Use of amino acid composition to predict epitope residues of individual antibodies.
暂无分享,去创建一个
Hiroki Shirai | Noriaki Hirayama | Shinji Soga | Masato Kobori | D. Kuroda | H. Shirai | Shinji Soga | M. Kobori | N. Hirayama | Daisuke Kuroda | Daisuke Kuroda
[1] Itay Mayrose,et al. Stepwise prediction of conformational discontinuous B‐cell epitopes using the Mapitope algorithm , 2007, Proteins.
[2] A. Lesk,et al. Conformations of immunoglobulin hypervariable regions , 1989, Nature.
[3] Jean-Luc Pellequer,et al. BEPITOPE: predicting the location of continuous epitopes and patterns in proteins , 2003, Journal of molecular recognition : JMR.
[4] Ying-hua Chen,et al. Fine-epitope mapping of an antibody that binds the ectodomain of influenza matrix protein 2. , 2008, FEMS immunology and medical microbiology.
[5] Haruki Nakamura,et al. Structural classification of CDR‐H3 revisited: A lesson in antibody modeling , 2008, Proteins.
[6] Timothy A. Springer,et al. Epitope Mapping of Antibodies to the C-Terminal Region of the Integrin β2 Subunit Reveals Regions that Become Exposed Upon Receptor Activation1 , 2001, The Journal of Immunology.
[7] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[8] K. R. Woods,et al. Prediction of protein antigenic determinants from amino acid sequences. , 1981, Proceedings of the National Academy of Sciences of the United States of America.
[9] Siyi Hu,et al. Epitope mapping and structural analysis of an anti‐ErbB2 antibody A21: Molecular basis for tumor inhibitory mechanism , 2008, Proteins.
[10] O. Lund,et al. Prediction of residues in discontinuous B‐cell epitopes using protein 3D structures , 2006, Protein science : a publication of the Protein Society.
[11] A. Alix,et al. Predictive estimation of protein linear epitopes by using the program PEOPLE. , 1999, Vaccine.
[12] E Westhof,et al. Predicting location of continuous epitopes in proteins from their primary structures. , 1991, Methods in enzymology.
[13] Hiroki Shirai,et al. Identification of the Druggable Concavity in Homology Models Using the PLB Index , 2007, J. Chem. Inf. Model..
[14] R. Frank. The SPOT-synthesis technique. Synthetic peptide arrays on membrane supports--principles and applications. , 2002, Journal of immunological methods.
[15] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[16] Bernd Mayer,et al. Machine learning approaches for prediction of linear B‐cell epitopes on proteins , 2006, Journal of molecular recognition : JMR.
[17] S. Jones,et al. Analysis of protein-protein interaction sites using surface patches. , 1997, Journal of molecular biology.
[18] Morten Nielsen,et al. Improved method for predicting linear B-cell epitopes , 2006, Immunome research.
[19] Yuxin Li,et al. Pep-3D-Search: a method for B-cell epitope prediction based on mimotope analysis , 2008, BMC Bioinformatics.
[20] Hiroki Shirai,et al. Chemocavity: Specific Concavity in Protein Reserved for the Binding of Biologically Functional Small Molecules , 2008, J. Chem. Inf. Model..
[21] Hiroki Shirai,et al. Use of Amino Acid Composition to Predict Ligand-Binding Sites , 2007, J. Chem. Inf. Model..
[22] A. Lesk,et al. Standard conformations for the canonical structures of immunoglobulins. , 1997, Journal of molecular biology.
[23] Haruki Nakamura,et al. Systematic classification of CDR‐L3 in antibodies: Implications of the light chain subtypes and the VL–VH interface , 2009, Proteins.