Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes
暂无分享,去创建一个
Ljiljana Paša-Tolić | Steven J. Hallam | S. Hallam | L. Paša-Tolić | A. Norbeck | H. Brewer | Alyse K. Hawley | Heather M. Brewer | Angela D. Norbeck
[1] Thomas Rattei,et al. The Genome of Nitrospina gracilis Illuminates the Metabolism and Evolution of the Major Marine Nitrite Oxidizer , 2012, Front. Microbio..
[2] M. Strous,et al. Evolution of an octahaem cytochrome c protein family that is key to aerobic and anaerobic ammonia oxidation by bacteria. , 2008, Environmental microbiology.
[3] S. Hallam,et al. Molecular tools for investigating microbial community structure and function in oxygen-deficient marine waters. , 2013, Methods in enzymology.
[4] Patricia P. Chan,et al. Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea , 2010, Proceedings of the National Academy of Sciences.
[5] Nicolas Gruber,et al. Ocean deoxygenation in a warming world. , 2010, Annual review of marine science.
[6] Jody J. Wright,et al. Diversity and population structure of Marine Group A bacteria in the Northeast subarctic Pacific Ocean , 2012, The ISME Journal.
[7] H. Hartnett,et al. Role of the oxygen‐deficient zone in transfer of organic carbon to the deep ocean , 2001 .
[8] M. Zubkov,et al. High abundance and dark CO2 fixation of chemolithoautotrophic prokaryotes in anoxic waters of the Baltic Sea , 2008 .
[9] S. Hallam,et al. Bacterial Community Structure and Dynamics in a Seasonally Anoxic Fjord: Saanich Inlet, British Columbia , 2011 .
[10] M. Kuypers,et al. Nitrite oxidation in the Namibian oxygen minimum zone , 2011, The ISME Journal.
[11] Camila Fernandez,et al. Nitrogen Fixation in Denitrified Marine Waters , 2011, PloS one.
[12] Nicolas Gruber,et al. Global patterns of marine nitrogen fixation and denitrification , 1997 .
[13] D. Canfield,et al. A Cryptic Sulfur Cycle in Oxygen-Minimum–Zone Waters off the Chilean Coast , 2010, Science.
[14] E. Delong,et al. Microbial metatranscriptomics in a permanent marine oxygen minimum zone. , 2012, Environmental microbiology.
[15] Hans W. Paerl,et al. The oceanic fixed nitrogen and nitrous oxide budgets: Moving targets as we enter the anthropocene?* , 2001 .
[16] H. Lester,et al. Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean , 2011 .
[17] M. Kuypers,et al. Microbial nitrogen cycling processes in oxygen minimum zones. , 2011, Annual review of marine science.
[18] Daniel Patrick Smith,et al. One Carbon Metabolism in SAR11 Pelagic Marine Bacteria , 2011, PloS one.
[19] A. Paulmier,et al. Oxygen minimum zones (OMZs) in the modern ocean , 2009 .
[20] T. Lueders,et al. 13C-isotope analyses reveal that chemolithoautotrophic Gamma- and Epsilonproteobacteria feed a microbial food web in a pelagic redoxcline of the central Baltic Sea. , 2009, Environmental microbiology.
[21] L. Farías,et al. Chemolithoautotrophic production mediating the cycling of the greenhouse gases N 2 O and CH 4 in an upwelling ecosystem , 2009 .
[22] R. Huey,et al. Ocean deoxygenation: Past, present, and future , 2011 .
[23] R. Amann,et al. Detoxification of sulphidic African shelf waters by blooming chemolithotrophs , 2009, Nature.
[24] Karthik Anantharaman,et al. Evidence for hydrogen oxidation and metabolic plasticity in widespread deep-sea sulfur-oxidizing bacteria , 2012, Proceedings of the National Academy of Sciences.
[25] B. Ward,et al. Denitrification as the dominant nitrogen loss process in the Arabian Sea , 2009, Nature.
[26] Howard J. Freeland,et al. Persistently declining oxygen levels in the interior waters of the eastern subarctic Pacific , 2007 .
[27] Thomas Rattei,et al. A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria , 2010, Proceedings of the National Academy of Sciences.
[28] R. Amann,et al. Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea , 2007, Proceedings of the National Academy of Sciences.
[29] R. Amann,et al. Revising the nitrogen cycle in the Peruvian oxygen minimum zone , 2009, Proceedings of the National Academy of Sciences.
[30] Susannah G. Tringe,et al. Metagenome of a Versatile Chemolithoautotroph from Expanding Oceanic Dead Zones , 2009, Science.
[31] Nicolas Gruber,et al. Spatial coupling of nitrogen inputs and losses in the ocean , 2007, Nature.
[32] F. Muller‐Karger,et al. Chemoautotrophy in the redox transition zone of the Cariaco Basin: A significant midwater source of organic carbon production , 2001 .
[33] Natalia N. Ivanova,et al. Insights into the phylogeny and coding potential of microbial dark matter , 2013, Nature.
[34] D. Y. Sorokin,et al. Biomass, production and activity of bacteria in the Black Sea, with special reference to chemosynthesis and the sulfur cycle , 1995, Hydrobiologia.
[35] J. Beman,et al. Nitrite oxidation in the upper water column and oxygen minimum zone of the eastern tropical North Pacific Ocean , 2013, The ISME Journal.
[36] Anders F. Andersson,et al. Active nitrogen-fixing heterotrophic bacteria at and below the chemocline of the central Baltic Sea , 2013, The ISME Journal.
[37] Dennis A. Hansell,et al. Sulfur oxidizers dominate carbon fixation at a biogeochemical hot spot in the dark ocean , 2013, The ISME Journal.
[38] D. Reed,et al. Gene-centric approach to integrating environmental genomics and biogeochemical models , 2014, Proceedings of the National Academy of Sciences.
[39] Kishori M. Konwar,et al. Microbial ecology of expanding oxygen minimum zones , 2012, Nature Reviews Microbiology.
[40] E. Delong,et al. Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone , 2013, The ISME Journal.
[41] E. Delong,et al. Pathways of Carbon Assimilation and Ammonia Oxidation Suggested by Environmental Genomic Analyses of Marine Crenarchaeota , 2006, PLoS biology.
[42] M. McIlvin,et al. Isotopic Signature of N2O Produced by Marine Ammonia-Oxidizing Archaea , 2011, Science.
[43] J. Randerson,et al. Primary production of the biosphere: integrating terrestrial and oceanic components , 1998, Science.
[44] B. Ward,et al. Chemoautotrophic activity and nitrification in the oxygen minimum zone off Peru , 1989 .
[45] Dhwani K. Desai,et al. Giant Hydrogen Sulfide Plume in the Oxygen Minimum Zone off Peru Supports Chemolithoautotrophy , 2013, PloS one.
[46] S. Hallam,et al. Microbial community structure across fluid gradients in the Juan de Fuca Ridge hydrothermal system. , 2013, FEMS microbiology ecology.
[47] Heidi J Sofia,et al. Phylogeny of the bacterial superfamily of Crp-Fnr transcription regulators: exploiting the metabolic spectrum by controlling alternative gene programs. , 2003, FEMS microbiology reviews.
[48] S. Hallam,et al. Microbial community dynamics in a seasonally anoxic fjord: Saanich Inlet, British Columbia. , 2010, Environmental microbiology.
[49] R. Schmitz,et al. Facets of diazotrophy in the oxygen minimum zone waters off Peru , 2014, The ISME Journal.
[50] Osvaldo Ulloa,et al. Microbial oceanography of anoxic oxygen minimum zones , 2012, Proceedings of the National Academy of Sciences.
[51] Dmitrij Frishman,et al. Deciphering the evolution and metabolism of an anammox bacterium from a community genome , 2006, Nature.
[52] M. Könneke,et al. Isolation of an autotrophic ammonia-oxidizing marine archaeon , 2005, Nature.
[53] S. Sievert,et al. Beyond the Calvin cycle: autotrophic carbon fixation in the ocean. , 2011, Annual review of marine science.