Long non-coding RNAs: spatial amplifiers that control nuclear structure and gene expression
暂无分享,去创建一个
[1] A. Lamond,et al. Nuclear speckles. , 2011, Cold Spring Harbor perspectives in biology.
[2] Hengbin Wang,et al. Role of Histone H3 Lysine 27 Methylation in X Inactivation , 2003, Science.
[3] J. Komorowski,et al. Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation. , 2008, Molecular cell.
[4] A. Mayeda,et al. Identification of cis- and trans-acting factors involved in the localization of MALAT-1 noncoding RNA to nuclear speckles. , 2012, RNA.
[5] Yutaka Suzuki,et al. Long noncoding RNA NEAT1-dependent SFPQ relocation from promoter region to paraspeckle mediates IL8 expression upon immune stimuli. , 2014, Molecular cell.
[6] E. Lander,et al. The Xist lncRNA Exploits Three-Dimensional Genome Architecture to Spread Across the X Chromosome , 2013, Science.
[7] F. O. Fackelmayer,et al. Nucleic-acid-binding properties of hnRNP-U/SAF-A, a nuclear-matrix protein which binds DNA and RNA in vivo and in vitro. , 1994, European journal of biochemistry.
[8] D. Reinberg,et al. Jarid2 Is Implicated in the Initial Xist-Induced Targeting of PRC2 to the Inactive X Chromosome. , 2014, Molecular cell.
[9] B. Chadwick,et al. Two novel DXZ4-associated long noncoding RNAs show developmental changes in expression coincident with heterochromatin formation at the human (Homo sapiens) macrosatellite repeat , 2015, Chromosome Research.
[10] A. Belmont,et al. The facultative heterochromatin of the inactive X chromosome has a distinctive condensed ultrastructure , 2008, Journal of Cell Science.
[11] R. Jaenisch,et al. A 450 kb Transgene Displays Properties of the Mammalian X-Inactivation Center , 1996, Cell.
[12] D. Spector,et al. Direct Visualization of the Co-transcriptional Assembly of a Nuclear Body by Noncoding RNAs , 2010, Nature Cell Biology.
[13] Neva C. Durand,et al. Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture , 2016, Proceedings of the National Academy of Sciences.
[14] Yonghao Yu,et al. The LC Domain of hnRNPA2 Adopts Similar Conformations in Hydrogel Polymers, Liquid-like Droplets, and Nuclei , 2015, Cell.
[15] G. Elgar,et al. Rsx is a metatherian RNA with Xist-like properties in X-chromosome inactivation , 2012, Nature.
[16] A. Rump,et al. A misplaced lncRNA causes brachydactyly in humans. , 2012, The Journal of clinical investigation.
[17] Michael Y Tolstorukov,et al. The long noncoding RNAs NEAT1 and MALAT1 bind active chromatin sites. , 2014, Molecular cell.
[18] Siddharth S. Dey,et al. Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells , 2015, Cell.
[19] Jennifer A. Mitchell,et al. The Air Noncoding RNA Epigenetically Silences Transcription by Targeting G9a to Chromatin , 2008, Science.
[20] Howard Y. Chang,et al. Revealing long noncoding RNA architecture and functions using domain-specific chromatin isolation by RNA purification , 2014, Nature Biotechnology.
[21] Jeannie T. Lee,et al. Chromosomes. A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation. , 2015, Science.
[22] R. Shiekhattar,et al. Activating RNAs associate with Mediator to enhance chromatin architecture and transcription , 2013, Nature.
[23] T. Magnuson,et al. The Polycomb Group Protein EED Is Dispensable for the Initiation of Random X-Chromosome Inactivation , 2006, PLoS genetics.
[24] J. Lawrence,et al. Molecular anatomy of a speckle. , 2006, The anatomical record. Part A, Discoveries in molecular, cellular, and evolutionary biology.
[25] David R. Kelley,et al. Long noncoding RNAs regulate adipogenesis , 2013, Proceedings of the National Academy of Sciences.
[26] J. Rinn,et al. lincRNAs act in the circuitry controlling pluripotency and differentiation , 2011, Nature.
[27] Miki Ebisuya,et al. Ripples from neighbouring transcription , 2008, Nature Cell Biology.
[28] Samie R. Jaffrey,et al. m6A RNA methylation promotes XIST-mediated transcriptional repression , 2016, Nature.
[29] W. V. van IJcken,et al. The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on Xist RNA. , 2011, Genes & development.
[30] Chromosomes. A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation. , 2015, Science.
[31] Neil J McKenna,et al. A Steroid Receptor Coactivator, SRA, Functions as an RNA and Is Present in an SRC-1 Complex , 1999, Cell.
[32] J. Rinn,et al. Multiplexable, locus-specific targeting of long RNAs with CRISPR-Display , 2015, Nature Methods.
[33] A. Wutz. Gene silencing in X-chromosome inactivation: advances in understanding facultative heterochromatin formation , 2011, Nature Reviews Genetics.
[34] Peter Fraser,et al. Kcnq1ot1/Lit1 Noncoding RNA Mediates Transcriptional Silencing by Targeting to the Perinucleolar Region , 2008, Molecular and Cellular Biology.
[35] Ho-Ryun Chung,et al. High-Affinity Sites Form an Interaction Network to Facilitate Spreading of the MSL Complex across the X Chromosome in Drosophila. , 2015, Molecular cell.
[36] J. Mcneil,et al. XIST RNA paints the inactive X chromosome at interphase: evidence for a novel RNA involved in nuclear/chromosome structure , 1996, The Journal of cell biology.
[37] R. Shiekhattar,et al. A core SMRT corepressor complex containing HDAC3 and TBL1, a WD40-repeat protein linked to deafness. , 2000, Genes & development.
[38] D. Agard,et al. Chromosome elasticity and mitotic polar ejection force measured in living Drosophila embryos by four-dimensional microscopy-based motion analysis , 2001, Current Biology.
[39] B. Turner,et al. X-Inactivation and histone H4 acetylation in embryonic stem cells. , 1996, Developmental biology.
[40] Y. Y. Shevelyov,et al. The nuclear lamina as a gene-silencing hub. , 2012, Current issues in molecular biology.
[41] K. Rippe,et al. Alu element‐containing RNAs maintain nucleolar structure and function , 2015, The EMBO journal.
[42] Gaurav Kumar Pandey,et al. Characterization of the RNA content of chromatin. , 2010, Genome research.
[43] C. Glass,et al. Induced ncRNAs Allosterically Modify RNA Binding Proteins in cis to Inhibit Transcription , 2008, Nature.
[44] T. Mikkelsen,et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells , 2007, Nature.
[45] Manolis Kellis,et al. Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals , 2014, Genome research.
[46] Z. Xue,et al. The nucleolus: an organelle formed by the act of building a ribosome. , 1995, Current opinion in cell biology.
[47] R. Evans,et al. Sharp, an inducible cofactor that integrates nuclear receptor repression and activation. , 2001, Genes & development.
[48] Neva C. Durand,et al. A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping , 2014, Cell.
[49] S. Thore,et al. Identification of Spen as a Crucial Factor for Xist Function through Forward Genetic Screening in Haploid Embryonic Stem Cells , 2015, Cell reports.
[50] Dominic P. Norris,et al. The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus , 1992, Cell.
[51] Howard Y. Chang,et al. Genome regulation by long noncoding RNAs. , 2012, Annual review of biochemistry.
[52] David G. Knowles,et al. The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression , 2012, Genome research.
[53] J. Rinn,et al. Modular regulatory principles of large non-coding RNAs , 2012, Nature.
[54] S. McKnight,et al. Phosphorylation-Regulated Binding of RNA Polymerase II to Fibrous Polymers of Low-Complexity Domains , 2013, Cell.
[55] E. Lander,et al. Local regulation of gene expression by lncRNA promoters, transcription and splicing , 2016, Nature.
[56] David R. Kelley,et al. Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre , 2014, Nature Structural &Molecular Biology.
[57] F. O. Fackelmayer,et al. Scaffold attachment factor A (SAF-A) is concentrated in inactive X chromosome territories through its RGG domain , 2003, Chromosoma.
[58] A. Hyman,et al. Liquid-liquid phase separation in biology. , 2014, Annual review of cell and developmental biology.
[59] L. Trinkle-Mulcahy,et al. Environmental cues induce a long noncoding RNA–dependent remodeling of the nucleolus , 2013, Molecular biology of the cell.
[60] G. Carmichael,et al. Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA. , 2009, Molecular cell.
[61] Rudolf Jaenisch,et al. Synergism of Xist Rna, DNA Methylation, and Histone Hypoacetylation in Maintaining X Chromosome Inactivation , 2001, The Journal of cell biology.
[62] Howard Y. Chang,et al. Structural organization of the inactive X chromosome in the mouse , 2016, Nature.
[63] T. Jenuwein,et al. Recruitment of PRC1 function at the initiation of X inactivation independent of PRC2 and silencing , 2006, The EMBO journal.
[64] Qiangfeng Cliff Zhang,et al. Systematic Discovery of Xist RNA Binding Proteins , 2015, Cell.
[65] N. Brockdorff. X-chromosome inactivation: closing in on proteins that bind Xist RNA. , 2002, Trends in genetics : TIG.
[66] Michael Q. Zhang,et al. Regulating Gene Expression through RNA Nuclear Retention , 2005, Cell.
[67] Brad A Chapman,et al. The genomic binding sites of a noncoding RNA , 2011, Proceedings of the National Academy of Sciences.
[68] G. Giglia-Mari,et al. DNA damage response. , 2011, Cold Spring Harbor perspectives in biology.
[69] J. Rinn,et al. linc-HOXA1 is a noncoding RNA that represses Hoxa1 transcription in cis. , 2013, Genes & development.
[70] Howard Y. Chang,et al. Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs , 2007, Cell.
[71] P. Stadler,et al. RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription , 2007, Science.
[72] D. Reinberg,et al. PRC2 binds to active promoters and contacts nascent RNAs in embryonic stem cells , 2013, Nature Structural &Molecular Biology.
[73] A. Belmont,et al. HSP70 Transgene Directed Motion to Nuclear Speckles Facilitates Heat Shock Activation , 2014, Current Biology.
[74] H. Lodish,et al. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. , 2014, Blood.
[75] S. Dhanasekaran,et al. The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex , 2013, Nature Genetics.
[76] B. Turner,et al. Histone acetylation and X inactivation. , 1998, Developmental genetics.
[77] R. Parker,et al. Compositional Control of Phase-Separated Cellular Bodies , 2016, Cell.
[78] Cole Trapnell,et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. , 2011, Genes & development.
[79] Katherine L. Wilson,et al. The nuclear lamina comes of age , 2005, Nature Reviews Molecular Cell Biology.
[80] F. Pauler,et al. Airn Transcriptional Overlap, But Not Its lncRNA Products, Induces Imprinted Igf2r Silencing , 2012, Science.
[81] R. Jaenisch,et al. Xist-deficient mice are defective in dosage compensation but not spermatogenesis. , 1997, Genes & development.
[82] Sarah K. Bowman,et al. High-resolution Xist binding maps reveal 2-step spreading during X-inactivation , 2013, Nature.
[83] Michael Q. Zhang,et al. A long nuclear‐retained non‐coding RNA regulates synaptogenesis by modulating gene expression , 2010, EMBO Journal.
[84] G. Chrousos,et al. Noncoding RNA Gas5 Is a Growth Arrest– and Starvation-Associated Repressor of the Glucocorticoid Receptor , 2010, Science Signaling.
[85] E. Rocha. The organization of the bacterial genome. , 2008, Annual review of genetics.
[86] T. Deerinck,et al. In vivo analysis of the stability and transport of nuclear poly(A)+ RNA , 1994, The Journal of cell biology.
[87] Yuehua Wu,et al. Long noncoding RNAs with snoRNA ends. , 2012, Molecular cell.
[88] A. Regev,et al. Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs , 2015, Genome Biology.
[89] B. van Steensel,et al. Mechanisms and dynamics of nuclear lamina-genome interactions. , 2014, Current opinion in cell biology.
[90] Fred Winston,et al. Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene , 2004, Nature.
[91] M. Guenther,et al. The SMRT and N-CoR Corepressors Are Activating Cofactors for Histone Deacetylase 3 , 2001, Molecular and Cellular Biology.
[92] Kyoung-Jae Won,et al. Nuclear Receptor Corepressors are Required for the Histone Deacetylase Activity of HDAC3 In Vivo , 2012, Nature Structural &Molecular Biology.
[93] A. Ashworth,et al. Conservation of position and exclusive expression of mouse Xist from the inactive X chromosome , 1991, Nature.
[94] T. Jenuwein,et al. Higher-order structure in pericentric heterochromatin involves a distinct pattern of histone modification and an RNA component , 2002, Nature Genetics.
[95] H. Kimura,et al. Human inactive X chromosome is compacted through a PRC2-independent SMCHD1-HBiX1 pathway , 2013, Nature Structural &Molecular Biology.
[96] Jesse R. Dixon,et al. Topological Domains in Mammalian Genomes Identified by Analysis of Chromatin Interactions , 2012, Nature.
[97] M. Dundr,et al. Nucleation of nuclear bodies by RNA , 2011, Nature Cell Biology.
[98] Yaron E. Antebi,et al. Dynamics of epigenetic regulation at the single-cell level , 2016, Science.
[99] L. Stanton,et al. The long noncoding RNA RMST interacts with SOX2 to regulate neurogenesis. , 2013, Molecular cell.
[100] Louise S. Matheson,et al. Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome , 2015, Nature Genetics.
[101] B. Williams,et al. Mapping and quantifying mammalian transcriptomes by RNA-Seq , 2008, Nature Methods.
[102] R. Kelley,et al. Ordered assembly of roX RNAs into MSL complexes on the dosage-compensated X chromosome in Drosophila , 2000, Current Biology.
[103] Howard Y. Chang,et al. A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression , 2011, Nature.
[104] B. Blencowe,et al. The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. , 2010, Molecular cell.
[105] Chinmay J. Shukla,et al. Function and evolution of local repeats in the Firre locus , 2016, Nature Communications.
[106] J. Mattick,et al. Genome-wide analysis of long noncoding RNA stability , 2012, Genome research.
[107] J. Rinn,et al. Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells , 2010, Nature Genetics.
[108] David L. Spector,et al. Nuclear speckles: a model for nuclear organelles , 2003, Nature Reviews Molecular Cell Biology.
[109] Giacomo Cavalli,et al. Polycomb silencing: from linear chromatin domains to 3D chromosome folding. , 2014, Current opinion in genetics & development.
[110] T. Misteli,et al. Long-Range Chromatin Interactions. , 2015, Cold Spring Harbor perspectives in biology.
[111] Diana M. Mitrea,et al. Coexisting Liquid Phases Underlie Nucleolar Subcompartments , 2016, Cell.
[112] Jimin Pei,et al. Cell-free Formation of RNA Granules: Low Complexity Sequence Domains Form Dynamic Fibers within Hydrogels , 2012, Cell.
[113] C. Stewart,et al. The nuclear lamins: flexibility in function , 2012, Nature Reviews Molecular Cell Biology.
[114] G. Biamonti,et al. Nuclear stress bodies. , 2010, Cold Spring Harbor perspectives in biology.
[115] Cole Trapnell,et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. , 2010, Nature biotechnology.
[116] Carolyn J. Brown,et al. The human XIST gene: Analysis of a 17 kb inactive X-specific RNA that contains conserved repeats and is highly localized within the nucleus , 1992, Cell.
[117] Dmitri A. Nusinow,et al. Xist RNA and the mechanism of X chromosome inactivation. , 2002, Annual review of genetics.
[118] A. Ferguson-Smith,et al. Mammalian genomic imprinting. , 2011, Cold Spring Harbor perspectives in biology.
[119] Jeannie T. Lee,et al. Polycomb Proteins Targeted by a Short Repeat RNA to the Mouse X Chromosome , 2008, Science.
[120] M. Egholm,et al. PNA interference mapping demonstrates functional domains in the noncoding RNA Xist , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[121] James B. Brown,et al. Long noncoding RNAs are rarely translated in two human cell lines , 2012, Genome research.
[122] Howard Y. Chang,et al. In situ dissection of RNA functional subunits by domain-specific chromatin isolation by RNA purification (dChIRP). , 2015, Methods in molecular biology.
[123] Y. Nakamura,et al. Stability of MALAT-1, a nuclear long non-coding RNA in mammalian cells, varies in various cancer cells. , 2010, Drug discoveries & therapeutics.
[124] Nicholas T. Ingolia,et al. Ribosome Profiling Provides Evidence that Large Noncoding RNAs Do Not Encode Proteins , 2013, Cell.
[125] S. Freier,et al. Regulation of the ESC transcriptome by nuclear long noncoding RNAs , 2015, Genome research.
[126] I. Grummt,et al. The structure of NoRC‐associated RNA is crucial for targeting the chromatin remodelling complex NoRC to the nucleolus , 2008, EMBO reports.
[127] E. Heard,et al. X-chromosome inactivation: new insights into cis and trans regulation. , 2015, Current opinion in genetics & development.
[128] Richard A Young,et al. Short RNAs are transcribed from repressed polycomb target genes and interact with polycomb repressive complex-2. , 2010, Molecular cell.
[129] Michael Y Tolstorukov,et al. The CLAMP protein links the MSL complex to the X chromosome during Drosophila dosage compensation. , 2013, Genes & development.
[130] D. Bartel,et al. Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species. , 2015, Cell reports.
[131] G. Brawerman,et al. Metabolism of the polyadenylate sequence of nuclear RNA and messenger RNA in mammalian cells , 1975, Cell.
[132] N. Brockdorff,et al. A Pooled shRNA Screen Identifies Rbm15, Spen, and Wtap as Factors Required for Xist RNA-Mediated Silencing , 2015, Cell reports.
[133] Frank Grützner,et al. The evolution of lncRNA repertoires and expression patterns in tetrapods , 2014, Nature.
[134] J. Graves,et al. Histone underacetylation is an ancient component of mammalian X chromosome inactivation. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[135] B. Panning,et al. The Polycomb group protein Eed protects the inactive X-chromosome from differentiation-induced reactivation , 2006, Nature Cell Biology.
[136] D. Corey,et al. Digital quantitation of potential therapeutic target RNAs. , 2013, Nucleic acid therapeutics.
[137] G. Blobel,et al. A lamin B receptor in the nuclear envelope. , 1988, Proceedings of the National Academy of Sciences of the United States of America.
[138] D. Gallie. Faculty Opinions recommendation of The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3. , 2015 .
[139] Carolyn J. Brown,et al. A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome , 1991, Nature.
[140] Matthew Mort,et al. Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts. , 2009, Genome research.
[141] J. Rinn,et al. "Cat's Cradling" the 3D Genome by the Act of LncRNA Transcription. , 2016, Molecular cell.
[142] William Stafford Noble,et al. Bipartite structure of the inactive mouse X chromosome , 2015, Genome Biology.
[143] John N. Hutchinson,et al. An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles. , 2009, Molecular cell.
[144] Jeannie T. Lee,et al. The Xist RNA-PRC2 complex at 20-nm resolution reveals a low Xist stoichiometry and suggests a hit-and-run mechanism in mouse cells , 2015, Proceedings of the National Academy of Sciences.
[145] S. Raguz,et al. Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a. , 2010, Molecular cell.
[146] J. Nickerson,et al. Chromatin architecture and nuclear RNA. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[147] Sharon R Grossman,et al. RNA-RNA Interactions Enable Specific Targeting of Noncoding RNAs to Nascent Pre-mRNAs and Chromatin Sites , 2014, Cell.
[148] Howard Y. Chang,et al. Essential role of lncRNA binding for WDR5 maintenance of active chromatin and embryonic stem cell pluripotency , 2014, eLife.
[149] Rudolf Jaenisch,et al. Chromosomal silencing and localization are mediated by different domains of Xist RNA , 2002, Nature Genetics.
[150] Jill P. Mesirov,et al. RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure , 2016, Cell.
[151] I. Amit,et al. Comprehensive mapping of long range interactions reveals folding principles of the human genome , 2011 .
[152] Jeannie T. Lee,et al. YY1 Tethers Xist RNA to the Inactive X Nucleation Center , 2011, Cell.
[153] Paulo P. Amaral,et al. MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles. , 2009, Genome research.
[154] T. Cremer,et al. Chromosome territories, nuclear architecture and gene regulation in mammalian cells , 2001, Nature Reviews Genetics.
[155] Howard Y. Chang,et al. Long Noncoding RNA as Modular Scaffold of Histone Modification Complexes , 2010, Science.
[156] N. Brockdorff,et al. Establishment of histone h3 methylation on the inactive X chromosome requires transient recruitment of Eed-Enx1 polycomb group complexes. , 2003, Developmental cell.
[157] T. Cheutin,et al. Identification of regulators of the three-dimensional polycomb organization by a microscopy-based genome-wide RNAi screen. , 2014, Molecular cell.
[158] T. Cech,et al. Yeast telomerase RNA: a flexible scaffold for protein subunits. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[159] Thomas Cremer,et al. Three-dimensional super-resolution microscopy of the inactive X chromosome territory reveals a collapse of its active nuclear compartment harboring distinct Xist RNA foci , 2014, Epigenetics & Chromatin.
[160] J. Nickerson,et al. Core filaments of the nuclear matrix , 1990, The Journal of cell biology.
[161] J. Rinn,et al. Ab initio reconstruction of transcriptomes of pluripotent and lineage committed cells reveals gene structures of thousands of lincRNAs , 2010, Nature Biotechnology.
[162] Howard Y. Chang,et al. 7SK-BAF axis controls pervasive transcription at enhancers , 2016, Nature Structural &Molecular Biology.
[163] T. Cech,et al. Toward a consensus on the binding specificity and promiscuity of PRC2 for RNA. , 2015, Molecular cell.
[164] J. Rinn,et al. Ribosome profiling reveals resemblance between long non-coding RNAs and 5′ leaders of coding RNAs , 2013, Development.
[165] J. Rinn,et al. Ab initio reconstruction of transcriptomes of pluripotent and lineage committed cells reveals gene structures of thousands of lincRNAs , 2010, Nature biotechnology.
[166] R. Jaenisch,et al. Long-range cis effects of ectopic X-inactivation centres on a mouse autosome , 1997, Nature.
[167] S. Rastan,et al. Requirement for Xist in X chromosome inactivation , 1996, Nature.
[168] G. Helt,et al. Transcriptional Maps of 10 Human Chromosomes at 5-Nucleotide Resolution , 2005, Science.
[169] E. Westhof,et al. The building blocks and motifs of RNA architecture. , 2006, Current opinion in structural biology.
[170] N. Brockdorff,et al. The matrix protein hnRNP U is required for chromosomal localization of Xist RNA. , 2010, Developmental cell.
[171] Pu Zhang,et al. DNMT1-interacting RNAs block gene specific DNA methylation , 2013, Nature.
[172] S. Verjovski-Almeida,et al. Global analysis of biogenesis, stability and sub-cellular localization of lncRNAs mapping to intragenic regions of the human genome , 2015, RNA biology.
[173] Jernej Ule,et al. The RNA-binding landscapes of two SR proteins reveal unique functions and binding to diverse RNA classes , 2012, Genome Biology.
[174] Wendy A Bickmore,et al. Chromatin Motion Is Constrained by Association with Nuclear Compartments in Human Cells , 2002, Current Biology.
[175] N. Gilbert,et al. Analysis of Active and Inactive X Chromosome Architecture Reveals the Independent Organization of 30 nm and Large-Scale Chromatin Structures , 2010, Molecular cell.
[176] A. C. Chinault,et al. Differentially methylated forms of histone H3 show unique association patterns with inactive human X chromosomes , 2002, Nature Genetics.
[177] Noah Ollikainen,et al. Xist recruits the X chromosome to the nuclear lamina to enable chromosome-wide silencing , 2016, Science.
[178] J. Lawrence,et al. Stable C0T-1 Repeat RNA Is Abundant and Is Associated with Euchromatic Interphase Chromosomes , 2014, Cell.
[179] Matteo Pellegrini,et al. Long-range chromatin contacts in embryonic stem cells reveal a role for pluripotency factors and polycomb proteins in genome organization. , 2013, Cell stem cell.