Structure of the transporter associated with antigen processing trapped by herpes simplex virus
暂无分享,去创建一个
[1] T. Eyck,et al. Efficient structure-factor calculation for large molecules by the fast Fourier transform , 1977 .
[2] G. Murshudov,et al. Refinement of macromolecular structures by the maximum-likelihood method. , 1997, Acta crystallographica. Section D, Biological crystallography.
[3] D. Wiley,et al. Identification of domain boundaries within the N‐termini of TAP1 and TAP2 and their importance in tapasin binding and tapasin‐mediated increase in peptide loading of MHC class I , 2005, Immunology and cell biology.
[4] J. Neefjes,et al. Peptide size selection by the major histocompatibility complex-encoded peptide transporter , 1994, The Journal of experimental medicine.
[5] N. Grigorieff,et al. Optimal noise reduction in 3D reconstructions of single particles using a volume-normalized filter. , 2012, Journal of structural biology.
[6] R. Demars,et al. A gene in the human major histocompatibility complex class II region controlling the class I antigen presentation pathway , 1990, Nature.
[7] A. Steven,et al. One number does not fit all: mapping local variations in resolution in cryo-EM reconstructions. , 2013, Journal of structural biology.
[8] I. Wilson,et al. Crystal structures of two rat MHC class Ia (RT1-A) molecules that are associated differentially with peptide transporter alleles TAP-A and TAP-B. , 2002, Journal of molecular biology.
[9] Sjors H. W. Scheres,et al. An atomic structure of human γ-secretase , 2015, Nature.
[10] Günter J. Hämmerling,et al. Selectivity of MHC-encoded peptide transporters from human, mouse and rat , 1994, Nature.
[11] Ben M. Webb,et al. Comparative Protein Structure Modeling Using MODELLER , 2007, Current protocols in protein science.
[12] N Grigorieff,et al. Three-dimensional structure of bovine NADH:ubiquinone oxidoreductase (complex I) at 22 A in ice. , 1998, Journal of molecular biology.
[13] P. A. Peterson,et al. Molecular mechanism and species specificity of TAP inhibition by herpes simplex virus ICP47. , 1996, The EMBO journal.
[14] J. Yewdell,et al. Herpes simplex virus turns off the TAP to evade host immunity , 1995, Nature.
[15] R. Obst,et al. Analysis of the fine specificity of rat, mouse and human TAP peptide transporters , 1995, European journal of immunology.
[16] N. Grigorieff,et al. Quantitative characterization of electron detectors for transmission electron microscopy. , 2013, Journal of structural biology.
[17] D. Y. Lin,et al. Crystal structures of a polypeptide processing and secretion transporter , 2015, Nature.
[18] K. Früh,et al. A point mutation in the human transporter associated with antigen processing (TAP2) alters the peptide transport specificity , 1996, European journal of immunology.
[19] S. Beck,et al. Sequences encoded in the class II region of the MHC related to the 'ABC' superfamily of transporters , 1990, Nature.
[20] J. Monaco,et al. Transport protein genes in the murine MHC: possible implications for antigen processing. , 1990, Science.
[21] S. Tonegawa,et al. Peptide length and sequence specificity of the mouse TAP1/TAP2 translocator , 1994, The Journal of experimental medicine.
[22] Conrad C. Huang,et al. UCSF Chimera—A visualization system for exploratory research and analysis , 2004, J. Comput. Chem..
[23] F. Momburg,et al. O496 - Residues in TAP peptide transporters controlling substrate specificity , 1996 .
[24] D. Andrews,et al. A cytosolic herpes simplex virus protein inhibits antigen presentation to CD8+ T lymphocytes , 1994, Cell.
[25] D. R. Madden,et al. Identification of self peptides bound to purified HLA-B27 , 1991, Nature.
[26] P. Cresswell,et al. Human transporters associated with antigen processing possess a promiscuous peptide-binding site. , 1994, Immunity.
[27] J. Monaco,et al. MHC class II region encoding proteins related to the muKidrug resistance family of transmembrane transporters , 1990, Nature.
[28] Rachelle Gaudet,et al. Structure of the ABC ATPase domain of human TAP1, the transporter associated with antigen processing , 2001, The EMBO journal.
[29] A. Barr,et al. Structures of ABCB10, a human ATP-binding cassette transporter in apo- and nucleotide-bound states , 2013, Proceedings of the National Academy of Sciences.
[30] C. Harding,et al. Pathways of antigen processing. , 1991, Current opinion in immunology.
[31] P. Emsley,et al. Features and development of Coot , 2010, Acta crystallographica. Section D, Biological crystallography.
[32] J. Drijfhout,et al. Inhibition of mouse TAP by immune evasion molecules encoded by non-murine herpesviruses. , 2011, Molecular immunology.
[33] A Leith,et al. SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields. , 1996, Journal of structural biology.
[34] Garib N. Murshudov,et al. Conformation-independent structural comparison of macromolecules with ProSMART , 2014, Acta crystallographica. Section D, Biological crystallography.
[35] R. F. Cook,et al. The Active Site of ICP47, a Herpes Simplex Virus–encoded Inhibitor of the Major Histocompatibility Complex (MHC)-encoded Peptide Transporter Associated with Antigen Processing (TAP), Maps to the NH2-terminal 35 Residues , 1997, The Journal of experimental medicine.
[36] M. Nijenhuis,et al. Multiple regions of the transporter associated with antigen processing (TAP) contribute to its peptide binding site. , 1996, Journal of immunology.
[37] H. Rammensee,et al. SYFPEITHI: database for MHC ligands and peptide motifs , 1999, Immunogenetics.
[38] R. Henderson,et al. Detective quantum efficiency of electron area detectors in electron microscopy , 2009, Ultramicroscopy.
[39] Marcus A. Brubaker,et al. Alignment of cryo-EM movies of individual particles by optimization of image translations. , 2014, Journal of structural biology.
[40] I. Pogozheva,et al. Use of Functional Polymorphisms To Elucidate the Peptide Binding Site of TAP Complexes , 2015, The Journal of Immunology.
[41] David N Mastronarde,et al. Automated electron microscope tomography using robust prediction of specimen movements. , 2005, Journal of structural biology.
[42] O. Jardetzky,et al. Simple Allosteric Model for Membrane Pumps , 1966, Nature.
[43] Randy J. Read,et al. Overview of the CCP4 suite and current developments , 2011, Acta crystallographica. Section D, Biological crystallography.
[44] F. Momburg,et al. Residues in TAP2 peptide transporters controlling substrate specificity. , 1996, Journal of immunology.
[45] T. Walz,et al. A mechanism of viral immune evasion revealed by cryo-EM analysis of the TAP transporter , 2015, Nature.
[46] A Sette,et al. The peptide-binding motif for the human transporter associated with antigen processing , 1995, The Journal of experimental medicine.
[47] R. Henderson,et al. Characterization of peptides bound to the class I MHC molecule HLA-A2.1 by mass spectrometry. , 1992, Science.
[48] J. Howard,et al. Functional analysis by site-directed mutagenesis of the complex polymorphism in rat transporter associated with antigen processing. , 1998, Journal of immunology.
[49] R. Tampé,et al. Direct evidence that the N-terminal extensions of the TAP complex act as autonomous interaction scaffolds for the assembly of the MHC I peptide-loading complex , 2012, Cellular and Molecular Life Sciences.
[50] H. Rammensee,et al. Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules , 1991, Nature.
[51] D. Andrews,et al. Stable binding of the herpes simplex virus ICP47 protein to the peptide binding site of TAP. , 1996, The EMBO journal.
[52] D. Agard,et al. Electron counting and beam-induced motion correction enable near atomic resolution single particle cryoEM , 2013, Nature Methods.
[53] R. Read,et al. The crystal structure of pertussis toxin. , 1994, Structure.
[54] H. Ploegh,et al. Inhibition of Major Histocompatibility Complex Class I Antigen Presentation in Pig and Primate Cells by Herpes Simplex Virus Type 1 and 2 ICP47 , 1998, Journal of Virology.
[55] R. Tampé,et al. Assembly and Function of the Major Histocompatibility Complex (MHC) I Peptide-loading Complex Are Conserved Across Higher Vertebrates* , 2014, The Journal of Biological Chemistry.
[56] Nir London,et al. The structural basis of peptide-protein binding strategies. , 2010, Structure.
[57] Alan Brown,et al. Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructions , 2015, Acta crystallographica. Section D, Biological crystallography.
[58] R. Tampé,et al. The active domain of the herpes simplex virus protein ICP47: a potent inhibitor of the transporter associated with antigen processing. , 1997, Journal of molecular biology.
[59] Wen Jiang,et al. EMAN2: an extensible image processing suite for electron microscopy. , 2007, Journal of structural biology.
[60] N Grigorieff,et al. Frealign: An Exploratory Tool for Single-Particle Cryo-EM. , 2016, Methods in enzymology.
[61] S. Iwata,et al. Structure of an antibacterial peptide ATP-binding cassette transporter in a novel outward occluded state , 2014, Proceedings of the National Academy of Sciences.
[62] Nikolaus Grigorieff,et al. Measuring the optimal exposure for single particle cryo-EM using a 2.6 Å reconstruction of rotavirus VP6 , 2015, eLife.
[63] W. Delano. The PyMOL Molecular Graphics System , 2002 .
[64] J. Neefjes,et al. Selective and ATP-dependent translocation of peptides by the MHC-encoded transporter. , 1993, Science.
[65] N. Grigorieff,et al. CTFFIND4: Fast and accurate defocus estimation from electron micrographs , 2015, bioRxiv.
[66] P. A. Peterson,et al. A viral inhibitor of peptide transporters for antigen presentation , 1995, Nature.
[67] S. Tonegawa,et al. TAP1-dependent peptide translocation in vitro is ATP dependent and peptide selective , 1993, Cell.
[68] Ben M. Webb,et al. Comparative Protein Structure Modeling Using MODELLER , 2016, Current protocols in bioinformatics.
[69] Randy J. Read,et al. Acta Crystallographica Section D Biological , 2003 .
[70] Jue Chen,et al. Crystal structure of the multidrug transporter P-glycoprotein from Caenorhabditis elegans , 2012 .
[71] Sjors H.W. Scheres,et al. RELION: Implementation of a Bayesian approach to cryo-EM structure determination , 2012, Journal of structural biology.
[72] C. Robinson,et al. Structural and Functional Basis for Lipid Synergy on the Activity of the Antibacterial Peptide ABC Transporter McjD* , 2016, The Journal of Biological Chemistry.