. In this thesis the problem of the evolutionary growth of complexity is addressed taking as starting point the insights contained in the published material reporting the unfinished work done in the late 1940s and early 1950s by John von Neumann on the theory of self-reproducing automata. The evolutionary complexity-growth conditions suggested in that work are complemented here with a series of auxiliary conditions inspired by what has been discovered since then relatively to the structure of biological systems, with a particular emphasis on the workings of genetic regulatory networks seen as the most elementary, full-fledged level of organization of existing living organisms. In this perspective, the first chapter is devoted to the formulation of the problem of the evolutionary growth of complexity, going from the description of von Neumann’s complexity-growth conditions to the specification of a set of auxiliary complexity-growth conditions derived from the analysis of the operation of genetic regulatory networks. This leads to the definition of a particular structure for the kind of systems that will be evolved and to the specification of the genetic representation for them. A system with the required structure – for which the name analog network is suggested – corresponds to a collection of devices whose terminals are connected by links characterized by a scalar value of interaction strength. One of the specificities of the evolutionary system defined in this thesis is the way these values of interaction strength are determined. This is done by associating with each device terminal of the evolving analog network a sequence of characters

[1]  S. B. Needleman,et al.  A general method applicable to the search for similarities in the amino acid sequence of two proteins. , 1970, Journal of molecular biology.

[2]  Edward M. McCreight,et al.  A Space-Economical Suffix Tree Construction Algorithm , 1976, JACM.

[3]  D. Gillespie,et al.  A Theorem for Physicists in the Theory of Random Variables. Addenda. , 1983 .

[4]  M S Waterman,et al.  Identification of common molecular subsequences. , 1981, Journal of molecular biology.

[5]  R. A. Raimi The First Digit Problem , 1976 .

[6]  B. Ripley,et al.  Pattern Recognition , 1968, Nature.

[7]  B. Gruenberg What Evolution Is , 1926 .

[8]  J. Schwartz,et al.  Theory of Self-Reproducing Automata , 1967 .

[9]  S. P. Lloyd,et al.  Least squares quantization in PCM , 1982, IEEE Trans. Inf. Theory.

[10]  M Conrad,et al.  Information processing in molecular systems. , 1972, Currents in modern biology.

[11]  L. M. M.-T. Theory of Probability , 1929, Nature.

[12]  Joel Max,et al.  Quantizing for minimum distortion , 1960, IRE Trans. Inf. Theory.

[13]  R. Laing Automaton models of reproduction by self-inspection. , 1977, Journal of theoretical biology.

[14]  A. Holmes-Siedle,et al.  Semiconductor Devices , 1976, 2018 International Semiconductor Conference (CAS).

[15]  Karl Raimund Sir Popper,et al.  Quantum theory and the schism in physics , 1982 .

[16]  R. W. Hamming,et al.  On the distribution of numbers , 1970, Bell Syst. Tech. J..

[17]  Bernard M. Smith Instantaneous companding of quantized signals , 1957 .

[18]  Alexander V. Trushkin Sufficient conditions for uniqueness of a locally optimal quantizer for a class of convex error weighting functions , 1982, IEEE Trans. Inf. Theory.

[19]  Allen Gersho,et al.  Theory of an Adaptive Quantizer , 1973, IEEE Trans. Commun..

[20]  P. F. Panter,et al.  Quantization distortion in pulse-count modulation with nonuniform spacing of levels , 1951, Proceedings of the IRE.

[21]  Earl E. Swartzlander,et al.  The Sign/Logarithm Number System , 1975, IEEE Transactions on Computers.

[22]  M. Polanyi Life's irreducible structure. Live mechanisms and information in DNA are boundary conditions with a sequence of boundaries above them. , 1968, Science.

[23]  Dr. Susumu Ohno Evolution by Gene Duplication , 1970, Springer Berlin Heidelberg.

[24]  G. Bateson,et al.  Mind and Nature , 1980 .

[25]  Saleem A. Kassam Absolute-Error Criterion , 1978 .

[26]  Grace Jordison Molecular Biology of the Gene , 1965, The Yale Journal of Biology and Medicine.