Estimation of flood-damaged cropland area using a convolutional neural network

Flood damage to croplands poses a significant threat to global food security. Effective disaster management to cope with future climate change, especially extreme precipitation, requires a robust framework to estimate such damage. For this study, we develop a model based on a convolutional neural network to estimate the area (in acres) of cropland damaged by flooding at the county level. Then we demonstrate the model’s performance for the period 2008–2019 over corn and soybean fields in the midwestern United States, which suffer frequent damage from recurrent flooding. We fed the network with remote sensing images and weather fields and divide the growing season into two windows, the early season (May–June) and the late season (July–November) for better performance. The results show mean relative error within ± 25% and relative root mean square error within 35%–75% in majority of the counties for most years. Finally, we show that the model forced with meteorological variables alone can provide acceptable accuracy, which indicates it can be applied to forecasting crop damage area in the upcoming season or the studying of future climate impact on crop productivity. In principle, the model can also be applied to food security assessment at the global scale using available records.

[1]  Pascale C. Dubois,et al.  Measuring soil moisture with imaging radars , 1995, IEEE Trans. Geosci. Remote. Sens..

[2]  Yang Hong,et al.  A global distributed basin morphometric dataset , 2017, Scientific Data.

[3]  Yong Liu,et al.  Remote-sensing disturbance detection index to identify spatio-temporal varying flood impact on crop production , 2019, Agricultural and Forest Meteorology.

[4]  Enrica Caporali,et al.  Floods and food security: A method to estimate the effect of inundation on crops availability , 2017 .

[5]  Saqib Mukhtar,et al.  Excessive Soil Water Effects at Various Stages of Development on the Growth and Yield of Corn , 1988 .

[6]  J. Ritchie,et al.  Maize shoot and root response to root zone saturation during vegetative growth , 1997 .

[7]  Wenling Shang,et al.  Convolutional Neural Networks for Crop Yield Prediction using Satellite Images , 2018 .

[8]  Xiaosen Wang,et al.  Effect of Waterlogging Duration at Different Growth Stages on the Growth, Yield and Quality of Cotton , 2017, PloS one.

[9]  Ehsan Eyshi Rezaei,et al.  Weather impacts on crop yields - searching for simple answers to a complex problem , 2017 .

[10]  Geoffrey E. Hinton,et al.  Deep Learning , 2015, Nature.

[11]  Albert J. Kettner,et al.  Near-real-time non-obstructed flood inundation mapping using synthetic aperture radar , 2019, Remote Sensing of Environment.

[12]  J. Bailly,et al.  Decadal monitoring of the Niger Inner Delta flood dynamics using MODIS optical data , 2015 .

[13]  P. C. Ram Maclean, J.L., Dawe, D.C., Hardy, B. and Hettel, G.P. (eds) Rice almanac. 3rd edn , 2003 .

[14]  Matthew B. Sullivan,et al.  Evaluating On‐Farm Flooding Impacts on Soybean , 2001 .

[15]  Xuebin Zhang,et al.  Human influence has intensified extreme precipitation in North America , 2020, Proceedings of the National Academy of Sciences.

[16]  Nari Kim,et al.  Machine Learning Approaches to Corn Yield Estimation Using Satellite Images and Climate Data :A Case of Iowa State , 2016 .

[17]  R. Grange,et al.  A review of the effects of atmospheric humidity on the growth of horticultural crops , 1987 .

[18]  M. Ek,et al.  Continental‐scale water and energy flux analysis and validation for North American Land Data Assimilation System project phase 2 (NLDAS‐2): 2. Validation of model‐simulated streamflow , 2012 .

[19]  Philip Marzahn,et al.  SAR-based detection of flooded vegetation – a review of characteristics and approaches , 2018 .

[20]  Zhengwei Yang,et al.  CropScape: A Web service based application for exploring and disseminating US conterminous geospatial cropland data products for decision support , 2012 .

[21]  Stefano Ermon,et al.  Deep Gaussian Process for Crop Yield Prediction Based on Remote Sensing Data , 2017, AAAI.

[22]  H. D. Scott,et al.  Flood duration effects on soybean growth and yield , 1989 .

[23]  Thomas J. Jackson,et al.  Soil moisture retrieval from AMSR-E , 2003, IEEE Trans. Geosci. Remote. Sens..

[24]  A. Mosier,et al.  Response of maize to three short-term periods of waterlogging at high and low nitrogen levels on undisturbed and repacked soil , 1987, Irrigation Science.

[25]  Marcos Rodrigo Momo,et al.  HAND contour: a new proxy predictor of inundation extent , 2016 .

[26]  J. Watts,et al.  A global satellite environmental data record derived from AMSR-E and AMSR2 microwave Earth observations , 2017 .

[27]  How does the drought of 2012 compare to earlier droughts in Kansas, USA? , 2013 .

[28]  Liu Zeng,et al.  The effect of waterlogging on yield and seed quality at the early flowering stage in Brassica napus L. , 2015 .

[29]  Yang Hong,et al.  A Semiphysical Microwave Surface Emission Model for Soil Moisture Retrieval , 2015, IEEE Transactions on Geoscience and Remote Sensing.

[30]  Andrej Ceglar,et al.  Land-surface initialisation improves seasonal climate prediction skill for maize yield forecast , 2018, Scientific Reports.

[31]  Qiuhua Liang,et al.  Integrated remote sensing imagery and two-dimensional hydraulic modeling approach for impact evaluation of flood on crop yields , 2017 .

[32]  C. Rosenzweig,et al.  Increased crop damage in the US from excess precipitation under climate change , 2002 .

[33]  M. Iredell,et al.  The NCEP Climate Forecast System Version 2 , 2014 .

[34]  N. Ramankutty,et al.  Influence of extreme weather disasters on global crop production , 2016, Nature.

[35]  J. Bailey-Serres,et al.  Waterproofing Crops: Effective Flooding Survival Strategies1 , 2012, Plant Physiology.

[36]  Wendy Kenyon,et al.  Scoping the role of agriculture in sustainable flood management , 2008 .

[37]  George P. Karatzas,et al.  An agricultural flash flood loss estimation methodology: the case study of the Koiliaris basin (Greece), February 2003 flood , 2015, Natural Hazards.

[38]  Bruno Merz,et al.  Floods and climate: emerging perspectives for flood risk assessment and management , 2014 .

[39]  Emmanouil N. Anagnostou,et al.  A Framework to Improve Hyper-resolution Hydrological Simulation in Snow-Affected Regions , 2017 .

[40]  E. Lin,et al.  Simulating the impact of flooding on wheat yield – Case study in East China , 2016 .

[41]  Yuqi Bai,et al.  Regression model to estimate flood impact on corn yield using MODIS NDVI and USDA cropland data layer , 2017 .

[42]  Yanjun Zhang,et al.  Growth, lint yield and changes in physiological attributes of cotton under temporal waterlogging , 2016 .

[43]  L. Voesenek,et al.  A stress recovery signaling network for enhanced flooding tolerance in Arabidopsis thaliana , 2018, Proceedings of the National Academy of Sciences.

[44]  Emmanouil N. Anagnostou,et al.  Inundation Extent Mapping by Synthetic Aperture Radar: A Review , 2019, Remote. Sens..

[45]  Andrew L. Maas Rectifier Nonlinearities Improve Neural Network Acoustic Models , 2013 .

[46]  Ryosuke Shibasaki,et al.  Estimating crop yields with deep learning and remotely sensed data , 2015, 2015 IEEE International Geoscience and Remote Sensing Symposium (IGARSS).

[47]  Dongryeol Ryu,et al.  Application of time series of remotely sensed normalized difference water, vegetation and moisture indices in characterizing flood dynamics of large-scale arid zone floodplains , 2017 .

[48]  Liping Di,et al.  RF-CLASS: A remote-sensing-based flood crop loss assessment cyber-service system for supporting crop statistics and insurance decision-making , 2017 .

[49]  Geoffrey E. Hinton,et al.  Rectified Linear Units Improve Restricted Boltzmann Machines , 2010, ICML.

[50]  S. Schladow,et al.  Lake surface water temperature [in “State of the Climate in 2019”] , 2020 .

[51]  John F. B. Mitchell,et al.  THE WCRP CMIP3 Multimodel Dataset: A New Era in Climate Change Research , 2007 .

[52]  Emmanouil N. Anagnostou,et al.  GDBC: A tool for generating global-scale distributed basin morphometry , 2016, Environ. Model. Softw..

[53]  N. Arora,et al.  Soybean Production Under Flooding Stress and Its Mitigation Using Plant Growth-Promoting Microbes , 2016 .

[54]  S. Brady,et al.  Evolutionary flexibility in flooding response circuitry in angiosperms , 2019, Science.

[55]  Chellammal Surianarayanan,et al.  AN APPROACH FOR PREDICTION OF CROP YIELD USING MACHINE LEARNING AND BIG DATA TECHNIQUES , 2019, INTERNATIONAL JOURNAL OF COMPUTER ENGINEERING AND TECHNOLOGY.

[56]  Ayalew Kassahun,et al.  Crop yield prediction using machine learning: A systematic literature review , 2020, Comput. Electron. Agric..

[57]  Zenghui Wang,et al.  Deep Convolutional Neural Networks for Image Classification: A Comprehensive Review , 2017, Neural Computation.

[58]  James M. Warner,et al.  Predicting high-magnitude, low-frequency crop losses using machine learning: an application to cereal crops in Ethiopia , 2018, Climatic Change.

[59]  E. Anagnostou,et al.  A High-Resolution Flood Inundation Archive (2016–the Present) from Sentinel-1 SAR Imagery over CONUS , 2021, Bulletin of the American Meteorological Society.

[60]  Marc Macias-Fauria,et al.  Sensitivity of global terrestrial ecosystems to climate variability , 2016, Nature.

[61]  Saqib Mukhtar,et al.  Corn growth as affected by excess soil water. , 1990 .

[62]  K. Mo,et al.  Continental-scale water and energy flux analysis and validation for the North American Land Data Assimilation System project phase 2 (NLDAS-2): 1. Intercomparison and application of model products , 2012 .

[63]  Yulia R. Gel,et al.  Deep Learning for Improved Agricultural Risk Management , 2019, HICSS.

[64]  Leo Breiman,et al.  Statistical Modeling: The Two Cultures (with comments and a rejoinder by the author) , 2001 .

[65]  Sergey Ioffe,et al.  Batch Normalization: Accelerating Deep Network Training by Reducing Internal Covariate Shift , 2015, ICML.

[66]  B. Combal,et al.  Time Series Analysis of Optical Remote Sensing Data for the Mapping of Temporary Surface Water Bodies in Sub-Saharan Western Africa , 2009 .

[67]  E. Anagnostou,et al.  Evaluation of the Hyper-Resolution Model-Derived Water Cycle Components Over the Upper Blue Nile Basin , 2020 .

[68]  H. Tabari Climate change impact on flood and extreme precipitation increases with water availability , 2020, Scientific Reports.

[69]  Jianying Yang,et al.  Indicator-based evaluation of spatiotemporal characteristics of rice flood in Southwest China , 2016 .

[70]  Michele Meroni,et al.  Estimating and understanding crop yields with explainable deep learning in the Indian Wheat Belt , 2020, Environmental Research Letters.

[71]  Jiaguo Qi,et al.  Monitoring Rice Agriculture across Myanmar Using Time Series Sentinel-1 Assisted by Landsat-8 and PALSAR-2 , 2017, Remote. Sens..

[72]  Shaohua Zhao,et al.  Orientation Angle Calibration for Bare Soil Moisture Estimation Using Fully Polarimetric SAR Data , 2011, IEEE Transactions on Geoscience and Remote Sensing.

[73]  Yoshua Bengio,et al.  Gradient-based learning applied to document recognition , 1998, Proc. IEEE.

[74]  K. Koehler,et al.  Flooding and Temperature Effects on Soybean Germination , 2001 .

[75]  M. Boori,et al.  A review of food security and flood risk dynamics in central dry zone area of Myanmar , 2017 .

[76]  E. Gbur,et al.  Performance of soft red winter wheat subjected to field soil waterlogging: Grain yield and yield components , 2016 .

[77]  Kamal Sarabandi,et al.  Semi-empirical model of the ensemble-averaged differential Mueller matrix for microwave backscattering from bare soil surfaces , 2002, IEEE Trans. Geosci. Remote. Sens..

[78]  Yang Hong,et al.  Bare Surface Soil Moisture Estimation Using Double-Angle and Dual-Polarization L-Band Radar Data , 2013, IEEE Transactions on Geoscience and Remote Sensing.