MetFish: A Metabolomics Platform for Studying Microbial Communities in Chemically Extreme Environments
暂无分享,去创建一个
Sneha P. Couvillion | Ronald J. Moore | J. Jansson | T. Metz | N. Isern | V. Bailey | R. Zhao | Ryan L. Sontag | M. Romine | P. Mouser | S. Lindemann | Y. Maezato | Chengdong Xu | T. Chowdhury | Beau R Morton | J. Fredrickson
[1] Sterner,et al. Signal suppression in electrospray ionization Fourier transform mass spectrometry of multi-component samples , 2000, Journal of mass spectrometry : JMS.
[2] Liang Li,et al. Chemical Isotope Labeling LC-MS for High Coverage and Quantitative Profiling of the Hydroxyl Submetabolome in Metabolomics. , 2016, Analytical chemistry.
[3] Erin E. Carlson,et al. Chemoselective probes for metabolite enrichment and profiling , 2007, Nature Methods.
[4] J. Bérdy. Bioactive Microbial Metabolites , 2005, The Journal of Antibiotics.
[5] T. Olah,et al. The effects of sample preparation methods on the variability of the electrospray ionization response for model drug compounds. , 1999, Rapid communications in mass spectrometry : RCM.
[6] T. Craddock,et al. Cooperation and competition shape ecological resistance during periodic spatial disturbance of engineered bacteria , 2017, Scientific Reports.
[7] G. Siuzdak,et al. Innovation: Metabolomics: the apogee of the omics trilogy , 2012, Nature Reviews Molecular Cell Biology.
[8] J. Fredrickson,et al. Integrating Ecological and Engineering Concepts of Resilience in Microbial Communities , 2015, Front. Microbiol..
[9] Timothy Olah,et al. Mechanistic investigation of ionization suppression in electrospray ionization , 2000, Journal of the American Society for Mass Spectrometry.
[10] L. Paša-Tolić,et al. Decreased abundance of type III secretion system-inducing signals in Arabidopsis mkp1 enhances resistance against Pseudomonas syringae , 2014, Proceedings of the National Academy of Sciences.
[11] Allan Konopka,et al. Dynamics in microbial communities: unraveling mechanisms to identify principles , 2014, The ISME Journal.
[12] S. Young,et al. Mass spectrometry captures off-target drug binding and provides mechanistic insights into the human metalloprotease ZMPSTE24 , 2016, Nature chemistry.
[13] Joanne K. Liu,et al. Networks of energetic and metabolic interactions define dynamics in microbial communities , 2015, Proceedings of the National Academy of Sciences.
[14] M. Mann,et al. Electrospray ionization for mass spectrometry of large biomolecules. , 1989, Science.
[15] B. Shen,et al. Discovery of the leinamycin family of natural products by mining actinobacterial genomes , 2017, Proceedings of the National Academy of Sciences.
[16] Liang Li,et al. High-performance isotope labeling for profiling carboxylic acid-containing metabolites in biofluids by mass spectrometry. , 2010, Analytical chemistry.
[17] James K Fredrickson,et al. Ecological communities by design , 2015, Science.
[18] S. Kain,et al. Growth of wildtype and mutant E. coli strains in minimal media for optimal production of nucleic acids for preparing labeled nucleotides , 2010, Applied Microbiology and Biotechnology.
[19] A. Harvey,et al. The re-emergence of natural products for drug discovery in the genomics era , 2015, Nature Reviews Drug Discovery.
[20] P. Brookes,et al. AN EXTRACTION METHOD FOR MEASURING SOIL MICROBIAL BIOMASS C , 1987 .
[21] C. Gros,et al. Study of the dansylation reaction of amino acids, peptides and proteins. , 2005, European journal of biochemistry.
[22] Pieter C Dorrestein,et al. Microbial metabolic exchange--the chemotype-to-phenotype link. , 2011, Nature chemical biology.
[23] D. Pompliano,et al. Drugs for bad bugs: confronting the challenges of antibacterial discovery , 2007, Nature Reviews Drug Discovery.
[24] Vincent J. Denef,et al. AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature , 2010, The ISME Journal.
[25] T. Metz,et al. Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions , 2014, Front. Microbiol..
[26] Andrew H. Thompson,et al. Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS. , 2003, Analytical chemistry.
[27] T. Fan,et al. A carbonyl capture approach for profiling oxidized metabolites in cell extracts , 2012, Metabolomics.
[28] P. Bednarek. Chemical warfare or modulators of defence responses - the function of secondary metabolites in plant immunity. , 2012, Current opinion in plant biology.
[29] Ruedi Aebersold,et al. Mass-spectrometric exploration of proteome structure and function , 2016, Nature.
[30] K. Zengler,et al. Tapping into microbial diversity , 2004, Nature Reviews Microbiology.
[31] P. Brookes,et al. Chloroform fumigation and the release of soil nitrogen: A rapid direct extraction method to measure microbial biomass nitrogen in soil , 1985 .
[32] Zhili He,et al. Biodiversity and species competition regulate the resilience of microbial biofilm community , 2017, Molecular ecology.
[33] D. J. Ross,et al. A DIRECT EXTRACTION METHOD TO ESTIMATE SOIL MICROBIAL C: EFFECTS OF EXPERIMENTAL VARIABLES AND SOME DIFFERENT CALIBRATION PROCEDURES , 1988 .
[34] Brian J. Bennett,et al. Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease , 2011, Nature.
[35] S. Tringe,et al. The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling , 2013, Front. Microbiol..
[36] P. Brookes,et al. Microbial biomass measurements in forest soils: The use of the chloroform fumigation-incubation method in strongly acid soils , 1987 .
[37] James J Collins,et al. Syntrophic exchange in synthetic microbial communities , 2014, Proceedings of the National Academy of Sciences.
[38] Stephen R. Lindemann,et al. Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated ‘Omics Approach , 2017, Front. Microbiol..
[39] Liang Li,et al. Differential 12C-/13C-isotope dansylation labeling and fast liquid chromatography/mass spectrometry for absolute and relative quantification of the metabolome. , 2009, Analytical chemistry.
[40] János Bérdy,et al. Bioactive microbial metabolites. , 2005, The Journal of antibiotics.
[41] Liang Li,et al. Development of High-Performance Chemical Isotope Labeling LC-MS for Profiling the Carbonyl Submetabolome. , 2017, Analytical chemistry.
[42] Ye Deng,et al. Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community , 2010, The ISME Journal.
[43] David S. Wishart,et al. ECMDB 2.0: A richer resource for understanding the biochemistry of E. coli , 2015, Nucleic Acids Res..
[44] G. Siuzdak,et al. The Expanding Role of Mass Spectrometry in Metabolite Profiling and Characterization , 2005, Chembiochem : a European journal of chemical biology.
[45] L. Putignani,et al. The Role of Mass Spectrometry in the “Omics” Era , 2013, Current organic chemistry.
[46] B. Kuster,et al. Mass-spectrometry-based draft of the human proteome , 2014, Nature.
[47] O. Menyailo,et al. Solubility of the labile forms of soil carbon and nitrogen in K2SO4 of different concentrations , 2013, Eurasian Soil Science.
[48] M. Bowden,et al. Geo- and biogeochemical processes in a heliothermal hypersaline lake , 2016 .