A Context-Specific Network of Protein-DNA and Protein-Protein Interactions Reveals New Regulatory Motifs in Human B Cells
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Wei Keat Lim | Céline Lefebvre | Andrea Califano | Katia Basso | Riccardo Dalla Favera | K. Basso | A. Califano | W. Lim | C. Lefebvre | R. Favera
[1] Alexander E. Kel,et al. TRANSFAC®: transcriptional regulation, from patterns to profiles , 2003, Nucleic Acids Res..
[2] Alessandro Vespignani,et al. Global protein function prediction from protein-protein interaction networks , 2003, Nature Biotechnology.
[3] Chris Wiggins,et al. ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context , 2004, BMC Bioinformatics.
[4] Erik L. L. Sonnhammer,et al. Inparanoid: a comprehensive database of eukaryotic orthologs , 2004, Nucleic Acids Res..
[5] Michael Krauthammer,et al. GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data , 2004, J. Biomed. Informatics.
[6] G. Church,et al. Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae , 2001, Nature Genetics.
[7] Hanno Steen,et al. Development of human protein reference database as an initial platform for approaching systems biology in humans. , 2003, Genome research.
[8] H. Lodish,et al. Specificity in transforming growth factor beta-induced transcription of the plasminogen activator inhibitor-1 gene: interactions of promoter DNA, transcription factor muE3, and Smad proteins. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[9] Kathryn A. O’Donnell,et al. An integrated database of genes responsive to the Myc oncogenic transcription factor: identification of direct genomic targets , 2003, Genome Biology.
[10] M. Gerstein,et al. Design principles of molecular networks revealed by global comparisons and composite motifs , 2006, Genome Biology.
[11] Martin Vingron,et al. IntAct: an open source molecular interaction database , 2004, Nucleic Acids Res..
[12] R. Milo,et al. Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[13] T. Barrette,et al. Probabilistic model of the human protein-protein interaction network , 2005, Nature Biotechnology.
[14] Gary D Bader,et al. BIND--The Biomolecular Interaction Network Database. , 2001, Nucleic acids research.
[15] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[16] M. Gerstein,et al. Subcellular localization of the yeast proteome. , 2002, Genes & development.
[17] Adam A. Margolin,et al. Reverse engineering of regulatory networks in human B cells , 2005, Nature Genetics.
[18] Ioannis Xenarios,et al. DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions , 2002, Nucleic Acids Res..
[19] H. Lehrach,et al. A Human Protein-Protein Interaction Network: A Resource for Annotating the Proteome , 2005, Cell.
[20] M. Gerstein,et al. A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data , 2003, Science.
[21] S. L. Wong,et al. Towards a proteome-scale map of the human protein–protein interaction network , 2005, Nature.
[22] Gil Alterovitz,et al. GO PaD: the Gene Ontology Partition Database , 2006, Nucleic Acids Res..
[23] Dmitrij Frishman,et al. MIPS: analysis and annotation of proteins from whole genomes in 2005 , 2006, Nucleic Acids Res..
[24] Kai Wang,et al. Genome-Wide Discovery of Modulators of Transcriptional Interactions in Human B Lymphocytes , 2006, RECOMB.