1 Temporal signal and the phylodynamic threshold of SARS-CoV-2 2 3
暂无分享,去创建一个
A. Rambaut | G. Baele | S. Duchêne | L. Featherstone | Melina Haritopoulou-Sinanidou | Philippe | Lemey
[1] Nichollas E. Scott,et al. Direct RNA sequencing and early evolution of SARS-CoV-2 , 2020, bioRxiv.
[2] Tanja Stadler,et al. Improved multi-type birth-death phylodynamic inference in BEAST 2 , 2020, bioRxiv.
[3] Olga Chernomor,et al. IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era , 2019, bioRxiv.
[4] Sebastián Duchêne,et al. Bayesian Evaluation of Temporal Signal in Measurably Evolving Populations , 2019, bioRxiv.
[5] M. Suchard,et al. Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7 , 2018, Systematic biology.
[6] Daniel L. Ayres,et al. Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10 , 2018, Virus evolution.
[7] Veronika Boskova,et al. The influence of phylodynamic model specifications on parameter estimates of the Zika virus epidemic , 2018, Virus evolution.
[8] Trevor Bedford,et al. Nextstrain: real-time tracking of pathogen evolution , 2017, bioRxiv.
[9] Guy Baele,et al. Emerging Concepts of Data Integration in Pathogen Phylodynamics , 2016, Systematic biology.
[10] Meade Bernard,et al. Spartan HPC-Cloud Hybrid: Delivering Performance and Flexibility , 2017 .
[11] M. Suchard,et al. Genealogical Working Distributions for Bayesian Model Testing with Phylogenetic Uncertainty. , 2016, Systematic biology.
[12] Andrew Rambaut,et al. Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen) , 2016, Virus evolution.
[13] John J. Welch,et al. The effect of genetic structure on molecular dating and tests for temporal signal , 2015, Methods in ecology and evolution.
[14] L. du Plessis,et al. Getting to the root of epidemic spread with phylodynamic analysis of genomic data. , 2015, Trends in microbiology.
[15] O. Pybus,et al. Measurably evolving pathogens in the genomic era. , 2015, Trends in ecology & evolution.
[16] Sebastián Duchêne,et al. The Performance of the Date-Randomization Test in Phylogenetic Analyses of Time-Structured Virus Data. , 2015, Molecular biology and evolution.
[17] Veronika Boskova,et al. Inference of Epidemiological Dynamics Based on Simulated Phylogenies Using Birth-Death and Coalescent Models , 2014, PLoS Comput. Biol..
[18] Wai Lok Sibon Li,et al. Accurate model selection of relaxed molecular clocks in bayesian phylogenetics. , 2012, Molecular biology and evolution.
[19] Ziheng Yang,et al. Exploring uncertainty in the calibration of the molecular clock , 2012, Biology Letters.
[20] Ming-Hui Chen,et al. Choosing among Partition Models in Bayesian Phylogenetics , 2010, Molecular biology and evolution.
[21] M. Lipsitch,et al. How generation intervals shape the relationship between growth rates and reproductive numbers , 2007, Proceedings of the Royal Society B: Biological Sciences.
[22] A. Rodrigo,et al. Measurably evolving populations , 2003 .
[23] K. Katoh,et al. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. , 2002, Nucleic acids research.
[24] A. Lapedes,et al. Timing the ancestor of the HIV-1 pandemic strains. , 2000, Science.
[25] T Gojobori,et al. Molecular clock of viral evolution, and the neutral theory. , 1990, Proceedings of the National Academy of Sciences of the United States of America.