Local SIMPLE multi-atlas-based segmentation applied to lung lobe detection on chest CT

For multi atlas-based segmentation approaches, a segmentation fusion scheme which considers local performance measures may be more accurate than a method which uses a global performance measure. We improve upon an existing segmentation fusion method called SIMPLE and extend it to be localized and suitable for multi-labeled segmentations. We demonstrate the algorithm performance on 23 CT scans of COPD patients using a leave-one- out experiment. Our algorithm performs significantly better (p < 0.01) than majority voting, STAPLE, and SIMPLE, with a median overlap of the fissure of 0.45, 0.48, 0.55 and 0.6 for majority voting, STAPLE, SIMPLE, and the proposed algorithm, respectively.

[1]  Torsten Rohlfing,et al.  Performance-based classifier combination in atlas-based image segmentation using expectation-maximization parameter estimation , 2004, IEEE Transactions on Medical Imaging.

[2]  Johan H. C. Reiber,et al.  A strain energy filter for 3D vessel enhancement with application to pulmonary CT images , 2011, Medical Image Anal..

[3]  Carlos Ortiz-de-Solorzano,et al.  Combination Strategies in Multi-Atlas Image Segmentation: Application to Brain MR Data , 2009, IEEE Transactions on Medical Imaging.

[4]  Jan Stolk,et al.  Optimization and Standardization of Lung Densitometry in the Assessment of Pulmonary Emphysema , 2004, Investigative radiology.

[5]  Stefan Klein,et al.  Pulmonary Image Registration with elastix using a Standard Intensity-Based Algorithm , 2010 .

[6]  Max A. Viergever,et al.  elastix: A Toolbox for Intensity-Based Medical Image Registration , 2010, IEEE Transactions on Medical Imaging.

[7]  Max A. Viergever,et al.  Label Fusion in Atlas-Based Segmentation Using a Selective and Iterative Method for Performance Level Estimation (SIMPLE) , 2010, IEEE Transactions on Medical Imaging.

[8]  Dirkje S Postma,et al.  Smoking cessation and bronchial epithelial remodelling in COPD: a cross-sectional study , 2007, Respiratory research.

[9]  Alejandro F. Frangi,et al.  Muliscale Vessel Enhancement Filtering , 1998, MICCAI.

[10]  Torsten Rohlfing,et al.  Evaluation of atlas selection strategies for atlas-based image segmentation with application to confocal microscopy images of bee brains , 2004, NeuroImage.

[11]  Torsten Rohlfing,et al.  Quo Vadis, Atlas-Based Segmentation? , 2005 .

[12]  William M. Wells,et al.  Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation , 2004, IEEE Transactions on Medical Imaging.