Global properties of biological networks.
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[1] A. Rapoport,et al. Connectivity of random nets , 1951 .
[2] Sharon L. Milgram,et al. The Small World Problem , 1967 .
[3] E. Koonin,et al. A minimal gene set for cellular life derived by comparison of complete bacterial genomes. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[4] Duncan J. Watts,et al. Collective dynamics of ‘small-world’ networks , 1998, Nature.
[5] Ronald W. Davis,et al. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. , 1999, Science.
[6] Kei-Hoi Cheung,et al. Large-scale analysis of the yeast genome by transposon tagging and gene disruption , 1999, Nature.
[7] Albert,et al. Emergence of scaling in random networks , 1999, Science.
[8] J. Hopfield,et al. From molecular to modular cell biology , 1999, Nature.
[9] H E Stanley,et al. Classes of small-world networks. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[10] James R. Knight,et al. A comprehensive analysis of protein–protein interactions in Saccharomyces cerevisiae , 2000, Nature.
[11] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[12] Albert-László Barabási,et al. Error and attack tolerance of complex networks , 2000, Nature.
[13] R. Albert,et al. The large-scale organization of metabolic networks , 2000, Nature.
[14] S. Teichmann,et al. Domain combinations in archaeal, eubacterial and eukaryotic proteomes. , 2001, Journal of molecular biology.
[15] J. J. Fox,et al. From topology to dynamics in biochemical networks. , 2001, Chaos.
[16] Sarah A. Teichmann,et al. An insight into domain combinations , 2001, ISMB.
[17] Derek Raine,et al. Network Structure of Metabolic Pathways , 2001 .
[18] A. Barabasi,et al. Lethality and centrality in protein networks , 2001, Nature.
[19] S. Wuchty. Scale-free behavior in protein domain networks. , 2001, Molecular biology and evolution.
[20] D. Fell,et al. The small world inside large metabolic networks , 2000, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[21] D. Bredesen,et al. Mining DNA microarray data using a novel approach based on graph theory , 2001, FEBS letters.
[22] Jong H. Park,et al. Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast. , 2001, Journal of molecular biology.
[23] J. Wojcik,et al. The protein–protein interaction map of Helicobacter pylori , 2001, Nature.
[24] M. Gerstein,et al. Protein family and fold occurrence in genomes: power-law behaviour and evolutionary model. , 2001, Journal of molecular biology.
[25] A. Wagner. The yeast protein interaction network evolves rapidly and contains few redundant duplicate genes. , 2001, Molecular biology and evolution.
[26] B. Snel,et al. The identification of functional modules from the genomic association of genes , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[27] K. Sneppen,et al. Specificity and Stability in Topology of Protein Networks , 2002, Science.
[28] C. DeLisi,et al. The society of genes: networks of functional links between genes from comparative genomics , 2002, Genome Biology.
[29] M Karplus,et al. Small-world view of the amino acids that play a key role in protein folding. , 2002, Physical review. E, Statistical, nonlinear, and soft matter physics.
[30] Eugene I Shakhnovich,et al. Expanding protein universe and its origin from the biological Big Bang , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[31] Thomas Pfeiffer,et al. Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae , 2002, Bioinform..
[32] S. Shen-Orr,et al. Network motifs: simple building blocks of complex networks. , 2002, Science.
[33] E. Koonin,et al. The structure of the protein universe and genome evolution , 2002, Nature.
[34] John D Lambris,et al. Bioactive components in milk , 2002, Current opinion in clinical nutrition and metabolic care.
[35] D. Featherstone,et al. Wrestling with pleiotropy: genomic and topological analysis of the yeast gene expression network. , 2002, BioEssays : news and reviews in molecular, cellular and developmental biology.
[36] Jie Wu,et al. Small Worlds: The Dynamics of Networks between Order and Randomness , 2003 .
[37] Stefan Wuchty,et al. Interaction and domain networks of yeast , 2002, Proteomics.
[38] Hawoong Jeong,et al. Classification of scale-free networks , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[39] J. Doye. Network topology of a potential energy landscape: a static scale-free network. , 2002, Physical review letters.
[40] A. Wagner. How the global structure of protein interaction networks evolves , 2002, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[41] An-Ping Zeng,et al. The Connectivity Structure, Giant Strong Component and Centrality of Metabolic Networks , 2003, Bioinform..
[42] S. Bortoluzzi,et al. Disease genes and intracellular protein networks. , 2003, Physiological genomics.
[43] A. Barabasi,et al. The topology of the transcription regulatory network in the yeast , 2002, cond-mat/0205181.
[44] R. Milo,et al. Subgraphs in random networks. , 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.
[45] L. Mirny,et al. Protein complexes and functional modules in molecular networks , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[46] D. Goldberg,et al. Assessing experimentally derived interactions in a small world , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[47] Victoria A. Higman,et al. Uncovering network systems within protein structures. , 2003, Journal of molecular biology.
[48] P. Cluzel,et al. A natural class of robust networks , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[49] E. Levanon,et al. Preferential attachment in the protein network evolution. , 2003, Physical review letters.
[50] An Exact Model of Fluctuations in Gene Expression , 2004, q-bio/0402021.
[51] Erich Bornberg-Bauer,et al. Convergent evolution of gene networks by single‐gene duplications in higher eukaryotes , 2004, EMBO reports.
[52] M. Gerstein,et al. Structure and evolution of transcriptional regulatory networks. , 2004, Current opinion in structural biology.
[53] A. Atilgan,et al. Small-world communication of residues and significance for protein dynamics. , 2003, Biophysical journal.
[54] Igor Jurisica,et al. Modeling interactome: scale-free or geometric? , 2004, Bioinform..
[55] A. Barabasi,et al. Functional and topological characterization of protein interaction networks , 2004, Proteomics.
[56] Michael Griffin,et al. Gene co-expression network topology provides a framework for molecular characterization of cellular state , 2004, Bioinform..
[57] Masanori Arita. The metabolic world of Escherichia coli is not small. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[58] Richard Morphy,et al. From magic bullets to designed multiple ligands. , 2004, Drug discovery today.
[59] E. Koonin,et al. Conservation and coevolution in the scale-free human gene coexpression network. , 2004, Molecular biology and evolution.
[60] P. Csermely. Strong links are important, but weak links stabilize them. , 2004, Trends in biochemical sciences.
[61] M. Giuffrida,et al. The proteomic approach to analysis of human milk fat globule membrane. , 2004, Clinica chimica acta; international journal of clinical chemistry.
[62] S. Wuchty. Evolution and topology in the yeast protein interaction network. , 2004, Genome research.
[63] Lan V. Zhang,et al. Evidence for dynamically organized modularity in the yeast protein–protein interaction network , 2004, Nature.
[64] L. Holm,et al. Unraveling protein interaction networks with near-optimal efficiency , 2004, Nature Biotechnology.
[65] Kevin E. Bassler,et al. Network dynamics: Jamming is limited in scale-free systems , 2004, Nature.
[66] Marcus Kaiser,et al. Edge vulnerability in neural and metabolic networks , 2004, Biological Cybernetics.
[67] B. Snel,et al. The yeast coexpression network has a small‐world, scale‐free architecture and can be explained by a simple model , 2004, EMBO reports.
[68] Ariel Fernández,et al. The nonconserved wrapping of conserved protein folds reveals a trend toward increasing connectivity in proteomic networks. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[69] Global Topological Study of the Protein-protein Interaction Networks , 2004, q-bio/0402027.
[70] F. Rao,et al. The protein folding network. , 2004, Journal of molecular biology.
[71] Victor Kunin,et al. Functional evolution of the yeast protein interaction network. , 2004, Molecular biology and evolution.
[72] M. Tyers,et al. From large networks to small molecules. , 2004, Current opinion in chemical biology.