Laboratory cryo x-ray microscopy for 3D cell imaging

Water-window x-ray microscopy allows two- and three-dimensional (2D and 3D) imaging of intact unstained cells in their cryofixed near-native state with unique contrast and high resolution. Present operational biological water-window microscopes are based at synchrotron facilities, which limits their accessibility and integration with complementary methods. Laboratory-source microscopes have had difficulty addressing relevant biological tasks with proper resolution and contrast due to long exposure times and limited up-time. Here we report on laboratory cryo x-ray microscopy with the exposure time, contrast, and reliability to allow for routine high-spatial resolution 3D imaging of intact cells and cell-cell interactions. Stabilization of the laser-plasma source combined with new optics and sample preparation provide high-resolution cell imaging, both in 2D with ten-second exposures and in 3D with twenty-minute tomography. Examples include monitoring of the distribution of carbon-dense vesicles in starving HEK293T cells and imaging the interaction between natural killer cells and target cells.

[1]  L. Collinson,et al.  Imaging endosomes and autophagosomes in whole mammalian cells using correlative cryo-fluorescence and cryo-soft X-ray microscopy (cryo-CLXM)☆ , 2014, Ultramicroscopy.

[2]  H M Hertz,et al.  High average brightness water window source for short-exposure cryomicroscopy. , 2012, Optics letters.

[3]  B. Levine,et al.  Autosis and autophagic cell death: the dark side of autophagy , 2014, Cell Death and Differentiation.

[4]  A. Sorrentino,et al.  The Dual-axes for Soft X-Ray Cryo-tomography Reveals Ultrastructural Alterations of the Host Cell during Hepatitis C Infection by Increasing the Isotropic Axial Resolution , 2017, Microscopy and Microanalysis.

[5]  Björn Önfelt,et al.  Classification of human natural killer cells based on migration behavior and cytotoxic response. , 2013, Blood.

[6]  H M Hertz,et al.  Compact x-ray microscope for the water window based on a high brightness laser plasma source. , 2012, Optics express.

[7]  D. Vine,et al.  X-ray ptychographic and fluorescence microscopy of frozen-hydrated cells using continuous scanning , 2017, Scientific Reports.

[8]  José María Carazo,et al.  Marker-free image registration of electron tomography tilt-series , 2009, BMC Bioinformatics.

[9]  J. Dubochet,et al.  Cryo-electron microscopy of vitrified specimens , 1988, Quarterly Reviews of Biophysics.

[10]  T. Wilhein,et al.  Off-axis reflection zone plate for quantitative soft x-ray source characterization , 1997 .

[11]  Leann Tilley,et al.  Whole-cell phase contrast imaging at the nanoscale using Fresnel Coherent Diffractive Imaging Tomography , 2013, Scientific Reports.

[12]  Manolis Kellis,et al.  Soft X-Ray Tomography Reveals Gradual Chromatin Compaction and Reorganization during Neurogenesis In Vivo. , 2016, Cell reports.

[13]  Klaus Bergmann,et al.  Compact soft x-ray microscope using a gas-discharge light source. , 2008, Optics letters.

[14]  P. Guttmann,et al.  Oriented nucleation of hemozoin at the digestive vacuole membrane in Plasmodium falciparum , 2012, Proceedings of the National Academy of Sciences.

[15]  M. Smyth,et al.  NK cells and apoptosis , 1999, Immunology and cell biology.

[16]  J. Orange Formation and function of the lytic NK-cell immunological synapse , 2008, Nature Reviews Immunology.

[17]  Elizabeth A. Smith,et al.  Correlative cryogenic tomography of cells using light and soft x-rays. , 2014, Ultramicroscopy.

[18]  Gerd Schneider,et al.  Three-dimensional cellular ultrastructure resolved by X-ray microscopy , 2010, Nature Methods.

[19]  Carlos Oscar Sánchez Sorzano,et al.  TomoJ: tomography software for three-dimensional reconstruction in transmission electron microscopy , 2007, BMC Bioinformatics.

[20]  H. Hertz,et al.  Stability of liquid-nitrogen-jet laser-plasma targets , 2015 .

[21]  J. J. Conesa,et al.  Cryo-soft X-ray tomography as a quantitative three-dimensional tool to model nanoparticle:cell interaction , 2016, Journal of Nanobiotechnology.

[22]  S. Hell Microscopy and its focal switch , 2008, Nature Methods.

[23]  U. Vogt,et al.  Laboratory cryo soft X-ray microscopy. , 2012, Journal of structural biology.

[24]  A. Sakdinawat,et al.  Nanoscale X-ray imaging , 2009 .

[25]  Gerry McDermott,et al.  Soft X-ray tomography of phenotypic switching and the cellular response to antifungal peptoids in Candida albicans , 2009, Proceedings of the National Academy of Sciences.

[26]  J. Orange,et al.  New views of the human NK cell immunological synapse: recent advances enabled by super- and high-resolution imaging techniques , 2013, Front. Immun..

[27]  H. Hertz,et al.  Tomographic reconstruction in soft x-ray microscopy using focus-stack back-projection. , 2015, Optics letters.

[28]  Hans M. Hertz,et al.  Liquid-nitrogen-jet laser-plasma source for compact soft x-ray microscopy , 2005 .

[29]  T. Yoshimori,et al.  A current perspective of autophagosome biogenesis , 2013, Cell Research.

[30]  Keith A. Nugent,et al.  Coherent lensless X-ray imaging , 2010 .

[31]  J. Orange,et al.  Cell biological steps and checkpoints in accessing NK cell cytotoxicity , 2014, Immunology and cell biology.

[32]  J. Pawley,et al.  Handbook of Biological Confocal Microscopy , 1990, Springer US.

[33]  Björn Önfelt,et al.  Microchip-Based Single-Cell Imaging Reveals That CD56dimCD57−KIR−NKG2A+ NK Cells Have More Dynamic Migration Associated with Increased Target Cell Conjugation and Probability of Killing Compared to CD56dimCD57−KIR−NKG2A− NK Cells , 2015, The Journal of Immunology.

[34]  M. van Heel,et al.  Fourier shell correlation threshold criteria. , 2005, Journal of structural biology.

[35]  F. Sánchez‐Madrid,et al.  T cells kill bacteria captured by transinfection from dendritic cells and confer protection in mice. , 2014, Cell host & microbe.

[36]  O. Bunk,et al.  Ptychographic X-ray computed tomography at the nanoscale , 2010, Nature.

[37]  Wolfgang Baumeister,et al.  Electron tomography: towards visualizing the molecular organization of the cytoplasm. , 2002, Current opinion in structural biology.