Ser120 of Ubc2/Rad6 Regulates Ubiquitin-dependent N-end Rule Targeting by E3α/Ubr1*

In CHO cells, CDK1/2-dependent phosphorylation of Ubc2/Rad6 at Ser120 stimulates its ubiquitin conjugating activity and can be replicated by a S120D point mutant (Sarcevic, B., Mawson, A., Baker, R. T., and Sutherland, R. L. (2002) EMBO J. 21, 2009–2018). In contrast, we find that ectopic expression of wild type Ubc2b but not Ubc2bS120D or Ubc2bS120A in T47D human breast cancer cells specifically stimulates N-end rule-dependent degradation but not the Ubc2-independent unfolded protein response pathway, indicating that the former is E2 limiting in vivo and likely down-regulated by Ser120 phosphorylation, as modeled by the S120D point mutation. In vitro kinetic analysis shows the in vivo phenotype of Ubc2bS120D and Ubc2bS120A is not due to differences in activating enzyme-catalyzed E2 transthiolation. However, the Ser120 mutants possess marked differences in their abilities to support in vitro conjugation by the N-end rule-specific E3α/Ubr1 ligase that presumably accounts for their in vivo effects. Initial rate kinetics of human E3α-catalyzed conjugation of the human α-lactalbumin N-end rule substrate shows Ubc2bS120D is 20-fold less active than wild type E2, resulting from an 8-fold increase in Km and a 2.5-fold decrease in Vmax, the latter reflecting a decreased ability to support the initial step in target protein conjugation; Ubc2bS120A is 8-fold less active than wild type E2 due almost exclusively to a decrease in Vmax, reflecting a defect in polyubiquitin chain elongation. These studies suggest a mechanism for the integrated regulation of diverse ubiquitin-dependent signaling pathways through E2 phosphorylation that yields differential effects on its cognate ligases.

[1]  Nadinath B. Nillegoda,et al.  Ubr1 and Ubr2 Function in a Quality Control Pathway for Degradation of Unfolded Cytosolic Proteins , 2010, Molecular biology of the cell.

[2]  Lorena Agudo-Ibáñez,et al.  The Ras‐ERK pathway: Understanding site‐specific signaling provides hope of new anti‐tumor therapies , 2010, BioEssays : news and reviews in molecular, cellular and developmental biology.

[3]  H. Handa,et al.  Role of N‐end rule ubiquitin ligases UBR1 and UBR2 in regulating the leucine‐mTOR signaling pathway , 2010, Genes to cells : devoted to molecular & cellular mechanisms.

[4]  Harald W. Platta,et al.  Pex2 and Pex12 Function as Protein-Ubiquitin Ligases in Peroxisomal Protein Import , 2009, Molecular and Cellular Biology.

[5]  M. Yaffe,et al.  Kinases that control the cell cycle in response to DNA damage: Chk1, Chk2, and MK2. , 2009, Current opinion in cell biology.

[6]  D. Wolf,et al.  Degradation of misfolded protein in the cytoplasm is mediated by the ubiquitin ligase Ubr1 , 2008, FEBS letters.

[7]  A. Haas,et al.  Pleiotropic Effects of ATP·Mg2+ Binding in the Catalytic Cycle of Ubiquitin-activating Enzyme* , 2006, Journal of Biological Chemistry.

[8]  H. Hauser,et al.  Innate Immune Responses in NF-κB-Repressing Factor-Deficient Mice , 2006, Molecular and Cellular Biology.

[9]  Ivan Dikic,et al.  Ubiquitylation and cell signaling , 2005, The EMBO journal.

[10]  M. Masucci,et al.  Endoplasmic reticulum stress compromises the ubiquitin-proteasome system. , 2005, Human molecular genetics.

[11]  N. Dantuma,et al.  Fluorescent reporters for the ubiquitin–proteasome system , 2005 .

[12]  R. Mayer,et al.  Ubiquitin and ubiquitin-like proteins as multifunctional signals , 2005, Nature Reviews Molecular Cell Biology.

[13]  A. Shinohara,et al.  Rad6-Bre1-mediated histone H2B ubiquitylation modulates the formation of double-strand breaks during meiosis. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[14]  M. Osley H2B ubiquitylation: the end is in sight. , 2004, Biochimica et biophysica acta.

[15]  E. Monaco Recent evidence regarding a role for Cdk5 dysregulation in Alzheimer's disease. , 2004, Current Alzheimer research.

[16]  Karl Mechtler,et al.  Mitotic regulation of the human anaphase‐promoting complex by phosphorylation , 2003, The EMBO journal.

[17]  A. Haas,et al.  Conservation in the Mechanism of Nedd8 Activation by the Human AppBp1-Uba3 Heterodimer* , 2003, Journal of Biological Chemistry.

[18]  A. Varshavsky The N-end rule and regulation of apoptosis , 2003, Nature Cell Biology.

[19]  A. Haas,et al.  Protein Interactions within the N-end Rule Ubiquitin Ligation Pathway* , 2003, The Journal of Biological Chemistry.

[20]  Robert L Sutherland,et al.  Regulation of the ubiquitin‐conjugating enzyme hHR6A by CDK‐mediated phosphorylation , 2002, The EMBO journal.

[21]  T. Boyer,et al.  Phosphorylation of the Human Ubiquitin-conjugating Enzyme, CDC34, by Casein Kinase 2* , 2001, The Journal of Biological Chemistry.

[22]  A. Haas,et al.  N-end Rule Specificity within the Ubiquitin/Proteasome Pathway Is Not an Affinity Effect* , 2001, The Journal of Biological Chemistry.

[23]  Ping Wang,et al.  Structure of a c-Cbl–UbcH7 Complex RING Domain Function in Ubiquitin-Protein Ligases , 2000, Cell.

[24]  S. Jentsch,et al.  Two RING finger proteins mediate cooperation between ubiquitin‐conjugating enzymes in DNA repair , 2000, The EMBO journal.

[25]  M. Osley,et al.  Rad6-dependent ubiquitination of histone H2B in yeast. , 2000, Science.

[26]  P. Howley,et al.  Structure of an E6AP-UbcH7 complex: insights into ubiquitination by the E2-E3 enzyme cascade. , 1999, Science.

[27]  R. G. Kulka,et al.  Degradation signals for ubiquitin system proteolysis in Saccharomyces cerevisiae , 1998, The EMBO journal.

[28]  A. Varshavsky The N‐end rule pathway of protein degradation , 1997, Genes to cells : devoted to molecular & cellular mechanisms.

[29]  A. Haas,et al.  Novel Multiubiquitin Chain Linkages Catalyzed by the Conjugating Enzymes E2EPF and RAD6 Are Recognized by 26 S Proteasome Subunit 5 (*) , 1996, The Journal of Biological Chemistry.

[30]  T. Maniatis,et al.  Signal-induced site-specific phosphorylation targets I kappa B alpha to the ubiquitin-proteasome pathway. , 1995, Genes & development.

[31]  A. Goldberg,et al.  Increase in ubiquitin-protein conjugates concomitant with the increase in proteolysis in rat skeletal muscle during starvation and atrophy denervation. , 1995, The Biochemical journal.

[32]  L. Schwartz,et al.  Coordinated Induction of the Ubiquitin Conjugation Pathway Accompanies the Developmentally Programmed Death of Insect Skeletal Muscle (*) , 1995, The Journal of Biological Chemistry.

[33]  F. Wiebel,et al.  The Pas2 protein essential for peroxisome biogenesis is related to ubiquitin-conjugating enzymes , 1992, Nature.

[34]  K. Loeb,et al.  The interferon-inducible 15-kDa ubiquitin homolog conjugates to intracellular proteins. , 1992, The Journal of biological chemistry.

[35]  A. Varshavsky,et al.  The N-end rule is mediated by the UBC2(RAD6) ubiquitin-conjugating enzyme. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[36]  A. Haas,et al.  Ubiquitin conjugation by the yeast RAD6 and CDC34 gene products. Comparison to their putative rabbit homologs, E2(20K) AND E2(32K). , 1991, The Journal of biological chemistry.

[37]  O. M. Ogunjobi,et al.  Ubiquitin: preparative chemical synthesis, purification and characterization. , 1990, Biochemical Society transactions.

[38]  L. Schwartz,et al.  Activation of polyubiquitin gene expression during developmentally programmed cell death , 1990, Neuron.

[39]  S. Ho,et al.  Site-directed mutagenesis by overlap extension using the polymerase chain reaction. , 1989, Gene.

[40]  D. Ecker,et al.  A multiubiquitin chain is confined to specific lysine in a targeted short-lived protein. , 1989, Science.

[41]  A. Haas,et al.  The resolution and characterization of putative ubiquitin carrier protein isozymes from rabbit reticulocytes. , 1988, The Journal of biological chemistry.

[42]  A. Hershko,et al.  Specificity of binding of NH2-terminal residue of proteins to ubiquitin-protein ligase. Use of amino acid derivatives to characterize specific binding sites. , 1988, The Journal of biological chemistry.

[43]  Alexander Varshavsky,et al.  The yeast DNA repair gene RAD6 encodes a ubiquitin-conjugating enzyme , 1987, Nature.

[44]  A. Haas,et al.  The immunochemical detection and quantitation of intracellular ubiquitin-protein conjugates. , 1985, The Journal of biological chemistry.

[45]  I. A. Rose,et al.  Functional heterogeneity of ubiquitin carrier proteins. , 1985, Progress in clinical and biological research.

[46]  A. Haas,et al.  The mechanism of ubiquitin activating enzyme. A kinetic and equilibrium analysis. , 1982, The Journal of biological chemistry.

[47]  A. Hershko,et al.  Ubiquitin-activating enzyme. Mechanism and role in protein-ubiquitin conjugation. , 1982, The Journal of biological chemistry.

[48]  I. A. Rose,et al.  Hemin inhibits ATP-dependent ubiquitin-dependent proteolysis: role of hemin in regulating ubiquitin conjugate degradation. , 1981, Proceedings of the National Academy of Sciences of the United States of America.

[49]  A Ciechanover,et al.  ATP-dependent conjugation of reticulocyte proteins with the polypeptide required for protein degradation. , 1980, Proceedings of the National Academy of Sciences of the United States of America.

[50]  M. Groettrup Conjugation and deconjugation of ubiquitin family modifiers , 2010 .

[51]  N. Dantuma,et al.  Monitoring of ubiquitin-dependent proteolysis with green fluorescent protein substrates. , 2005, Methods in enzymology.

[52]  A. Haas Purification of E1 and E1-like enzymes. , 2005, Methods in molecular biology.

[53]  C. Pickart,et al.  Mechanisms underlying ubiquitination. , 2001, Annual review of biochemistry.

[54]  M. Magnani,et al.  Red Blood Cell Aging , 1991, Advances in Experimental Medicine and Biology.