A Review of Algorithms for Segmentation of Retinal Image Data Using Optical Coherence Tomography

In the context of biomedical imaging analysis and computer-assisted diagnosis, segmentation analysis is an intense field of research and development. The most difficult part of medical image analysis is the automated localization and delineation of structures of interest. Automated data evaluation is one way of enhancing the clinical utility of measurements. In particular, medical image segmentation extracts meaningful information and facilitate the display of this information in a clinically relevant way. A crucial role for automated information extraction in medical imaging usually involves the segmentation of regions of the image in order to quantify volumes and areas of interest of biological tissues for further diagnosis and localization of pathologies. Optical coherence tomography (OCT) is a powerful imaging modality used to image various aspects of biological tissues, such as structural information, blood flow, elastic parameters, change of polarization states and molecular content (Huang et al., 1991). OCT uses the principle of low coherence interferometry to generate two or three dimensional imaging of biological samples by obtaining high-resolution cross-sectional backscattering profiles. A variety of successful algorithms for computer-aided diagnosis by means of OCT image analysis are presented in the literature, but robust use in clinical practice is still a major challenge for ongoing research in OCT image analysis. There are, therefore, efforts being made to improve clinical decision making based on automated analysis of OCT data. Particularly, in ophthalmology, efforts have been made to characterize clinically important features, such as damage to the fovea and optic nerve, automatically. The transfer of image analysis models from algorithmic development into clinical application is currently the major bottleneck due to the complexity of the overall process. For example, the process to establish an application for OCT medical image analysis requires difficult and complex tasks that should considers the following actions: 1) to define the OCT image data structures representing relevant biomedical features and the algorithms determining a valid example for given image values, 2) to select meaningful values for all technical parameters of the image data structures and algorithms and, as a result, to configure such a method to operate on specific OCT clinical data, 3) to run the algorithm with the selected parameters to find the individual model instance that best explains the input image and 4) to validate the procedure to ensure a trustworthy result from an automated segmentation algorithm even if a gold standard is unavailable.

[1]  Jzau-Sheng Lin,et al.  The application of competitive Hopfield neural network to medical image segmentation , 1996, IEEE Trans. Medical Imaging.

[2]  D. R. Fulkerson,et al.  Maximal Flow Through a Network , 1956 .

[3]  J. Izatt,et al.  In vivo imaging of human retinal flow dynamics by color Doppler optical coherence tomography. , 2003, Archives of ophthalmology.

[4]  Qi Yang,et al.  Automated layer segmentation of macular OCT images using dual-scale gradient information. , 2010, Optics express.

[5]  N C Andreasen,et al.  Automatic atlas-based volume estimation of human brain regions from MR images. , 1996, Journal of computer assisted tomography.

[6]  Carmen A. Puliafito,et al.  3–D OCT Maps of Retinal Pathologies , 2005 .

[7]  Mark C. Pierce,et al.  In vivo depth-resolved birefringence measurements of the human retinal nerve fiber layer by polarization-sensitive optical coherence tomography , 2002 .

[8]  Boris Hermann,et al.  Robust segmentation of intraretinal layers in the normal human fovea using a novel statistical model based on texture and shape analysis. , 2010, Optics express.

[9]  Ron Kikinis,et al.  Markov random field segmentation of brain MR images , 1997, IEEE Transactions on Medical Imaging.

[10]  Vladimir Kolmogorov,et al.  What energy functions can be minimized via graph cuts? , 2002, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[11]  J. Talairach,et al.  Co-Planar Stereotaxic Atlas of the Human Brain: 3-Dimensional Proportional System: An Approach to Cerebral Imaging , 1988 .

[12]  Wolfgang Drexler,et al.  State-of-the-art retinal optical coherence tomography , 2008, Progress in Retinal and Eye Research.

[13]  Zhongping Chen,et al.  Optical Doppler tomographic imaging of fluid flow velocity in highly scattering media. , 1997, Optics letters.

[14]  J. Izatt,et al.  Optical Coherence Tomography and Microscopy in Gastrointestinal Tissues , 1996, Advances in Optical Imaging and Photon Migration.

[15]  P.K Sahoo,et al.  A survey of thresholding techniques , 1988, Comput. Vis. Graph. Image Process..

[16]  A. Cideciyan,et al.  Relation of optical coherence tomography to microanatomy in normal and rd chickens. , 1998, Investigative ophthalmology & visual science.

[17]  Milan Sonka,et al.  Three-Dimensional Analysis of Retinal Layer Texture: Identification of Fluid-Filled Regions in SD-OCT of the Macula , 2010, IEEE Transactions on Medical Imaging.

[18]  Anna Szkulmowska,et al.  Analysis of posterior retinal layers in spectral optical coherence tomography images of the normal retina and retinal pathologies. , 2007, Journal of biomedical optics.

[19]  Siavash Yazdanfar,et al.  Visualization of subsurface blood vessels by color Doppler optical coherence tomography in rats: before and after hemostatic therapy. , 2002, Gastrointestinal endoscopy.

[20]  Risto Myllylä,et al.  Automated segmentation of the macula by optical coherence tomography. , 2009, Optics express.

[21]  R. Ansari,et al.  Thickness profiles of retinal layers by optical coherence tomography image segmentation. , 2008, American journal of ophthalmology.

[22]  J. Fujimoto,et al.  Optical coherence tomography of the human retina. , 1995, Archives of ophthalmology.

[23]  Shijian Lu,et al.  Automated layer segmentation of optical coherence tomography images , 2010, 2010 5th IEEE Conference on Industrial Electronics and Applications.

[24]  Delia Cabrera Fernandez,et al.  Delineating fluid-filled region boundaries in optical coherence tomography images of the retina , 2005, IEEE Transactions on Medical Imaging.

[25]  G. Ripandelli,et al.  Optical coherence tomography. , 1998, Seminars in ophthalmology.

[26]  Milan Sonka,et al.  3-D segmentation of retinal blood vessels in spectral-domain OCT volumes of the optic nerve head , 2010, Medical Imaging.

[27]  Michael Richard Hee,et al.  Optical coherence tomography of the eye , 1997 .

[28]  Xiaodong Wu,et al.  Intraretinal Layer Segmentation of Macular Optical Coherence Tomography Images Using Optimal 3-D Graph Search , 2008, IEEE Transactions on Medical Imaging.

[29]  J. Fujimoto Optical coherence tomography for ultrahigh resolution in vivo imaging , 2003, Nature Biotechnology.

[30]  Erika Tátrai,et al.  Potentiality of Intraretinal Layer Segmentation to Locally Detect Early Retinal Changes in Patients With Diabetes Mellitus Using Optical Coherence Tomography , 2008 .

[31]  Bernd Hamann,et al.  Segmentation of Three-dimensional Retinal Image Data , 2007, IEEE Transactions on Visualization and Computer Graphics.

[32]  Christoph von der Malsburg,et al.  The Correlation Theory of Brain Function , 1994 .

[33]  Fabrice Manns,et al.  Simultaneous fundus imaging and optical coherence tomography of the mouse retina. , 2007, Investigative ophthalmology & visual science.

[34]  Zhihua Ding,et al.  Phase-resolved functional optical coherence tomography: simultaneous imaging of in situ tissue structure, blood flow velocity, standard deviation, birefringence, and Stokes vectors in human skin. , 2002, Optics letters.

[35]  H. Novotny,et al.  A Method of Photographing Fluorescence in Circulating Blood in the Human Retina , 1961, Circulation.

[36]  E A Swanson,et al.  Micrometer-scale resolution imaging of the anterior eye in vivo with optical coherence tomography. , 1994, Archives of ophthalmology.

[37]  Aly A. Farag,et al.  Modified fuzzy c-mean in medical image segmentation , 1999, 1999 IEEE International Conference on Acoustics, Speech, and Signal Processing. Proceedings. ICASSP99 (Cat. No.99CH36258).

[38]  A. Hackam,et al.  In vivo three-dimensional high-resolution imaging of rodent retina with spectral-domain optical coherence tomography. , 2007, Investigative ophthalmology & visual science.

[39]  Kyungmoo Lee,et al.  Automated segmentation of neural canal opening and optic cup in 3D spectral optical coherence tomography volumes of the optic nerve head. , 2010, Investigative ophthalmology & visual science.

[40]  DeLiang Wang,et al.  Image Segmentation Based on Oscillatory Correlation , 1997, Neural Computation.

[41]  Joachim Hornegger,et al.  Automatic Nerve Fiber Layer Segmentation and Geometry Correction on Spectral Domain OCT Images Using Fuzzy C-Means Clustering , 2008 .

[42]  Ghassan Hamarneh,et al.  Intra-retinal Layer Segmentation in Optical Coherence Tomography Using an Active Contour Approach , 2009, MICCAI.

[43]  Milan Sonka,et al.  Automated segmentation of the cup and rim from spectral domain OCT of the optic nerve head. , 2009, Investigative ophthalmology & visual science.

[44]  Stephen A. Bopparr,et al.  Ultrahigh Resolution and Spectroscopic OCT Imaging of Cellular Morphology and Function , 2002 .

[45]  A. Fercher,et al.  Measurement of intraocular distances by backscattering spectral interferometry , 1995 .

[46]  U. Schmidt-Erfurth,et al.  Retinal pigment epithelium segmentation by polarization sensitive optical coherence tomography. , 2008, Optics express.

[47]  Steven M. Jones,et al.  Adaptive-optics optical coherence tomography for high-resolution and high-speed 3D retinal in vivo imaging. , 2005, Optics express.

[48]  Sina Farsiu,et al.  Fast detection and segmentation of drusen in retinal optical coherence tomography images , 2008, SPIE BiOS.

[49]  J. Fujimoto,et al.  Optical coherence microscopy in scattering media. , 1994, Optics letters.

[50]  Alexander Wong,et al.  Intra-retinal layer segmentation in optical coherence tomography images. , 2009, Optics express.

[51]  J C Mazziotta,et al.  Automated labeling of the human brain: A preliminary report on the development and evaluation of a forward‐transform method , 1997, Human brain mapping.

[52]  Siavash Yazdanfar,et al.  Real-time, high velocity-resolution color Doppler optical coherence tomography. , 2002, Optics letters.

[53]  Teresa C. Chen,et al.  Retinal nerve fiber layer thickness map determined from optical coherence tomography images. , 2005, Optics express.

[54]  Joseph A. Izatt,et al.  Automatic segmentation of seven retinal layers in SDOCT images congruent with expert manual segmentation , 2010, Optics express.

[55]  M. V. van Gemert,et al.  Two-dimensional birefringence imaging in biological tissue using polarization-sensitive optical coherence tomography , 1997, European Conference on Biomedical Optics.

[56]  L. Yannuzzi,et al.  Combined multiplanar optical coherence tomography and confocal scanning ophthalmoscopy. , 2004, Journal of biomedical optics.

[57]  J. Fujimoto,et al.  Optical coherence tomography for optical biopsy. Properties and demonstration of vascular pathology. , 1996, Circulation.

[58]  Carmen A. Puliafito,et al.  Imaging Drusen With Spectral Domain Optical Coherence Tomography , 2008 .

[59]  Kim L. Boyer,et al.  Robust Extraction of the Optic Nerve Head in Optical Coherence Tomography , 2004, ECCV Workshops CVAMIA and MMBIA.

[60]  J M Seddon,et al.  Spectral domain optical coherence tomography for quantitative evaluation of drusen and associated structural changes in non-neovascular age-related macular degeneration , 2008, British Journal of Ophthalmology.

[61]  Thrasyvoulos N. Pappas,et al.  An Adaptive Clustering Algorithm For Image Segmentation , 1988, [1988 Proceedings] Second International Conference on Computer Vision.

[62]  G. Ha Usler,et al.  "Coherence radar" and "spectral radar"-new tools for dermatological diagnosis. , 1998, Journal of biomedical optics.

[63]  P. Artal,et al.  Adaptive-optics ultrahigh-resolution optical coherence tomography. , 2004, Optics letters.

[64]  Hiroshi Ishikawa,et al.  Macular segmentation with optical coherence tomography. , 2005, Investigative ophthalmology & visual science.

[65]  Stan Z. Li,et al.  Markov Random Field Modeling in Computer Vision , 1995, Computer Science Workbench.

[66]  Kim L. Boyer,et al.  Automatic recovery of the optic nervehead geometry in optical coherence tomography , 2006, IEEE Transactions on Medical Imaging.

[67]  M. Wojtkowski,et al.  Real-time in vivo imaging by high-speed spectral optical coherence tomography. , 2003, Optics letters.

[68]  Hiroshi Ishikawa,et al.  Detecting the inner and outer borders of the retinal nerve fiber layer using optical coherence tomography , 2002, Graefe's Archive for Clinical and Experimental Ophthalmology.

[69]  Gábor Márk Somfai,et al.  Early detection of retinal thickness changes in diabetes using Optical Coherence Tomography. , 2010, Medical science monitor : international medical journal of experimental and clinical research.

[70]  Frederick E. Petry,et al.  Principles and Applications , 1997 .

[71]  Zhongping Chen,et al.  Imaging thermally damaged tissue by Polarization Sensitive Optical Coherence Tomography. , 1998, Optics express.

[72]  J. Taylor,et al.  Optophysiology: depth-resolved probing of retinal physiology with functional ultrahigh-resolution optical coherence tomography. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[73]  R. Zawadzki,et al.  Real-time assessment of retinal blood flow with ultrafast acquisition by color Doppler Fourier domain optical coherence tomography. , 2003, Optics express.

[74]  Kim L. Boyer,et al.  Retinal thickness measurements in optical coherence tomography using a Markov boundary model , 2000, Proceedings IEEE Conference on Computer Vision and Pattern Recognition. CVPR 2000 (Cat. No.PR00662).

[75]  Kim L. Boyer,et al.  Retinal thickness measurements from optical coherence tomography using a Markov boundary model , 2001, IEEE Transactions on Medical Imaging.

[76]  J G Fujimoto,et al.  Spectroscopic optical coherence tomography. , 2000, Optics letters.

[77]  M. Torrens Co-Planar Stereotaxic Atlas of the Human Brain—3-Dimensional Proportional System: An Approach to Cerebral Imaging, J. Talairach, P. Tournoux. Georg Thieme Verlag, New York (1988), 122 pp., 130 figs. DM 268 , 1990 .

[78]  M. Brezinski Optical Coherence Tomography: Principles and Applications , 2006 .

[79]  B. Bouma,et al.  Improved signal-to-noise ratio in spectral-domain compared with time-domain optical coherence tomography. , 2003, Optics letters.

[80]  Changhuei Yang,et al.  Sensitivity advantage of swept source and Fourier domain optical coherence tomography. , 2003, Optics express.

[81]  Carmen A Puliafito,et al.  Automated detection of retinal layer structures on optical coherence tomography images. , 2005, Optics express.

[82]  U. Schmidt-Erfurth,et al.  Automatic segmentation in three-dimensional analysis of fibrovascular pigmentepithelial detachment using high-definition optical coherence tomography , 2007, British Journal of Ophthalmology.

[83]  David Huang,et al.  Mapping of macular substructures with optical coherence tomography for glaucoma diagnosis. , 2006, Ophthalmology.

[84]  James G. Fujimoto,et al.  Optical Coherence Tomography of Ocular Diseases , 1995 .

[85]  M. Shahidi,et al.  Quantitative thickness measurement of retinal layers imaged by optical coherence tomography. , 2005, American journal of ophthalmology.

[86]  Javad Alirezaie,et al.  Neural network based segmentation of magnetic resonance images of the brain , 1995, 1995 IEEE Nuclear Science Symposium and Medical Imaging Conference Record.

[87]  D. Greig,et al.  Exact Maximum A Posteriori Estimation for Binary Images , 1989 .

[88]  Yongmin Kim,et al.  Pubic arch detection in transrectal ultrasound guided prostate cancer therapy , 1998, IEEE Transactions on Medical Imaging.

[89]  V.R.S Mani,et al.  Survey of Medical Image Registration , 2013 .

[90]  M. Baroni,et al.  Towards quantitative analysis of retinal features in optical coherence tomography. , 2007, Medical engineering & physics.

[91]  J G Fujimoto,et al.  High-resolution optical coherence microscopy for high-speed, in vivo cellular imaging. , 2003, Optics letters.

[92]  Giovanni Gregori,et al.  A Robust Algorithm for Retinal Thickness Measurements using Optical Coherence Tomography (Stratus OCT) , 2004 .

[93]  Zygmunt Wróbel,et al.  Layers Recognition in Tomographic Eye Image Based on Random Contour Analysis , 2009, Computer Recognition Systems 3.

[94]  Josiane Zerubia,et al.  Image Segmentation Using Markov Random Field Model in Fully Parallel Cellular Network Architectures , 2000 .

[95]  Carmen A. Puliafito,et al.  Comparing total macular volume changes measured by Optical Coherence Tomography with retinal lesion volume estimated by active contours. , 2004 .

[96]  Kannan,et al.  ON IMAGE SEGMENTATION TECHNIQUES , 2022 .

[97]  Gary L. Miller,et al.  Automatic Multiple Retinal Layer Segmentation in Spectral Domain OCT Scans via Spectral Rounding , 2008 .

[98]  Anthony J. Yezzi,et al.  A statistical approach to snakes for bimodal and trimodal imagery , 1999, Proceedings of the Seventh IEEE International Conference on Computer Vision.

[99]  Milan Sonka,et al.  Segmentation of the Surfaces of the Retinal Layer from OCT Images , 2006, MICCAI.

[100]  Timothy F. Cootes,et al.  Active Appearance Models , 1998, ECCV.

[101]  Gareth Funka-Lea,et al.  Graph Cuts and Efficient N-D Image Segmentation , 2006, International Journal of Computer Vision.

[102]  R. T. Smith,et al.  Automated detection of macular drusen using geometric background leveling and threshold selection. , 2005, Archives of ophthalmology.

[103]  T. Mitsui,et al.  Dynamic Range of Optical Reflectometry with Spectral Interferometry , 1999 .

[104]  Jagath C. Rajapakse,et al.  Statistical approach to segmentation of single-channel cerebral MR images , 1997, IEEE Transactions on Medical Imaging.

[105]  DeLiang Wang,et al.  Locally excitatory globally inhibitory oscillator networks , 1995, IEEE Transactions on Neural Networks.

[106]  James M. Rehg,et al.  Automated Macular Pathology Diagnosis in Retinal OCT Images Using Multi-Scale Spatial Pyramid with Local Binary Patterns , 2010, MICCAI.

[107]  J. Sethian,et al.  FRONTS PROPAGATING WITH CURVATURE DEPENDENT SPEED: ALGORITHMS BASED ON HAMILTON-JACOB1 FORMULATIONS , 2003 .

[108]  Angelika Unterhuber,et al.  Optophysiology of the Human RetinaWith Functional Ultrahigh Resolution Optical Coherence Tomography , 2006 .

[109]  Zhongping Chen,et al.  Phase-resolved optical coherence tomography and optical Doppler tomography for imaging blood flow in human skin with fast scanning speed and high velocity sensitivity. , 2000, Optics letters.