Systems analysis of RhoGEF and RhoGAP regulatory proteins reveals spatially organized RAC1 signalling from integrin adhesions
暂无分享,去创建一个
C. Bakal | Brett G Larsen | A. Gingras | T. Pawson | F. P. Roth | P. Mertins | K. Colwill | Vivian Nguyen | E. Petsalaki | O. Pertz | Robert-William Welke | O. Popp | Oliver Rocks | R. Bagshaw | G. Mbamalu | P. M. Müller | Juliane Rademacher | Celina Wortmann | Carolin Barth | J. van Unen | Keziban M. Alp | Girolamo Giudice | R. L. Eccles | Louise E. Heinrich | Patricia Pascual-Vargas | M. Sanchez‐Castro | Lennart Brandenburg | M. Tucholska | Lisa Spatt | Maciej T. Czajkowski | Sunqu Zhang | Trendelina Rrustemi | P. Trnka | Kiara Freitag | F. Roth | B. Larsen | K. M. Alp | Philipp Mertins
[1] P. Aspenström. Fast-cycling Rho GTPases , 2020, Small GTPases.
[2] A. Ridley,et al. Rho GTPase signaling complexes in cell migration and invasion , 2018, The Journal of cell biology.
[3] T. Mazel,et al. An excitable Rho GTPase signaling network generates dynamic subcellular contraction patterns , 2017, The Journal of cell biology.
[4] Devin K. Schweppe,et al. Architecture of the human interactome defines protein communities and disease networks , 2017, Nature.
[5] Chris Bakal,et al. RNAi screens for Rho GTPase regulators of cell shape and YAP/TAZ localisation in triple negative breast cancer , 2017, Scientific Data.
[6] Michal Ziv-Ukelson,et al. An Asymmetrically Balanced Organization of Kinases versus Phosphatases across Eukaryotes Determines Their Distinct Impacts , 2017, PLoS Comput. Biol..
[7] Amber L. Couzens,et al. Phenotypic and Interaction Profiling of the Human Phosphatases Identifies Diverse Mitotic Regulators. , 2016, Cell reports.
[8] M. Selbach,et al. Bimodal antagonism of PKA signalling by ARHGAP36 , 2016, Nature Communications.
[9] M. Ahmadian,et al. Deciphering the Molecular and Functional Basis of RHOGAP Family Proteins , 2016, The Journal of Biological Chemistry.
[10] A. Porter,et al. Deregulation of Rho GTPases in cancer , 2016, Small GTPases.
[11] O. Pertz,et al. Spatio-temporal co-ordination of RhoA, Rac1 and Cdc42 activation during prototypical edge protrusion and retraction dynamics , 2016, Scientific Reports.
[12] Guangchuang Yu,et al. ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization. , 2016, Molecular bioSystems.
[13] Robert D. Finn,et al. The Pfam protein families database: towards a more sustainable future , 2015, Nucleic Acids Res..
[14] Wen J. Li,et al. Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation , 2015, Nucleic Acids Res..
[15] José A. Dianes,et al. 2016 update of the PRIDE database and its related tools , 2015, Nucleic Acids Res..
[16] Alvis Brazma,et al. The BioStudies database , 2015, Molecular Systems Biology.
[17] O. Pertz,et al. SrGAP2-Dependent Integration of Membrane Geometry and Slit-Robo-Repulsive Cues Regulates Fibroblast Contact Inhibition of Locomotion. , 2015, Developmental cell.
[18] G. Ladds,et al. Ras activation revisited: role of GEF and GAP systems , 2015, Biological chemistry.
[19] Alan Rick Horwitz,et al. Signaling networks that regulate cell migration. , 2015, Cold Spring Harbor perspectives in biology.
[20] Kenneth M. Yamada,et al. An extracellular matrix-specific GEF-GAP interaction regulates Rho GTPase crosstalk for 3D collagen migration , 2014, Nature Cell Biology.
[21] Marco Y. Hein,et al. Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ * , 2014, Molecular & Cellular Proteomics.
[22] Malte Schmick,et al. KRas Localizes to the Plasma Membrane by Spatial Cycles of Solubilization, Trapping and Vesicular Transport , 2014, Cell.
[23] B. Geiger,et al. The integrin adhesome: from genes and proteins to human disease , 2014, Nature Reviews Molecular Cell Biology.
[24] K. Burridge,et al. The on-off relationship of Rho and Rac during integrin-mediated adhesion and cell migration , 2014, Small GTPases.
[25] Rafael C. Jimenez,et al. The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases , 2013, Nucleic Acids Res..
[26] L. Del Valle,et al. PDZ-RhoGEF is essential for CXCR4-driven breast tumor cell motility through spatial regulation of RhoA , 2013, Journal of Cell Science.
[27] Jacco van Rheenen,et al. A Versatile Toolkit to Produce Sensitive FRET Biosensors to Visualize Signaling in Time and Space , 2013, Science Signaling.
[28] Amber L. Couzens,et al. The CRAPome: a Contaminant Repository for Affinity Purification Mass Spectrometry Data , 2013, Nature Methods.
[29] M. Ahmadian,et al. New insight into the molecular switch mechanism of human Rho family proteins: shifting a paradigm , 2013, Biological chemistry.
[30] Jacqueline Cherfils,et al. Regulation of small GTPases by GEFs, GAPs, and GDIs. , 2013, Physiological reviews.
[31] M. Ahmadian,et al. Deciphering the Molecular and Functional Basis of Dbl Family Proteins , 2012, The Journal of Biological Chemistry.
[32] Kenneth M. Yamada,et al. New dimensions in cell migration , 2012, Nature Reviews Molecular Cell Biology.
[33] Martin H. Schaefer,et al. HIPPIE: Integrating Protein Interaction Networks with Experiment Based Quality Scores , 2012, PloS one.
[34] K. Burridge,et al. Rho protein crosstalk: another social network? , 2011, Trends in cell biology.
[35] P. Legendre,et al. Ward's Hierarchical Clustering Method: Clustering Criterion and Agglomerative Algorithm , 2011, ArXiv.
[36] Sean R. Eddy,et al. Accelerated Profile HMM Searches , 2011, PLoS Comput. Biol..
[37] Michel Bouvier,et al. A Synthetic Biology Approach Reveals a CXCR4-G13-Rho Signaling Axis Driving Transendothelial Migration of Metastatic Breast Cancer Cells , 2011, Science Signaling.
[38] Keith Burridge,et al. The 'invisible hand': regulation of RHO GTPases by RHOGDIs , 2011, Nature Reviews Molecular Cell Biology.
[39] J. Condeelis,et al. A Novel Spatiotemporal RhoC Activation Pathway Locally Regulates Cofilin Activity at Invadopodia , 2011, Current Biology.
[40] Richard Superfine,et al. The Rho GEFs LARG and GEF-H1 regulate the mechanical response to force on integrins , 2011, Nature Cell Biology.
[41] Derek J. Bailey,et al. COMPASS: A suite of pre‐ and post‐search proteomics software tools for OMSSA , 2011, Proteomics.
[42] Hyungwon Choi,et al. SAINT: Probabilistic Scoring of Affinity Purification - Mass Spectrometry Data , 2010, Nature Methods.
[43] Ali Kinkhabwala,et al. Regulation of Ras Localization by Acylation Enables a Mode of Intracellular Signal Propagation , 2010, Science Signaling.
[44] Martin A. Schwartz,et al. Cell adhesion: integrating cytoskeletal dynamics and cellular tension , 2010, Nature Reviews Molecular Cell Biology.
[45] Tony Pawson,et al. ProHits: an integrated software platform for mass spectrometry-based interaction proteomics , 2010, Nature Biotechnology.
[46] Helene Foussard,et al. LRCH Proteins: A Novel Family of Cytoskeletal Regulators , 2010, PloS one.
[47] Olivier Pertz,et al. Spatio-temporal Rho GTPase signaling – where are we now? , 2010, Journal of Cell Science.
[48] Zhaohui S. Qin,et al. A Global Protein Kinase and Phosphatase Interaction Network in Yeast , 2010, Science.
[49] A. Hyman,et al. Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions , 2010, The Journal of cell biology.
[50] P. Bastiaens,et al. The Palmitoylation Machinery Is a Spatially Organizing System for Peripheral Membrane Proteins , 2010, Cell.
[51] P. Wedegaertner,et al. The amino acid motif L/IIxxFE defines a novel actin-binding sequence in PDZ-RhoGEF. , 2009, Biochemistry.
[52] Gaudenz Danuser,et al. Coordination of Rho GTPase activities during cell protrusion , 2009, Nature.
[53] M. Mann,et al. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification , 2008, Nature Biotechnology.
[54] Anne J. Ridley,et al. Mammalian Rho GTPases: new insights into their functions from in vivo studies , 2008, Nature Reviews Molecular Cell Biology.
[55] J. Parsons,et al. FAK, PDZ-RhoGEF and ROCKII cooperate to regulate adhesion movement and trailing-edge retraction in fibroblasts , 2008, Journal of Cell Science.
[56] M. Gardel,et al. PyK2 and FAK connections to p190Rho guanine nucleotide exchange factor regulate RhoA activity, focal adhesion formation, and cell motility , 2008, The Journal of cell biology.
[57] K. Wennerberg,et al. A novel role for Lsc/p115 RhoGEF and LARG in regulating RhoA activity downstream of adhesion to fibronectin , 2007, Journal of Cell Science.
[58] J. Sondek,et al. Gαq Directly Activates p63RhoGEF and Trio via a Conserved Extension of the Dbl Homology-associated Pleckstrin Homology Domain* , 2007, Journal of Biological Chemistry.
[59] C. Der,et al. Release of autoinhibition of ASEF by APC leads to CDC42 activation and tumor suppression , 2007, Nature Structural &Molecular Biology.
[60] S. Itzkovitz,et al. Functional atlas of the integrin adhesome , 2007, Nature Cell Biology.
[61] Alfred Wittinghofer,et al. GEFs and GAPs: Critical Elements in the Control of Small G Proteins , 2007, Cell.
[62] J. Tcherkezian,et al. Current knowledge of the large RhoGAP family of proteins , 2007, Biology of the cell.
[63] Lewis H Romer,et al. FAK potentiates Rac1 activation and localization to matrix adhesion sites: a role for betaPIX. , 2006, Molecular biology of the cell.
[64] K. Burridge,et al. Catching a GEF by its tail. , 2007, Trends in cell biology.
[65] Shahab M. Danesh,et al. Regulation of Rho guanine nucleotide exchange factors by G proteins. , 2007, Advances in protein chemistry.
[66] D. Figeys,et al. The proteomic reactor: a microfluidic device for processing minute amounts of protein prior to mass spectrometry analysis. , 2006, Journal of proteome research.
[67] Tony Pawson,et al. Modification of the Creator recombination system for proteomics applications – improved expression by addition of splice sites , 2006, BMC biotechnology.
[68] P. Hordijk,et al. Jcb: Article Introduction , 2002 .
[69] Alan Hall,et al. Rho GTPases: biochemistry and biology. , 2005, Annual review of cell and developmental biology.
[70] C. Dermardirossian,et al. GDIs: central regulatory molecules in Rho GTPase activation. , 2005, Trends in cell biology.
[71] C. Der,et al. GEF means go: turning on RHO GTPases with guanine nucleotide-exchange factors , 2005, Nature Reviews Molecular Cell Biology.
[72] H. Benink,et al. Concentric zones of active RhoA and Cdc42 around single cell wounds , 2005, The Journal of cell biology.
[73] L. Saidi,et al. Structural Mechanism for Lipid Activation of the Rac-Specific GAP, β2-Chimaerin , 2004, Cell.
[74] K. Hahn,et al. Activation of Endogenous Cdc42 Visualized in Living Cells , 2004, Science.
[75] B. Dickson,et al. Vilse, a conserved Rac/Cdc42 GAP mediating Robo repulsion in tracheal cells and axons. , 2004, Genes & development.
[76] J. Gutkind,et al. Homo- and hetero-oligomerization of PDZ-RhoGEF, LARG and p115RhoGEF by their C-terminal region regulates their in vivo Rho GEF activity and transforming potential , 2004, Oncogene.
[77] Martin Vingron,et al. IntAct: an open source molecular interaction database , 2004, Nucleic Acids Res..
[78] Benjamin Geiger,et al. Live-cell monitoring of tyrosine phosphorylation in focal adhesions following microtubule disruption , 2003, Journal of Cell Science.
[79] M. Mann,et al. Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics. , 2003, Analytical chemistry.
[80] Y. Rao,et al. Signal Transduction in Neuronal Migration Roles of GTPase Activating Proteins and the Small GTPase Cdc42 in the Slit-Robo Pathway , 2001, Cell.
[81] J. Scott,et al. Akap-lbc Anchors Protein Kinase a and Nucleates G␣ 12 -selective Rho-mediated Stress Fiber Formation* , 2022 .
[82] C. Wells,et al. Identification of Potential Mechanisms for Regulation of p115 RhoGEF through Analysis of Endogenous and Mutant Forms of the Exchange Factor* , 2001, The Journal of Biological Chemistry.
[83] K. Hahn,et al. Localized Rac activation dynamics visualized in living cells. , 2000, Science.
[84] A. Poustka,et al. Systematic subcellular localization of novel proteins identified by large‐scale cDNA sequencing , 2000, EMBO reports.
[85] K. Rottner,et al. Interplay between Rac and Rho in the control of substrate contact dynamics , 1999, Current Biology.
[86] Takeshi Urano,et al. Activation of the Lbc Rho Exchange Factor Proto-Oncogene by Truncation of an Extended C Terminus That Regulates Transformation and Targeting , 1999, Molecular and Cellular Biology.
[87] A. Hall,et al. Rho GTPases and the actin cytoskeleton. , 1998, Science.
[88] M. Schliwa. Action of cytochalasin D on cytoskeletal networks , 1982, The Journal of cell biology.