Massive single-cell RNA-seq analysis and imputation via deep learning
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Qionghai Dai | Yue Deng | Feng Bao | Lani F. Wu | Steven J. Altschuler | Lani F. Wu | S. Altschuler | Qionghai Dai | Yue Deng | Feng Bao
[1] Bo Wang,et al. Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning , 2016, Nature Methods.
[2] Mingfeng Li,et al. Early emergence of cortical interneuron diversity in the mouse embryo , 2018, Science.
[3] Richard A. Muscat,et al. Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding , 2018, Science.
[4] Aleksandra A. Kolodziejczyk,et al. The technology and biology of single-cell RNA sequencing. , 2015, Molecular cell.
[5] P. Kharchenko,et al. Bayesian approach to single-cell differential expression analysis , 2014, Nature Methods.
[6] Rona S. Gertner,et al. Single cell RNA Seq reveals dynamic paracrine control of cellular variation , 2014, Nature.
[7] H. Swerdlow,et al. Large-scale simultaneous measurement of epitopes and transcriptomes in single cells , 2017, Nature Methods.
[8] T. Caliński,et al. A dendrite method for cluster analysis , 1974 .
[9] S. Dudoit,et al. A general and flexible method for signal extraction from single-cell RNA-seq data , 2018, Nature Communications.
[10] Nir Yosef,et al. Bayesian Inference for a Generative Model of Transcriptome Profiles from Single-cell RNA Sequencing , 2018, bioRxiv.
[11] M. Eisenstein. Startups use short-read data to expand long-read sequencing market , 2015, Nature Biotechnology.
[12] P. Reddien,et al. Fundamentals of planarian regeneration. , 2004, Annual review of cell and developmental biology.
[13] M. Cugmas,et al. On comparing partitions , 2015 .
[14] A. Regev,et al. Efficient Generation of Transcriptomic Profiles by Random Composite Measurements , 2017, Cell.
[15] William M. Rand,et al. Objective Criteria for the Evaluation of Clustering Methods , 1971 .
[16] R. Masland,et al. The Major Cell Populations of the Mouse Retina , 1998, The Journal of Neuroscience.
[17] S. Orkin,et al. Mapping the Mouse Cell Atlas by Microwell-Seq , 2018, Cell.
[18] W. Koh,et al. Single-cell genome sequencing: current state of the science , 2016, Nature Reviews Genetics.
[19] Fabian J. Theis,et al. Single-cell RNA-seq denoising using a deep count autoencoder , 2018, Nature Communications.
[20] A. Oshlack,et al. Splatter: simulation of single-cell RNA sequencing data , 2017, Genome Biology.
[21] Yarden Katz,et al. A single-cell survey of the small intestinal epithelium , 2017, Nature.
[22] Sean C. Bendall,et al. Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis , 2015, Cell.
[23] M. Schaub,et al. SC3 - consensus clustering of single-cell RNA-Seq data , 2016, Nature Methods.
[24] Yoshua. Bengio,et al. Learning Deep Architectures for AI , 2007, Found. Trends Mach. Learn..
[25] E. Pierson,et al. ZIFA: Dimensionality reduction for zero-inflated single-cell gene expression analysis , 2015, Genome Biology.
[26] Kevin R. Moon,et al. Recovering Gene Interactions from Single-Cell Data Using Data Diffusion , 2018, Cell.
[27] Grace X. Y. Zheng,et al. Massively parallel digital transcriptional profiling of single cells , 2016, Nature Communications.
[28] C. Wijmenga,et al. Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes. , 2006, American journal of human genetics.
[29] A. Saliba,et al. Single-cell RNA-seq: advances and future challenges , 2014, Nucleic acids research.
[30] Evan Z. Macosko,et al. Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets , 2015, Cell.
[31] Paul Hoffman,et al. Integrating single-cell transcriptomic data across different conditions, technologies, and species , 2018, Nature Biotechnology.
[32] Pascal Vincent,et al. Stacked Denoising Autoencoders: Learning Useful Representations in a Deep Network with a Local Denoising Criterion , 2010, J. Mach. Learn. Res..
[33] Jimmy Ba,et al. Adam: A Method for Stochastic Optimization , 2014, ICLR.
[34] Staci A. Sorensen,et al. Adult Mouse Cortical Cell Taxonomy Revealed by Single Cell Transcriptomics , 2016 .